|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067635 ID=TCONS_00067635|Name=TCONS_00067635|organism=Clytia hemisphaerica|type=transcript|length=1678bp
TatataaatgataaaaataaaatgagctTAATAAATACTGACaacaagat
tagaaaaaatgagaaagatTCAACACGAGTAGATAACAGAATCATGGATG
GTGAAAAGTATTTATTGAAGTATGACATCCATTTCTACTTAGGGGATGCA
GTCAAACAAATGTTGCGCTGTAAAACATCCAACATTAAAATCACATCTAC
TAATGTTTTACATGAGTATTttgttaatgtcaaaaaaggAAATCATGTAT
TGTTGCGTGAATATGATTACATCCAAGCAACCAATTGGAATCGTTTATCA
TttattagaaaattttggaaatcttttgaACATCTTTCATCAAATGGTGG
ATTGTATTCTGGCAATGATTTTCAATCATTTCTATGTTTATTATGTCCAG
ATTTTTCAGAGGATATTGTACAAAAGGCAATGGAAATTGCTTCTCAGAAT
GAAAATTGTCTAGAAACCAATTTAGTCATTTCTTTTTCAGACTTTACATA
CAACATGCAGTTCATATTTTACTATATGGAATTCTCAAAACATTGTGAag
atatttttaagaatttgatACACCATGAATCATCTCTGGATCCAAATTCA
CCAAGAAGCAACATACCAtccaaatcatttttaagacaTGTTAgagaaca
gatattttacaagAATGAGATTTTAACACCACCTGCAGACATTGTTGAAG
ATTTACTTAGAAGTTCTTCACACATTGATTATTATCAATTTATAACTATG
CTGAGCCAAAACACAAGGATCGTTTTGTTGTACAATCAATGATTTTTGTC
GAGTCAGCatattttacaatattttgGCTGAGTTATCAAAACTATCTTGT
GACTTAGCTAATCGAAACTATTTTCAACTAGTTTCTTCCCGTCGGGGGAG
GGTACTTAGGCTAGTGAAGGTACAGGTATGTCCGACCCTTTTTTGGAACC
TGGCAGTCCCTGTTGGGAAAGTTAGAAAATTCAACCTCTGTCCCACTTTT
Gcactaagggtcagaaaaataggaaaatttcaattatttgaccccaaaat
catcaaaatttggtcaaattagtccctaTAAAGGTCGTAAAAATTCACAC
ACTGGTACCCCTATCATTCTGTAAACCCAGTATCCCCTACTGGGAGTACG
TTTCAAGGcccattttttgaaatgttgGTTTGAAAGTGTAAACGTTACTG
TGCGTAATGACATCACCAAGGAATGTGACAGATTTTGTGTCATTCTGGAC
CATTTTAGGGGTCTAGgtaattgaccaaatttcataaaagacCCAATTTT
TGCCATGTGCTTTTCATGATCTTTTAGATATTCTgttatttattttcgaa
aactttttaaaaaaatcttattttcaggtatttttACTGAAAATCGACAA
AATAAAATCCCCTAAAAAGGATCCAAAACTCTTCCATTCGATTGCAGTTT
TTCTTGGCGGTTCTAGGACCCATTACGAGCCTCTCTGCCAAATTTTAGCC
AAGTATTTATATTGAGTTCTGGTATTATTTTTTCCAAGGTAAAAGGCGTA
ATTCTAGTGGACTCTattggatttgtttatttgcttTAAAGACACTGTAT
ACTATTTCtgtaaatatttattgtaaaaAATAGCTCAGACATTTAAATAT
TGCAATATATACATTGAGTAGTTTATTT Run BLAST on NCBI transcript from alignment at scaffold_472:91670..93401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067635 ID=TCONS_00067635|Name=TCONS_00067635|organism=Clytia hemisphaerica|type=transcript|length=1732bp|location=Sequence derived from alignment at scaffold_472:91670..93401+ (Clytia hemisphaerica)
TatataaatgataaaaataaaatgagctTAATAAATACTGACaacaagat
tagaaaaaatgagaaagatTCAACACGAGTAGATAACAGAATCATGGATG
GTGAAAAGTATTTATTGAAGTATGACATCCATTTCTACTTAGGGGATGCA
GTCAAACAAATGTTGCGCTGTAAAACATCCAACATTAAAATCACATCTAC
TAATGTTTTACATGAGTATTttgttaatgtcaaaaaaggAAATCATGTAT
TGTTGCGTGAATATGATTACATCCAAGCAACCAATTGGAATCGTTTATCA
TttattagaaaattttggaaatcttttgaACATCTTTCATCAAATGGTGG
ATTGTATTCTGGCAATGATTTTCAATCATTTCTATGTTTATTATGTCCAG
ATTTTTCAGAGGATATTGTACAAAAGGCAATGGAAATTGCTTCTCAGAAT
GAAAATTGTCTAGAAACCAATTTAGTCATTTCTTTTTCAGACTTTACATA
CAACATGCAGTTCATATTTTACTATATGGAATTCTCAAAACATTGTGAag
atatttttaagaatttgatACACCATGAATCATCTCTGGATCCAAATTCA
CCAAGAAGCAACATACCAtccaaatcatttttaagacaTGTTAgagaaca
gatattttacaagAATGAGATTTTAACACCACCTGCAGACATTGTTGAAG
ATTTACTTAGAAGTTCTTCACACATTGATTATTATCAATTTATAACTATG
