TCONS_00067910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067910
Unique NameTCONS_00067910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067910 ID=TCONS_00067910|Name=TCONS_00067910|organism=Clytia hemisphaerica|type=transcript|length=2655bp
CATGTTACCGAGCATGAAATATACATTAGAAGTTTGTGCTTATAACGCGG
TTGGTAATGGACCATGCGAGAGGCTGACAGTATATACTCTCGACAGCGct
CCTACTTCGCCTCCATTAAACGTTCAAGTAGAAACAGAAAAAACACATGA
CAGTGTTACCATCACATGGGATCACCCAccacaaaacaaaatacacgGAA
CATTATTGACATACAAAATCACTGCAGAATCACTGTCAAAAGCAAATGTC
AATCATGACCTTGCAATTGTCCATAATGTTATCTCAGTACATGGATCGTT
AACAGAGGCAACTATTGATGGATTACAAACTTTTAACGAATACAGACTTA
CAATACAAGCAGTTAACCAGTATGGTGAAGGAATCTCAACCTCAGTTATT
GCAGAAACCTGTCGATGTCCTGAACTCATCTCCACCAATTATTTTGTCCT
AAAGCCTTACTTATACCGCGATACCGATGGTGAATTAAACGGTCTCTTCC
CGAAAGTTCTAAACGAGATGGTACAAGCTGCCTGTGGACAATGTACTCGC
CCTCAAAATGCATTAGACAGTATACTAGATAAGGAGAAGACTGGTCGAGG
AGGGTTAGCACAAAAGGCCACTGCAAAAGAAGCTATTCAAGATATAGACC
AGTATACAGAACTCACTTTTCCAGTAGCAGCACATGATGAAATGTCTGAA
TTCATGGGGTACAAATTCATTTCCTTGGTACATCACCCTGGAATCGCAGT
CGTTGTCAAGGTTATGACTATAAATGACATGATTGAAACACTGATTGGAG
ATATGTTGAAAATATGGCCCatctttttgttgaatttcttatTTATGGTC
ATTGTGGGATTCTTGGTTTGGATAATGGAAAACCCGCGTCTTTATAACGA
GGGAGATTTTTCCACCGGTGCATTACGTGGTATTTTTGAAGGCTGGTATT
GGGCTTTTGTAACTCAAGGTAGTCAAGGATTTGGTGATTTCATCCCACGC
CGTATTCAATCACGCGTTCTGGCCATGGTCTGGTCATTAATCGGTATTAT
CATGAACTCACTGATTGTTGGATCACTCGTCACAACTCTTATGTCTCTCA
ATATTCAAAATGATGTCAAGTTATATGGCACTAAGGTGGCCGTAATGAAA
GATTCCATTGAAGAAAATACGGCAGTTCGTCGTAATGCAGAACCGGTGCC
TAAACTATCGATCGAGGAGATGAAAAGGGCCTTATTGAATGGTGATGTCG
ACGCAATGCTTATGGATGTGTATACACTAGCAGAATACCCTGAAATTACA
TCTAGCTCTGAATTTGATGTTAAAGAAATTATACATGCACGAAAAGCGTA
CGGATTTGTGTTAGCAGGTGCATTGGAGAATGTGGCGAACGCTGTCGATG
TTTACATCAAGAGCAATGAAGATCGAATCCTCAATATCATTTCTAACCAG
ACCAAACCACTTACTATAATTGACAGATCAGGCGAAGTGAAATCTATCTT
CGATCCAGACTCCAAACCACTTCATACAACACTCATCGTGGTCTTCATTC
TTATAGCTGTTTTATCCTGTATTGGTTTTTTCGTTCATCAAATCAGAATC
AGAAGAAATAGAGTGGTGCCCGAGTACCTATTGGAATGTTCAAAACAGAA
AACCAATCAGGAGCTATCAAAGCACGTTGATGAATTCGTCACAAATTACC
CAAAAATTCTCGAAAGCATTTGCAACCGGTACGAGAAGGAGATTGTCGGT
AGACACGTAAAGCCTCATTTACATTGCCTTCGTCGACGTAAGCGGAGAGT
TACACCATCTACACCAAGAGATTCAGAAAACGGTGACGTAGATGTGGCCC
GGGAGAATTTATACGCTATAACACCGTCACAATCAGTATTCATACGTCAC
GGCGTTGAATCATTAGACGGAAGTTTCTTTATGACGAGAAATTCCTTGTT
TAACGAAAACGATGATGATGTTTTCGTTGAACGACAAACGACAAGAACTC
CTCGAGAATTTGAACGACCTTTAACGAGTTGGGAAAATCATGACCCTTGC
GCAATAATTGACGAAAACGATCCTTTGGAGGGTCCTGAGGCGCCGGTTAC
GAGTCGAATTAAAGGTCCAGAGCCAAGAACTCAGAGCCGTGCTTCTATAG
TACGTACAAGTAGTAAAAACGTTGATCAGACACCAGACGATGATGAAGGA
CTACCAGTTTTGATACATTTtccaaaagacaaaaaagatgTCGAAAAAGT
CGGTGGATAGTATAATAACTCGGAATAACAAAGAAACTCGATGGCTAAAA
AAggcaaactttttaatttttgatttgacCCATCATCTTTCAGGTGACCC
AGAGTTTACATATTTTTACAACACAAAAGGACTTCGAAAACTATTGCAGT
GGAAAGAACGTGAACAGCAGTGATTTACACGAAATTCTTTCCCATTCGGC
AGAAGACATAGTAAAGAAATGTATACCCGATTATTTGGACCACAATGGTA
TCACTTCATACCAAATGAATTATTGTTGATTCCATTTTAGTTTTAAATGT
TTCAAATTTTACGTCCAAACATTGTAAATACTAAGAGAGTGtaaatagat
tttttatttttgataacgcactaaattttattgtttaaaatataTTCGAA
TCGtg
Run BLAST on NCBI

