TCONS_00067571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067571
Unique NameTCONS_00067571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067571 ID=TCONS_00067571|Name=TCONS_00067571|organism=Clytia hemisphaerica|type=transcript|length=1940bp
CCCGATTCGGGAATATTTTCCCGAGAACGGAGTTACCGgtgcgaattttt
ttttcagaacaaaaacacaaaaacggTGACGAGGGGCAGATTTTACTGTT
TTCATCATCTTTTTGcaaactttgtttgattgtcaacTTTACTGTGTCAG
TAGTATCGGCTGTACTGAGTTACGAAAGAAGTCATTTCTCTAGCAAGATG
ACTATTTTACCCAAAAAGAAAGAATCCAGAAAAGGAGTAGAGGAACATGA
ATCTGAATCACGAAATCGAAACAGGAATAGAACTTCAAGAGATCCAAGGT
GCATCTCTGGTAGATCTAGCCACCAACAAGTTGAGAATTCAGAGAGCAGC
ACAAGCCACACACAGACTCAGCAGATATATAGTGGTATTCCTGTTTGTAT
GAACTCTGAAGATTCACCGAGCTTACCGTTAAAGAGACAAAGACATAATC
GAAAAAGTGTTTATGGCTGTCATCACAGTTCATCTGCCCCTTCATCTTCC
TCCACTTGCTGCAACAGAGACAGAACAGCTTCAGACCACCAAATACCACA
TTGTTCTAAAAGAAACACTGAAGAATTAGGAACAGAGGAAAAAACTGATG
GCTATAATAGCTCTGATGAATATGGTGAACCACCACCTCCCTGTGCCACA
GGCTGTGGTCAAAAGgattcATCTTCATTCGACATTGTTGAGATGGAGAA
GAATTTTGAGCATGATTTACGTGAGGAAAAAGGTTTTAATATAAAAGAGA
TGGCAACAGATGGAGCTTGCTTGTTCAGAGCTGTCGCGGACCAGATATAT
GGAGACCAAGAGATGCATGGTgttgtcagaagacattgcatggATTACAT
GgtgAAAAATCGGGATTTTTTTTCGCAATACGTGACAGAAGACTTCAACT
CTTACATTGGACGCAAAAGGAATGAACATAGTCATGGCAACCATATTGAA
ATGCAAGCCTTGAGTGAAATGTATAATCGACCTATCGAGGTCTATCAATA
TTCTACACAACCGATCAACACTTTCCATAGTCGAACATTATATAGCAGTA
ATGACGACACACCACCCATCCGATTATCCTACCATGGAAACGTTCATTAT
AATTCAATCATTGACCCTTACAACCCTACTGTTGGTGTTGGCCTTGGTTT
GGCTGGTTATAAACCTGGAACAGAAGAGGAGGAACTGATCAACAATTGTG
TAAAAGAATCAGAAACATCACAACTCGAACAgGCGATGTTAGAGGATAAG
TTGAAAGCAACGGACTGGGAGACTGCCGATGAGGACATTGCAGAAATGGT
GGCTAGAGAATCATATCTTCAGTGGCTCAAGGATAACCAAAAGTCCAAGA
ATGACACAAGCAGCTCAACAGCCAGCACTTCTGCCAAATCTCACTCACCA
CCAAAAGAACTCACCCAAAAGTCACCACCCCGAAAGTCACCCTCGCGAAA
GTCACCGTCCAGAAAATCTCCGCCTCGAACGACGGCGATAGAACACGTCA
CAACGACAACGTTGTCGAACCAACAAACTGCTTGTTGCTCAACAAACACT
TTACCCAACCCACAACCAGGATACACTGCTGACTGGCAATACtcagaATG
GGGCGATGACAGTTTGCTAGCAGCAGTATTGGCTCAATCACAACAAGATT
ACCTTCAAGAAATGGAACGACAAGCCCCTTCATCTTCTTCCAAGAAATGA
AtttcgtttgtttcttattcgATCTTCTTCATATTTGTATTATAAaacat
tatatattatattgtcTTGTGTCTAGTAAATAGATGTTCACTCTATATTA
CCTTAATTAACCTTTGTTGTTCCTAACCTAAACTGggatatatattttca
aacccGGGGTGGATGCTTGGGCAAAGAGGGGTACGGGGCTGTGTCGCTTG
TCAGAATACCTTTTTTCACTAACACAAGTCCCAGggtcac
Run BLAST on NCBI

protein sequence of TCONS_00067571-protein

>TCONS_00067571-protein ID=TCONS_00067571-protein|Name=TCONS_00067571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
