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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067909 ID=TCONS_00067909|Name=TCONS_00067909|organism=Clytia hemisphaerica|type=transcript|length=7673bpRun BLAST on NCBI protein sequence of voltage-gated sodium channel Nav2.1 >TCONS_00067909-protein ID=TCONS_00067909-protein|Name=voltage-gated sodium channel Nav2.1|organism=Clytia hemisphaerica|type=polypeptide|length=2231bp MIMRDENLILKKNHFISTTTYPRKRRRSTDSMLSQSLNDADFRHLDHNKNRun BLAST on NCBI transcript from alignment at scaffold_477:321985..394881- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067909 ID=TCONS_00067909|Name=TCONS_00067909|organism=Clytia hemisphaerica|type=transcript|length=72897bp|location=Sequence derived from alignment at scaffold_477:321985..394881- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_477:321985..394881- >TCONS_00067909 ID=TCONS_00067909|Name=TCONS_00067909|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at scaffold_477:321985..394881- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067909 vs. Swiss-Prot (Human)
Match: SCN9A (Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=3) HSP 1 Score: 537.339 bits (1383), Expect = 3.183e-156 Identity = 344/741 (46.42%), Postives = 498/741 (67.21%), Query Frame = 3
Query: 3750 VWMRFQGKVKKLVEHKWFDXXXXXXXXXXXXXXXXEDIRLPERPQLQTALDILNIVFSVLFLIECILKIIGFGVAGYIKNPWNLLDFXXXXXXXXXXXLDKSSDSDSGNLKXXXXXXXXXXXXXXXXVSRWDGMRIVVNSLLKAIPSIGNVLLVCLVFWLIFSILGVQIFGGRFYKCVDG-DGNILDYRIIPNRTEC----DRHPQYYWKNSNVNFDNSLNGFLPLFQVATFEGWIEVMKDAIDATEVDKQPIPGNNXXXXXXXXXXXXXXXXXXLNLFISVIIDNFYRLKKQYDDCGTVEVFLTTEQKQWFSTVKKALTKKPKRIIHRPKNFYQAKLFDFIISPKFESFTMILIFVNIILMMFQHYQQSTDYDRMLYVTNLVFTVIFSIELILRIVALRQQYFLDRWNIFDXXXXXXXXXXXXXEYLDVVLQVTPSVLRVARVLRIGRLLRYFNSAKGIRRLLVALVISLPXXXXXXXXXXXXXXXXXXXGMSNFGYVKKNGALNEVVNFETFGSSMMVLFRLATSAGWNEVLDALMISEP-DCDP---NLNSVPNGNCGTPWIAVAYFVTFILITYLIIVNMYIAVILENFNQAHEQEEIGITDEDIEMFYAVWQLYDPLATQFIDYEKLPFLVANLGPPLGIPFPNKVAVHNLDLPMNDSDEIHCIDVLQALLKRVLGNIENTDTEHYDNMRKTIDMKLQAAFPMRQKEDHKTTTMERLQQVKAASTIQRHFRSWKAR 5945
+W + K+VEH WF+SFI+L+IL SS L FEDI + + ++ L+ + +F+ +F++E +LK I +G Y N W LDF+IV +S+ ++V + SD G +K+LR+LR LR LR +SR++GMR+VVN+L+ AIPSI NVLLVCL+FWLIFSI+GV +F G+FY+C++ DG+ +PNR+EC + WKN VNFDN G+L L QVATF+GW +M A+D+ VDKQP + YIYFV+FII G+FF LNLFI VIIDNF + KK+ G ++F+T EQK++++ +KK +KKP++ I RP N Q +FD + + F+ M+LI +N++ MM + QS +LY N+VF ++F+ E +L++++LR YF WNIFD +VI+S++G+ L L V+P++ RV R+ RIGR+LR AKGIR LL AL++SLPALFNIG LLFL++FIYAI GMSNF YVKK +N++ NFETFG+SM+ LF++ TSAGW+ +L ++ S+P DCDP + S G+CG P + + YFV++I+I++L++VNMYIAVILENF+ A E+ ++++D EMFY VW+ +DP ATQFI++ KL A L PPL I PNKV + +DLPM D IHC+D+L A KRVLG ++ D++R ++ + +A P + + TTT++R Q+ +A+ IQR +R ++ R
