Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067689 ID=TCONS_00067689|Name=TCONS_00067689|organism=Clytia hemisphaerica|type=transcript|length=1360bpRun BLAST on NCBI protein sequence of TCONS_00067689-protein >TCONS_00067689-protein ID=TCONS_00067689-protein|Name=TCONS_00067689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp MTEMLLYSYFRSSCSWRVRIALALKNIKYEYKPINLLKSEQQSDEYKLINRun BLAST on NCBI transcript from alignment at scaffold_472:258944..272590- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067689 ID=TCONS_00067689|Name=TCONS_00067689|organism=Clytia hemisphaerica|type=transcript|length=13647bp|location=Sequence derived from alignment at scaffold_472:258944..272590- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_472:258944..272590- >TCONS_00067689 ID=TCONS_00067689|Name=TCONS_00067689|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_472:258944..272590- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067689 vs. Swiss-Prot (Human)
Match: MAAI (Maleylacetoacetate isomerase OS=Homo sapiens GN=GSTZ1 PE=1 SV=3) HSP 1 Score: 231.491 bits (589), Expect = 1.175e-72 Identity = 117/211 (55.45%), Postives = 148/211 (70.14%), Query Frame = 1 Query: 484 LLYSYFRSSCSWRVRIALALKNIKYEYKPINLLK--SEQQSDEYKLINPSGSVPCLVTKGHTLTQSQAIMEYLDEVYPDGHALLPKDDSIKRATVRKLSNVIAADIQPVQNLRILKKVGSETKMEWGHWAIHCGFVVLEKMLAETAGKYCFGDEITMVDCCLAPQVYNANRFKVDMSEFPIISRINEELMKHDAFLTSRPEAQPDCPEELR 1110 +LYSYFRSSCSWRVRIALALK I Y+ PINL+K +Q S +++ +NP VP L G T+ QS AI+EYL+E+ P LLP+D KRA+VR +S++IA IQP+QNL +LK+VG E ++ W AI CGF LE++L TAG YC GDE+TM D CL PQV NA RFKVD++ +P IS IN+ L+ +AF S P QPD P ELR Sbjct: 7 ILYSYFRSSCSWRVRIALALKGIDYKTVPINLIKDRGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYLEEMRPTPR-LLPQDPK-KRASVRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNAITCGFNALEQILQSTAGIYCVGDEVTMADLCLVPQVANAERFKVDLTPYPTISSINKRLLVLEAFQVSHPCRQPDTPTELR 215 The following BLAST results are available for this feature:
BLAST of TCONS_00067689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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