RFGNIFPRTELPVRIFFSEQKHKNGDEGQILLFSSSFCKLCLIVNFTVSV
VSAVLSYERSHFSSKMTILPKKKESRKGVEEHESESRNRNRNRTSRDPRC
ISGRSSHQQVENSESSTSHTQTQQIYSGIPVCMNSEDSPSLPLKRQRHNR
KSVYGCHHSSSAPSSSSTCCNRDRTASDHQIPHCSKRNTEELGTEEKTDG
YNSSDEYGEPPPPCATGCGQKDSSSFDIVEMEKNFEHDLREEKGFNIKEM
ATDGACLFRAVADQIYGDQEMHGVVRRHCMDYMVKNRDFFSQYVTEDFNS
YIGRKRNEHSHGNHIEMQALSEMYNRPIEVYQYSTQPINTFHSRTLYSSN
DDTPPIRLSYHGNVHYNSIIDPYNPTVGVGLGLAGYKPGTEEEELINNCV
KESETSQLEQAMLEDKLKATDWETADEDIAEMVARESYLQWLKDNQKSKN
DTSSSTASTSAKSHSPPKELTQKSPPRKSPSRKSPSRKSPPRTTAIEHVT
TTTLSNQQTACCSTNTLPNPQPGYTADWQYSEWGDDSLLAAVLAQSQQDY
LQEMERQAPSSSSKK
Run BLAST on NCBI

transcript from alignment at scaffold_471:373249..383521+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067571 ID=TCONS_00067571|Name=TCONS_00067571|organism=Clytia hemisphaerica|type=transcript|length=10273bp|location=Sequence derived from alignment at scaffold_471:373249..383521+ (Clytia hemisphaerica)
CCCGATTCGGGAATATTTTCCCGAGAACGGAGTTACCGgtgcgaattttt
ttttcagaacaaaaacacaaaaacggTGACGAGGGGCAGATTTTACTGTT
TTCATCATCTTTTTGcaaactttgtttgattgtcaacTTTACTGTGTCAG
TAGTATCGGCTGTACTGAGTTACGAAAGAAGTCATTTCTCTAGCAAGATG
ACTATTTTACCCAAAAAGAAAGAATCCAGAAAAGGAGTAGAGGAACATGA
ATCTGAATCACGAAATCGAAACAGGAATAGAACTTCAAGAGATCCAAGGT
GCATCTCTGGTAGATCTAGCCACCAACAAGTTGAGAATTCAGAGAGCAGC
ACAAGCCACACACAGACTCAGCAGATATATAGTGGTATTCCTGTTTGTAT
GAACTCTGAAGATTCACCGAGCTTACCGTTAAAGAGACAAAGACATAATC
GAAAAAGTGTTTATGGCTGTCATCACAGTTCATCTGCCCCTTCATCTTCC
TCCACTTGCTGCAACAGAGACAGAACAGCTTCAGACCACCAAATACCACA
TTGTTCTAAAAGAAACACTGAAGAATTAGGAACAGAGGAAAAAACTGATG
GCTATAATAGCTCTGATGAATATGGTGAACCACCACCTCCCTGTGCCACA
GGCTGTGGTCAAAAGGTGGGTTGTGAACATattctgtttgataaaagttg
aatttgatcATGGGGTGTtaataccgtaacttggtctaatagaccttttt
tcaaagagaccACCCTgttctgttgaataattataatgtagtccagcaga
aaaacaatgatacacccatacataattattacaatatgcatgaaacagta
attatgcattgaTGTATCGTTGTTTGTAtgatggctggactacataatta
ttcaacagggttgcctctttgaaaaaaggtctatttcaacatccctcctc
taattctgacaccctttttatcagctgaaattgatagaaaggttgaaact
gtttttctttgctttagtggttcAGAGAGGAACAATCCTTTTCCAATCAG
TGATTTAAAGTTTCacattattcctgtctctaaagacagttagtcacact
aggaaatctagctttctgaaaaaacaatgtcagtcatctacaggatacat
ttcaacaacaaggatgagagttacctgaatcaagttcgcaagacaatatt
aattaaaacttgaaagttggaaacaaaataaaacNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcggtgcatttttttgcttgagagtcaagtaaacgatatagcgctttcg
cagcattaatctttgatacgcattttggcgggacgctagtgtggctaact
