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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067657 ID=TCONS_00067657|Name=TCONS_00067657|organism=Clytia hemisphaerica|type=transcript|length=1140bp
tgaaaatggccaaaaaattaagaatatggtaagaatatcaccatcatgga
atgaTGATTTAACCTGTAGATTGCCAATTTCGATCTTAACCtaagaatac
cgtaagaatatttttggatgattttcgccaaaaagttaagaatatccatg
atgaaatgaaaaaacaccattcttataaaaaaaagcgtgtatactgAGAA
ATTTTCTGGTTGTATCATATTAGAATTTAATCAGTGAAATAAAGTCCACT
TTTATTGCTTTTTAAGCTATATTGGAATCAATGCTTTCACCAAGTAAAGA
TGTGAAAAACGTAATATGTGAAGATTGTTTGCAGATTGCAGTACAGTTGA
ATAAGATTGAGATAGTAAATCTGGTTTGCCGAGAAGCACCGAATAACATG
ATGCACTGTGCTTCAAAGGCTTTGGATTATGGTCATCATGAAATTGCTTT
ACTACTTTTGTCTTACACGGCTACCATCCACAACAATCATGAATTTTTAG
AATTGTTATTCGGAAGAGAACCAGCAGTAGAAGAGAGTGATTGTTTTCAT
CAATATTACTCGTTGACATTAACATGGAGTGACATTGAAAAACTTAGGTG
TTACACGAAGAATGATAGTGTCAGCGGTATGGTCAAGAATTTGATGTTCA
AATGCTCAGGCGTTAAGACAAAACTTGgtcaaaaatgtttgaaagtGATA
CTGTTaagtaaaaaatattgctgcGATTCCAGAAATAAAGTGAATTGGGA
ACAATTGGGTCTGACACATCTAGAGGAATCTTATATCAATGACATTGCAA
ATTATCATAAACTCTCTTTAGTTGATAATCTAATTTCACATTTGCCATGG
AATTTGGAAGTTTTAGTTAACCTGACACATTTGGATCTTAGTCAAAATAA
AGTCCAAGAAATCCCTGTCACGTTGCTTCAATTACCATGTTTGAGAAGAT
TAAATCTCTCTTGTAATCTGATCGAGAGTTTGCCTCAAACAAACAAATGG
TCACCGTTGCTTAGAGCGTTATCTCTTTCTGGAAACTTATTAACATCTTT
GCCGAGCAAAATCGATTCAAAGATCACATACTTAAGTATTGCAAACAACA
AATTCAAAGAGTTCCCGATGGTGATATGTAATATGAAAAC Run BLAST on NCBI transcript from alignment at scaffold_472:239685..241663+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067657 ID=TCONS_00067657|Name=TCONS_00067657|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at scaffold_472:239685..241663+ (Clytia hemisphaerica)
tgaaaatggccaaaaaattaagaatatggtaagaatatcaccatcatgga
atgaTGATTTAACCTGTAGATTGCCAATTTCGATCTTAACCtaagaatac
cgtaagaatatttttggatgattttcgccaaaaagttaagaatatccatg
atgaaatgaaaaaacaccattcttataaaaaaaagcgtgtatactgAGAA
ATTTTCTGGTTGTATCATATTAGAATTTAATCAGTGAAATAAAGTCCACT
TTTATTGCTTTTTAAGCTATATTGGAATCAATGCTTTCACCAAGTAAAGA
TGTGAAAAACGTAATATGTGAAGATTGTTTGCAGATTGCAGTACAGTTGA
ATAAGATTGAGATAGTAAATCTGGTTTGCCGAGAAGCACCGAATAACATG
ATGCACTGTGCTTCAAAGGCTTTGGATTATGGTCATCATGAAATTGCTTT
ACTACTTTTGTCTTACACGGCTACCATCCACAACAATCATGAATTTTTAG
AATTGTTATTCGGAAGAGAACCAGCAGTAGAAGAGAGTGATTGTTTTCAT
CAATATTACTCGTTGACATTAACATGGAGTGACATTGAAAAACTTAGGTA
AGGGTTCCTATACCCCATTAATAACTCCATTATCTACGGTTCGTAATAAT
TATCATTATCTGTAGGCAAAAGCAGCCAtcgaataattcctgatatacta
CGGCTATTTTACCAAGGTAGATGGCcaaatcaaaatctttcaaattatcT