CTGAGCCAAAACACAAGGATCGTTTTGTTGTACAATCAATGATTTTTGTC
GAGTCAGCatattttacaatattttgGCTGAGTTATCAAAACTATCTTGT
GACTTAGCTAATCGAAACTATTTTCAACTAGTTTCTTCCCGTCGGGGGAG
GGTACTTAGGCTAGTGAAGGTACAGGTATGTCCGACCCTTTTTTGGAACC
TGGCAGTCCCTGTTGGGAAAGTTAGAAAATTCAACCTCTGTCCCACTTTT
Gcactaagggtcagaaaaataggaaaatttcaattatttgaccccaaaat
catcaaaatttggtcaaattagtccctaTAAAGGTCGTAAAAATTCACAC
ACTGGTACCCCTATCATTCTGTAAACCCAGTATCCCCTACTGGGAGTACG
TTTCAAGGcccattttttgaaatgttgGTTTGAAAGTGTAAACGTTACTG
TGCGTAATGACATCACCAAGGAATGTGACAGATTTTGTGTCATTCTGGAC
CATTTTAGGGGTCTAGgtaattgaccaaatttcataaaagacCCAATTTT
TGCCATGTGCTTTTCATGATCTTTTAGATATTCTgttatttattttcgaa
aactttttaaaaaaatcttattttcaggtatttttACTGAAAATCGACAA
AATAAAATCCCCTAAAAAGGATCCAAAACTCTTCCATTCGATTGCAGTTT
TTCTTGGCGGTTCTAGGACCCATTACGAGCCTCTCTGCCAAATTTTAGCC
AAGTATTTATATTGAGTTCTGGTATTATTTTTTCCAAGGTAAAAGGCNtg
ccaaatttcagccaagtATTTATATTGAGTTCTGGTATTATTTTTTCCAA
GGTAATTCTAGTGGACTCTattggatttgtttatttgcttTAAAGACACT
GTATACTATTTCtgtaaatatttattgtaaaaAATAGCTCAGACATTTAA
ATATTGCAATATATACATTGAGTAGTTTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067635-exon-scaffold_472-1491911889:91670..93216 | TCONS_00067635-exon-scaffold_472-1491911889:91670..93216 | Clytia hemisphaerica | exon |
| TCONS_00067635-exon-scaffold_472-1510915933:91670..93216 | TCONS_00067635-exon-scaffold_472-1510915933:91670..93216 | Clytia hemisphaerica | exon |
| TCONS_00067635-exon-scaffold_472-1575043694:91670..93216 | TCONS_00067635-exon-scaffold_472-1575043694:91670..93216 | Clytia hemisphaerica | exon |
| TCONS_00067635-exon-scaffold_472-1491911889:93271..93401 | TCONS_00067635-exon-scaffold_472-1491911889:93271..93401 | Clytia hemisphaerica | exon |
| TCONS_00067635-exon-scaffold_472-1510915933:93271..93401 | TCONS_00067635-exon-scaffold_472-1510915933:93271..93401 | Clytia hemisphaerica | exon |
| TCONS_00067635-exon-scaffold_472-1575043694:93271..93401 | TCONS_00067635-exon-scaffold_472-1575043694:93271..93401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:91670..93401 + |
Blast
BLAST of TCONS_00067635 vs. Swiss-Prot (Human)
Match: CK049 (UPF0705 protein C11orf49 OS=Homo sapiens GN=C11orf49 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 7.942e-30 Identity = 72/242 (29.75%), Postives = 120/242 (49.59%), Query Frame = 1
Query: 106 KYLLKYDIHFYLGDAVKQMLRCKTSNIKITSTNVLHEYFVNVKKGNHVLLREYDYIQATNWNRLSFIRKFWKSFEHLSSNGGLYSGNDFQSFLCLLCPDFSEDIVQKAMEIASQNENCLETNLVISFSDFTYNMQFIFYYMEFSKHCEDIFKNLIHHESSLDPNS------------PRSNIPSKSFLRHVREQIFY--------KNEILTPPADIVEDLLRSSSHIDYYQFITMLSQNTRI 771
+YL + + Y+ DAV Q+L + + EYF +V +G H+L RE+ ++QAT NR+SF+R FW+ F + NG L + ++ L LLCPDF ++ QKA I ++ + ++SFSDF + Q FYY EF I+++L+ S +PN+ R + L V +FY +++ PP +V++ L + + +Y F+ LS++ I
Sbjct: 13 EYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHILFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKAARIVLMDD---AMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLL---SGKNPNTVIVPTSSSGQHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLMALSKHRGI 248
The following BLAST results are available for this feature:
|