gaaagaagggtgtcagaattagacaaGTTCTTATCGAGGCTGGAAATGGT
GCACAATACGACAAATATATTCGGCATGAggtggcaatcacaaatatctt
cgtttcgcgtcgcccgaccgactctcgaaaatagagtagaattgagtcgg
taaatttgtcggactttttctgtcaatgagctttccttcgttcaaaaatt
ttattattgccgatttttttgcgagcgatttctagcgcattttgcgtaat
ttgcgatCCCTGTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAACCCTTACAGTCACAACCGATTCAACAACTGATGTTGATGTTG
TCGACATTGACCAGTCATCTGATTATAATTTCTCTGCTGGTAAACAAAGT
GAAGATgacgaaaaaaacaaaacaagaagaGGCGAAATCAAAGATAATGA
AAAGAAATCCCAAAtctgcaaattttacaaaattggaACATGCAAGCATG
GCCTAAAAGGAAAGGAATGCAACTACACTCACCCTAAAATGTGTCGCAAG
TTCACACAACATGGAACAAGGCAACCAAGAGGATGTAACCCTGGAACTAA
ATGCAAGGACTTTCATCCAAAAATGTGTTTAGATTCCCTTCAGAAAGGAG
AATGCTTTTCAGAATCCTGTTGTTTTGCTCATGTAAAAGGAACAAAAAGA
CAACCTCCAACTGTGAAAAGTAGTGTAGCGCACAAtaacaaacaatcaaa
caataacaaacaagaGCCTGGTCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTACAAATCCCCTTCAGGAGAAAATATCGAAAGGAAGA
AATTTGTGAAGGACCTGGGAGTACTAATGTCAGATGATGCTGTCTTTaca
catcaaataaattaaGTCATTGAGAAAGCAAAAAACTTGATTTCCTGGAT
TCTGCGGACTTTCTCTTCGCGTTTACCCTGGCAACTAATGATTACTCTTT
ACAAATCATTGGTTATTCCAGTCATTGAATATTGCTCAGTCCTATGGAGT
CCAAGTGCTGTCAGTTCTACCCAAAGATTAGAANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTATTCAGGTT
TGATGGATGCAGCATTGTGGTGTGAAGCAGAAAGTTTCTTGCCAGAGCAT
GAAGCTCGAAGACAACCAAAAGTAAccaaaagtaaaaagtaaccattcgc
agcattttgactttgacattacatgcgccattttgtggtcggaggtcaca
gtggctgcttttggctgctggctggctggcagttagcctagaaatctaag
ccaaAATGTGATATGAATTCTCAAAACAGTGTTTGATTTGTTATGTTAGG
CCTTGCTATAGTTCTTTACATTTTGAAGACATGCTAGAAGAAGGAGCCAT
ACTATACACTTGTTTAGAATTAGGTTACTATATTTGTCTTTATTTCCATA
GAGAATTTTTGTTGAACATATGTTATACATCATATTTGACACTCtggctt
gaaaaaatttcagaGGAAAACCTAATTGCCAGGCGGTTGGAAATATGCCT
TTCACCTGGATATTTATAATCATAATAACCACAACCAGGACGATACATTT
AGACAAAACTTAACATTTCTAAGATTATTTtcaacagaaagaaaaattcc
AATCACTATTCAGAGACTGTTTTGCATTAAGGCAAGAAATTTTTTcggaa
caaattttcgcggaatttaattttccaGTTTTTTCAACAAATCcgcaaaa
caaatttttcatgatttaaaaaatcacctatgaaattggtctttttaggg
caaaataggtcATATAACAAAAACTCCTCTCAACCACGCAACTAAATTCT
GCAAAACTTccaaattttgagctgtgaaccgtgaaattgaatttttctat
tAAGAAAGTTTCTGTCCTCAGAGTGACCTTTCTAGATAGGTATATCATGC
CACAGACACCAAATGTATTAGAACCCCCCCCCTGGACATCCTTATGAAGG
ATCTATTTTCAAGAAATGAAATGCATCGAATTGATTCTATTTTTCAACCA
TCATAGagagaaatatattttgattttgctcatctttttaacttttttta
cgCAAAATAGAAATTCTCCAAATTATATtgagttttgaaactcaatttaa
aataaagtatttttcccataaaattatataaaatgctattttgaatgata
aattctAAAGAGTGAATTAGAATTTCAATTTAGGCCTAAGTTTGACTCAC