CGAATTAGGTAATGATAATGATCGAAGAGTAAACATTTTTGCATCTTTGC
GTGCCATTATTGTATTcgattgtttattttgattgatAGAGCCCACATAT
ATAAAACTAGGAACTAGTTTTTTCTGTTCAATTTTGTAAAACACTGTCTT
TCCCAAACCACGGGAGTTGaacaaaaacaatgataaaaaaaagtagaCCA
CAGTAAAAACCACAGTTCGGTGCTGACAATTTTGTCAATCAAACCAAAca
atagtctgaatcgcagaccgtTATAGATATACGTACTTCgtatattgggc
tcttccagaaaatgttcgtacacccCAGATGGAGGATATATTTTCCGGGG
GTagcgaaaattatcaaaatttgctttgtccgggggggggggtaaatttg
ctctgtccaaGTTGGGTTTTCTTCGTTTGTAACATAAAACAACAATGTTT
AAACAATATGTCGTGTAATTAAGTGATAGAAGATAAGTTTAAAATGATGT
CAGTTCACGAAATCAcgcaatttcttttttgtttctcacgaaatttctgt
tcacgcaaagttttccaattcacgcattcacgcagatttttaaaaatctt
cacgCATTTACGCAAGTAACTGGGGGCCCCTTTAAAGTGGCTCTGATAGT
AATAATTAAaatccttttcttcttttccttacGTAGGTGTTACACGAAGA
ATGATAGTGTCAGCGGTATGGTCAAGAATTTGATGTTCAAATGCTCAGGC
GTTAAGACAAAACTTGgtcaaaaatgtttgaaagtGATACTGTTaagtaa
aaaatattgctgcGATTCCAGAAATAAAGTGAATTGGGAACAATTGGGTC
TGACACATCTAGAGGAATCTTATATCAATGACATTGCAAATTATCATAAA
CTCTCTTTAGTTGATAATCTAATTTCACATTTGCCATGGAATTTGGAAGT
TTTAGTTAACCTGACACATTTGGATCTTAGTCAAAATAAAGTCCAAGAAA
TCCCTGTCACGTTGCTTCAATTACCATGTTTGAGAAGATTAAATCTCTCT
TGTAATCTGATCGAGAGTTTGCCTCAAACAAACAAATGGTCACCGTTGCT
TAGAGCGTTATCTCTTTCTGGAAACTTATTAACATCTTTGCCGAGCAAAA
TCGATTCAAAGATCACATACTTAAGTATTGCAAACAACAAATTCAAAGAG
TTCCCGATGGTGATATGTAATATGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067657-exon-scaffold_472-1491911889:239685..240281 | TCONS_00067657-exon-scaffold_472-1491911889:239685..240281 | Clytia hemisphaerica | exon |
| TCONS_00067657-exon-scaffold_472-1510915933:239685..240281 | TCONS_00067657-exon-scaffold_472-1510915933:239685..240281 | Clytia hemisphaerica | exon |
| TCONS_00067657-exon-scaffold_472-1575043694:239685..240281 | TCONS_00067657-exon-scaffold_472-1575043694:239685..240281 | Clytia hemisphaerica | exon |
| TCONS_00067657-exon-scaffold_472-1491911889:241121..241663 | TCONS_00067657-exon-scaffold_472-1491911889:241121..241663 | Clytia hemisphaerica | exon |
| TCONS_00067657-exon-scaffold_472-1510915933:241121..241663 | TCONS_00067657-exon-scaffold_472-1510915933:241121..241663 | Clytia hemisphaerica | exon |
| TCONS_00067657-exon-scaffold_472-1575043694:241121..241663 | TCONS_00067657-exon-scaffold_472-1575043694:241121..241663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:239685..241663 + |
Blast
The following BLAST results are available for this feature:
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