Sbjct: 1177 IWWNIRKTCYKIVEHSWFESFIVLMILLSSGALAFEDIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRA---LSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFALMNVSQNVRWKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKL---GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKIQGCIFDLVTNQAFDISIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLRHYYFTVGWNIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIGRILRLVKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEDGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLG-----ESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLR 1906 HSP 2 Score: 300.442 bits (768), Expect = 1.519e-81 Identity = 151/341 (44.28%), Postives = 223/341 (65.40%), Query Frame = 3
Query: 603 ETFLVLASRLGKVYVYRFSKAKSLWAFGPTNPIRKIIIYLITNQIFEFFVILTILVNCVFLALNDAPE---EAEYFFTAIYTTEMVLKIIAKGFVLHNFAYLRDPWNWLDFVVVLLGYVTLAPTITVNFHGIRTFRVLRALRTISAIEGLKTMVNALLKSMRMLSDVLILTAFFLCVFALVGLQLFSGQFHNRCVHNNFTISPYNTSWSSHVSNETNWYKEF---------TICGNNTGSRQCPTNYTCLPHAGPNPNYGFTSYDDFGWALLTSFQLVTLDYWEDVYLHIASSMGPWYVLYFMIVIFFGSFYLINLVLAVVAVSYQQETAQNADLESQYEF 1589
+TF+VL GK ++RF+ +L+ P +P+R+I I ++ + +F ++ TIL NC+F+ +N+ P+ EY FT IYT E ++KI+A+GF + F +LRDPWNWLDFVV++ Y+T + N +RTFRVLRAL+TIS I GLKT+V AL++S++ LSDV+ILT F L VFAL+GLQLF G ++C N+ + S + + +E ++ K F +CG +T S QCP YTC+ G NP+YG+TS+D F WA L F+L+T DYWE++Y + G Y+++F++VIF GSFYLINL+LAVVA++Y+++ N + Q E
Sbjct: 86 KTFIVLNK--GKT-IFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMNNPPDWTKNVEYTFTGIYTFESLVKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNLG-NVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRNSLENNETLESIMNTLESEEDFRKYFYYLEGSKDALLCGFSTDSGQCPEGYTCV-KIGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKEL 421 HSP 3 Score: 206.838 bits (525), Expect = 6.236e-53 Identity = 103/227 (45.37%), Postives = 152/227 (66.96%), Query Frame = 3
Query: 2376 RRKVYRFVMSPWFELAVTIFILLNTVCLAIEHHNMDKNIEFVLQIANHVFTGIFILEMVLKLIALGLIGYTKSMWNIFDGLVVLMSIVDVIIEITIARDNGDFTIIRSLRLFRVLKLAQSWSTMRLLLSAIGRSLNALGNLTLILGIIVYMFAVVGTKVFGASY---VAEKFPENKVPHWNFSNFGHSIMMIFRVLCGEWIEPLYHCMLATG-TWAAAFFMLALIVG 3044
++ +Y VM P+ +LA+TI I+LNT+ +A+EHH M + + VL I N VFTGIF EMVLKLIA+ Y + WNIFD L+V +S+V++ + D +++RS RL RV KLA+SW T+ +L+ IG S+ ALGNLTL+L IIV++FAVVG ++FG SY V + + +P W+ ++F HS +++FRVLCGEWIE ++ CM G +M+ +++G
Sbjct: 734 KKCIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLA-----DVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINDDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIG 955 HSP 4 Score: 115.546 bits (288), Expect = 3.497e-25 Identity = 93/335 (27.76%), Postives = 153/335 (45.67%), Query Frame = 3