TAAACTGTCAAAAGACTTTGGGTATACATCCAAACCCCttctgaagatat
tttcagtcaTATATAATTATAGcatttttacttgtttttattgtaaaagg
ACTGATAATAAACGAATTCAATGCCAAGATTATTTTTTATTCCCTGGAAA
TACTTTCAGATTCTTATCATTGCCAAAAGATTTTGGGTCCATATTTTAAT
AGAATTTATTCAACCATTTCTCtcattccttttttttttcaggattcATC
TTCATTCGACATTGTTGAGGTATGTAGGCAAGgagaaaataaagtttttg
caTATTACATCCTGTGTTTATTCAAACAATATGAGACAatcaattttact
tttaaatcaGTGTCTTTGTGGCTTCTTGTATCtggtaaatttgaaaattt
aataaaGGGTTCGCTGAGTTTGTCCAATATTTTTGCCACTTTGCATTTGA
ATATTGATTGATGTCAAGTTTTGTCACCACGACATTATTTACTTTGCTTT
CTTTGAAGATGGAGAAGAATTTTGAGCATGATTTACGTGAGGAAAAAGGT
TTTAATATAAAAGAGATGGCAACAGATGGAGCTTGCTTGTTCAGAGCTGT
CGGTAAGTGTCGCTCTATGGTTTATGATAACAAAAGAGAGATTCATTTTG
TTCAGTTGCGAAGAATGACAGCCAAAGATTAATTTATTTCCATGATTTTT
GACAAATATCTTGCTTCTTTCATTTTCAGCGGACCAGATATATGGAGACC
AAGAGATGCATGGTgttgtcagaagacattgcatggATTACATGGTTAGT
AACAGTAATATGAAATTTCTTTAACTTCAAATAATAATCCAGAATTCCTG
TACGATTTGCCGTATCAAAATTACAAttcttctcaatttttctttcaggt
gAAAAATCGGGATTTTTTTTCGCAATACGTGACAGAAGACTTCAACTCTT
ACATTGGACGCAAAAGGAATGAACATAGTCATGGCAACCATATTGAAATG
CAAGCCTTGAGTGAAATGTATAATCGACCTATCGAGGTCTATCAATATTC
TACACGTAAGTTGTTCCGTCTTTTCGTGTGTTAAACGCTGGCAAAAGTAG
GCTGGTACAAAGTTGAATCTTTATGATTTGGATTGCCAAATAGCAGTTAT
TTCGCCCTCAATTTGTATACTTGCCATAGTGTTAAGTATATCAAGAATGT
TAATTGTCCACCCACTGTAAATTCACACAAAAATATGGTGTTCATGTGAG
TGTGCTATCAGTTTGTTGTCACTACATGATGGCTCTTTCACGGGGTGGGG
GGGGGCTGCTACCCATTTTAGGGATAAATATTggaatttttgtttgtttt
tttacattTAGGGAGGATTGAAATTAGATAATatgatttttacgaccctt
tgagggactttgaAGGTCCAAACAGGTACCCTTAAAGGCGCCACATACCC
GTACCTTCCATTTGCCTAATTACTCCCTACCCCTTCTTTCCAAGCTTCCT
GgtctttttctcttttgtaGAACCGATCAACACTTTCCATAGTCGAACAT
TATATAGCAGTAATGACGACACACCACCCATCCGATTATCCTACCATGGA
AACGTTCATTATAATTCAATCATTGACCCTTACAACCCTACTGTTGGTGT
TGGCCTTGGTTTGGCTGGTTATAAACCTGGAGTGAGTTCATTACCATTGT
TCATTTTCGCTGTTTTCTGCTCATCTACATTTAAATACATTTAAATAGAT
ACTTTTAAAAAAGATGGACCAGTGATCAAGTTAAGCTTAAGATATTATCT
AGattagagtctacttttggctgaaattcgctttttcataatttttgatg
GCTACTCTCACAATCTTATACTTTAGAACTTTAGAGGGTAATGAAGACAA
GTGACGAAGTTGAACCGACGAAAATCTTACCAGGCGATAAATTTTGCCTG
TCTAGGTTCCGTTTAAGGCAGCTAAGTCATATTTTTGCGGTGggagaggc
ccccccagcggtttgcgtgatggcgtgattgggacttttttcttgcgtga
tggcgtgataagagattttttttggcgtgatggcgNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgcgtgatgaca
aattttagcgattttcgtgatgcgtgatggagaaaatttttttgcgtgat
ggcgtgattaggggtgccgctgggggggcctcgtGGGACgacttaacttt
cttttcatttattACAGACAGAAGAGGAGGAACTGATCAACAATTGTGTA
AAAGAATCAGAAACATCACAACTCGAACAggtttgtttgaaaattaaaat
cgtaGTCTGTGCTTTGCTTAGGCTGCACCCAtccctgaaatattttttgt
tctagTAAAACATACAAAGTGGACGTTGGGAGCTTATATTTTGCTATGTT
ATCATTGTCTTAGGGAGAAAACGTTTTCTCAAGATGATTGATAGATTACC
AATACGTTGTGTTTTAAATTTAATTCCCCCGCTCTTTTTACAGGCGATGT
TAGAGGATAAGTTGAAAGCAACGGACTGGGAGACTGCCGATGAGGACATT
GCAGAAATGGTGGCTAGAGAATCATATCTTCAGTGGCTCAAGGATAACCA
AAAGTCCAAGGTGCTTACACAACTATGCTTCCAATTACTTTACCCTTCcc
aacacccccttctcacagacccagtatgattttttcagtcagtggtagta
aaaataaactgaaatggtCCGAAACTctatggggattgatattcccatgt
ttttttatggctAGGGATTTAAATTCTATTGTTGGAAAATTCAATGAGGA
TAAAtggcacaatattttgcagtcaggatttgtttatttgattatctcCA
GTGGGGACGACAGCTGGAGTATAATTTTCtgctggggacgatattttggt
caaattctCCAGTGGGAAGGGCggtcccactgggtctgtgagaaggcgGT
GTCTCCCATAACTTACTTTTAAATCACTATAAATATAATGGAAGTTGTTG
CttgatagagacttcatttaATTAAGAAAAAAGATTACATGATAGAAGCG
ACTTTGCTTTCACTATAATTTTTTACAATATCTTTCTTACTAAACATTCA
TTATTTTTAGCATCAAAGCTCAAACATGGTTTATGTATGACCATATTCTG
ATACAAATTtctctctttctttttttgacaGAATGACACAAGCAGCTCAA
CAGCCAGCACTTCTGCCAAATCTCACTCACCACCAAAAGAACTCACCCAA
AAGTCACCACCCCGAAAGTCACCCTCGCGAAAGTCACCGTCCAGAAAATC
TCCGCCTCGAACGACGGCGATAGAACACGTCACAACGACAACGTTGTCGA
ACCAACAAACTGCTTGTTGCTCAACAAACACTTTACCCAACCCACAACCA
GGATACACTGCTGACTGGCAATACtcaggtacacgtttttttttattatg
taAAAGTTAATAAGGCTCGAACCCTGAAAATAGACAAATCTTTTTCACCA
TCTCGTATAGTAAAAGCTCTTTAGATAATCTAACTATGACAGACGATAGT
CCTTGGCCCAATAAGTATATGATATATTACCAGAcgtggtcaaagcaaat
ttttcagaaaatgagctagaatgctaagcaaccccagccTTGACACGAAA
ACTGGagctatttataaaaaaagttagtatttcATGATCCCATCTTTACA
GACATTAATGCTCTTTTTGACAACTATGTCGagtagattttttctttttc
ggtgTTGAACCTCCCATATTTCTGTCCTGTGTTTTCTTTATACTATAGCC
ATGTGATGAtttattttcgttattttcagaATGGGGCGATGACAGTTTGC
TAGCAGCAGTATTGGCTCAATCACAACAAGATTACCTTCAAGAAATGGAA
CGACAAGCCCCTTCATCTTCTTCCAAGAAATGAAtttcgtttgtttctta
ttcgATCTTCTTCATATTTGTATTATAAaacattatatattatattgtcT
TGTGTCTAGTAAATAGATGTTCACTCTATATTACCTTAATTAACCTTTGT
TGTTCCTAACCTAAACTGggatatatattttcaaacccGGGGTGGATGCT
TGGGCAAAGAGGGGTACGGGGCTGTGTCGCTTGTCAGAATACCTTTTTTC
ACTAACACAAGTCCCAGggtcac

Coding sequence (CDS) from alignment at scaffold_471:373249..383521+

>TCONS_00067571 ID=TCONS_00067571|Name=TCONS_00067571|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_471:373249..383521+ (Clytia hemisphaerica)
CGATTCGGGAATATTTTCCCGAGAACGGAGTTACCGgtgcgaattttttt
ttcagaacaaaaacacaaaaacggTGACGAGGGGCAGATTTTACTGTTTT
CATCATCTTTTTGcaaactttgtttgattgtcaacTTTACTGTGTCAGTA
GTATCGGCTGTACTGAGTTACGAAAGAAGTCATTTCTCTAGCAAGATGAC