Query: 699 IRKIIIYLITNQIFEFFVILTILVNCVFLALNDA-----------PEEAEYFFTAIYTTEMVLKIIAKGFVLHNFAYLRDPWNWLDFVVVLLGYVTL-APTITVNFHG----IRTFRVLRALRTISAIEGLKTMVNALLKSMRMLSDVLILTAFFLCVFALVGLQLFSGQFHNRCVHNNFTISPYNTSWSSHVSNETNWYKEFTICGNNTGSRQCPTNYTCLPHAGPNPNYGF----TSYDDFGWALLTSFQLVTLDYWEDVYLHIASSMG----PWY------VLYFMIVIFFGSFYLINLVLAVVAVSYQQETAQNADLESQYEFLREVAASY 1613
IRK ++ + FE F++L IL++ LA D E A+ FT I+ EM+LK IA G+ Y + W WLDF++V + VTL A T+ + G +RT R LR LR +S EG++ +VNAL+ ++ + +VL++ F +F+++G+ LF+G+F+ C++ T G+ + Q P C + N + ++D+ G L+ Q+ T W + S+ P Y +YF++ I FGSF+ +NL + V+ ++ Q Q L Q F+ E Y
Sbjct: 1181 IRKTCYKIVEHSWFESFIVLMILLSSGALAFEDIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYK----TYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFY-ECIN--------------------------TTDGSRFPASQVPNRSECFALMNVSQNVRWKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQ---QKKKLGGQDIFMTEEQKKY 1481 HSP 5 Score: 94.3597 bits (233), Expect = 9.227e-19 Identity = 59/199 (29.65%), Postives = 104/199 (52.26%), Query Frame = 3
Query: 2334 ANIEENDLTCLQLTRRKVYRFVMSPWFELAVTIFILLNTVCLAIEHHNMD--KNIEFVLQIANHVFTGIFILEMVLKLIALGLIGYTKSMWNIFDGLVVLMSIVDVIIEITIARDNGDFTIIRSLRLFRVLKLAQSWSTMRLLLSAIGRSLNALGNLTLILGIIVYMFAVVGTKVFGASYV-------AEKFPENKVPH 2903
NIE R+ Y+ V WFE + + ILL++ LA E ++ K I+ +L+ A+ +FT IFILEM+LK IA G Y + W D L+V +S+V ++ D G +R+LR R L+ + MR++++A+ ++ ++ N+ L+ I +F+++G +F + +FP ++VP+
Sbjct: 1168 VNIESGKGKIWWNIRKTCYKIVEHSWFESFIVLMILLSSGALAFEDIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPN 1366 HSP 6 Score: 90.1225 bits (222), Expect = 1.479e-17 Identity = 62/192 (32.29%), Postives = 110/192 (57.29%), Query Frame = 3
Query: 2385 VYRFVMSPWFELAVTIFILLNTVCLAIEHHNMDKNIEFVLQIANHVFTGIFILEMVLKLIALGLIGYTKSMWNIFDGLVVLMSIVDVIIEITIAR---DNGDFTIIRSLRLFRVLKLAQSWSTMRLLLSAIGRSLNALGNLTLILGIIVYMFAVVGTKVFGASYVAEKFPENKVPHWNFSNFGHSIMMIFRV 2951
++ V + F++++ + I LN V + +E +++ VL N VF +F E VLKLI+L +T WNIFD +VV++SIV + + I F +IR R+ R+L+L + +R LL A+ SL AL N+ L+L ++++++A+ G F +YV ++ N + +NF FG+S++ +F++
Sbjct: 1508 IFDLVTNQAFDISIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLRHYYFTVG-WNIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIGRILRLVKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNF--AYVKKEDGINDM--FNFETFGNSMICLFQI 1694 The following BLAST results are available for this feature:
BLAST of TCONS_00067909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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