TATTTTACCCAAAAAGAAAGAATCCAGAAAAGGAGTAGAGGAACATGAAT
CTGAATCACGAAATCGAAACAGGAATAGAACTTCAAGAGATCCAAGGTGC
ATCTCTGGTAGATCTAGCCACCAACAAGTTGAGAATTCAGAGAGCAGCAC
AAGCCACACACAGACTCAGCAGATATATAGTGGTATTCCTGTTTGTATGA
ACTCTGAAGATTCACCGAGCTTACCGTTAAAGAGACAAAGACATAATCGA
AAAAGTGTTTATGGCTGTCATCACAGTTCATCTGCCCCTTCATCTTCCTC
CACTTGCTGCAACAGAGACAGAACAGCTTCAGACCACCAAATACCACATT
GTTCTAAAAGAAACACTGAAGAATTAGGAACAGAGGAAAAAACTGATGGC
TATAATAGCTCTGATGAATATGGTGAACCACCACCTCCCTGTGCCACAGG
CTGTGGTCAAAAGgattcATCTTCATTCGACATTGTTGAGATGGAGAAGA
ATTTTGAGCATGATTTACGTGAGGAAAAAGGTTTTAATATAAAAGAGATG
GCAACAGATGGAGCTTGCTTGTTCAGAGCTGTCGCGGACCAGATATATGG
AGACCAAGAGATGCATGGTgttgtcagaagacattgcatggATTACATGg
tgAAAAATCGGGATTTTTTTTCGCAATACGTGACAGAAGACTTCAACTCT
TACATTGGACGCAAAAGGAATGAACATAGTCATGGCAACCATATTGAAAT
GCAAGCCTTGAGTGAAATGTATAATCGACCTATCGAGGTCTATCAATATT
CTACACAACCGATCAACACTTTCCATAGTCGAACATTATATAGCAGTAAT
GACGACACACCACCCATCCGATTATCCTACCATGGAAACGTTCATTATAA
TTCAATCATTGACCCTTACAACCCTACTGTTGGTGTTGGCCTTGGTTTGG
CTGGTTATAAACCTGGAACAGAAGAGGAGGAACTGATCAACAATTGTGTA
AAAGAATCAGAAACATCACAACTCGAACAgGCGATGTTAGAGGATAAGTT
GAAAGCAACGGACTGGGAGACTGCCGATGAGGACATTGCAGAAATGGTGG
CTAGAGAATCATATCTTCAGTGGCTCAAGGATAACCAAAAGTCCAAGAAT
GACACAAGCAGCTCAACAGCCAGCACTTCTGCCAAATCTCACTCACCACC
AAAAGAACTCACCCAAAAGTCACCACCCCGAAAGTCACCCTCGCGAAAGT
CACCGTCCAGAAAATCTCCGCCTCGAACGACGGCGATAGAACACGTCACA
ACGACAACGTTGTCGAACCAACAAACTGCTTGTTGCTCAACAAACACTTT
ACCCAACCCACAACCAGGATACACTGCTGACTGGCAATACtcagaATGGG
GCGATGACAGTTTGCTAGCAGCAGTATTGGCTCAATCACAACAAGATTAC
CTTCAAGAAATGGAACGACAAGCCCCTTCATCTTCTTCCAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042198XLOC_042198Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067571-proteinTCONS_00067571-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067571-exon-scaffold_471-1491911889:373249..373913TCONS_00067571-exon-scaffold_471-1491911889:373249..373913Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:373249..373913TCONS_00067571-exon-scaffold_471-1510915933:373249..373913Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:373249..373913TCONS_00067571-exon-scaffold_471-1575043694:373249..373913Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:379191..379217TCONS_00067571-exon-scaffold_471-1491911889:379191..379217Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:379191..379217TCONS_00067571-exon-scaffold_471-1510915933:379191..379217Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:379191..379217TCONS_00067571-exon-scaffold_471-1575043694:379191..379217Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:379457..379550TCONS_00067571-exon-scaffold_471-1491911889:379457..379550Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:379457..379550TCONS_00067571-exon-scaffold_471-1510915933:379457..379550Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:379457..379550TCONS_00067571-exon-scaffold_471-1575043694:379457..379550Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:379678..379742TCONS_00067571-exon-scaffold_471-1491911889:379678..379742Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:379678..379742TCONS_00067571-exon-scaffold_471-1510915933:379678..379742Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:379678..379742TCONS_00067571-exon-scaffold_471-1575043694:379678..379742Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:379847..380003TCONS_00067571-exon-scaffold_471-1491911889:379847..380003Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:379847..380003TCONS_00067571-exon-scaffold_471-1510915933:379847..380003Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:379847..380003TCONS_00067571-exon-scaffold_471-1575043694:379847..380003Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:380469..380629TCONS_00067571-exon-scaffold_471-1491911889:380469..380629Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:380469..380629TCONS_00067571-exon-scaffold_471-1510915933:380469..380629Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:380469..380629TCONS_00067571-exon-scaffold_471-1575043694:380469..380629Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:381566..381628TCONS_00067571-exon-scaffold_471-1491911889:381566..381628Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:381566..381628TCONS_00067571-exon-scaffold_471-1510915933:381566..381628Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:381566..381628TCONS_00067571-exon-scaffold_471-1575043694:381566..381628Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:381842..381958TCONS_00067571-exon-scaffold_471-1491911889:381842..381958Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:381842..381958TCONS_00067571-exon-scaffold_471-1510915933:381842..381958Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:381842..381958TCONS_00067571-exon-scaffold_471-1575043694:381842..381958Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:382530..382776TCONS_00067571-exon-scaffold_471-1491911889:382530..382776Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:382530..382776TCONS_00067571-exon-scaffold_471-1510915933:382530..382776Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:382530..382776TCONS_00067571-exon-scaffold_471-1575043694:382530..382776Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1491911889:383178..383521TCONS_00067571-exon-scaffold_471-1491911889:383178..383521Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1510915933:383178..383521TCONS_00067571-exon-scaffold_471-1510915933:383178..383521Clytia hemisphaericaexon
TCONS_00067571-exon-scaffold_471-1575043694:383178..383521TCONS_00067571-exon-scaffold_471-1575043694:383178..383521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:373249..383521 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.0764	38.5137	14.3414	11.5561	25.0413	21.5571	27.2461	29.4792	25.3195	23.5966	43.8758	37.6055	49.821	66.0937	36.9391	41.165	27.3254	33.8425	63.684	49.268	40.009	38.305	39.5031	43.3917	87.7345	88.9256	19.8972	24.1741	24.8413	28.2992
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
[Close]
BLAST of TCONS_00067571 vs. Swiss-Prot (Human)
Match: OTUD5 (OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 1.146e-93
Identity = 148/257 (57.59%), Postives = 186/257 (72.37%), Query Frame = 3 
Query:  585 EEKTDGYNSSDEYGEPPPPCATGCGQKDSSSFDIVEMEKNFEHDLREEKGFNIKEMATDGACLFRAVADQIYGDQEMHGVVRRHCMDYMVKNRDFFSQYVTEDFNSYIGRKRNEHSHGNHIEMQALSEMYNRPIEVYQYST-----QPINTFHSRTLYSSNDDTPPIRLSYHGNVHYNSIIDPYNPTVGVGLGLAGYKPGTEEEELINNCVKESETSQLEQAMLEDKLKATDWETADEDIAEMVARESYLQWLKDNQ 1340
            EE   GYNS DEY       A      D ++ +  + E  FE  LR++KGF IK+M  DGACLFRAVADQ+YGDQ+MH VVR+HCMDY++KN D+FS YVTEDF +YI RKR  + HGNHIEMQA++EMYNRP+EVYQYST     +PINTFH   ++ + D+  PIR+SYH N+HYNS+++P   T+GVGLGL  +KPG  E+ L+ N +K SE S +EQ MLEDK +ATDWE  +E I E VARESYLQWL+D +
Sbjct:  169 EEVGAGYNSEDEYEA----AAARIEAMDPATVE--QQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHG--IHQNEDE--PIRVSYHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVARESYLQWLRDQE 415
The following BLAST results are available for this feature:
BLAST of TCONS_00067571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTUD51.146e-9357.59OTU domain-containing protein 5 OS=Homo sapiens GN... [more]
back to top