protein sequence of TCONS_00067910-protein

>TCONS_00067910-protein ID=TCONS_00067910-protein|Name=TCONS_00067910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=752bp
MLPSMKYTLEVCAYNAVGNGPCERLTVYTLDSAPTSPPLNVQVETEKTHD
SVTITWDHPPQNKIHGTLLTYKITAESLSKANVNHDLAIVHNVISVHGSL
TEATIDGLQTFNEYRLTIQAVNQYGEGISTSVIAETCRCPELISTNYFVL
KPYLYRDTDGELNGLFPKVLNEMVQAACGQCTRPQNALDSILDKEKTGRG
GLAQKATAKEAIQDIDQYTELTFPVAAHDEMSEFMGYKFISLVHHPGIAV
VVKVMTINDMIETLIGDMLKIWPIFLLNFLFMVIVGFLVWIMENPRLYNE
GDFSTGALRGIFEGWYWAFVTQGSQGFGDFIPRRIQSRVLAMVWSLIGII
MNSLIVGSLVTTLMSLNIQNDVKLYGTKVAVMKDSIEENTAVRRNAEPVP
KLSIEEMKRALLNGDVDAMLMDVYTLAEYPEITSSSEFDVKEIIHARKAY
GFVLAGALENVANAVDVYIKSNEDRILNIISNQTKPLTIIDRSGEVKSIF
DPDSKPLHTTLIVVFILIAVLSCIGFFVHQIRIRRNRVVPEYLLECSKQK
TNQELSKHVDEFVTNYPKILESICNRYEKEIVGRHVKPHLHCLRRRKRRV
TPSTPRDSENGDVDVARENLYAITPSQSVFIRHGVESLDGSFFMTRNSLF
NENDDDVFVERQTTRTPREFERPLTSWENHDPCAIIDENDPLEGPEAPVT
SRIKGPEPRTQSRASIVRTSSKNVDQTPDDDEGLPVLIHFPKDKKDVEKV
GG
Run BLAST on NCBI

transcript from alignment at scaffold_477:401412..410483-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067910 ID=TCONS_00067910|Name=TCONS_00067910|organism=Clytia hemisphaerica|type=transcript|length=9072bp|location=Sequence derived from alignment at scaffold_477:401412..410483- (Clytia hemisphaerica)
CATGTTACCGAGCATGAAATATACATTAGAAGTTTGTGCTTATAACGCGG
TTGGTAATGGACCATGCGAGAGGCTGACAGTATATACTCTCGACAGCGGT
AAGTTAATCTAGTAATGTTTGAAAAATCTTTTGTTAGCCTAATCTAAGGA
TTCTTTATGAAATTAAAAAGTATTTCAAGCATTTGGCTTAATAATTCTTT
GATACACATGACCCCTCCCTGACAACTTTTATCACAAGGATTGTTAAGTT
TACAAGGGTCGAACGACGTTAAATATCTTTGAATTGAGCTAATTTTAGGA
TTGAAAATTCAATCATCTCTATTCTGATACCAAAAGATTCTTATATTATA
TGAATCTTTTTCCTTTCGAATTTTTAAACTCGAACGTCAAATAGGTAAGT
GGTGCAATTGGCTATGGGTACGACAAGATTAGCTCGAACTATGATCTCGA
TAAATTATTTCCCTTTTTCCAATTTTTAGCTCCTACTTCGCCTCCATTAA
ACGTTCAAGTAGAAACAGAAAAAACACATGACAGTGTTACCATCACATGG
GATCACCCACCACAAAACAAAATACACGGAACATTATTGACATACAAAAT
CACTGCAGAATCACTGTCAAAAGCAAATGTCAATCATGACCTTGCAATTG
TCCATAATGTTATCTCAGTACATGGATCGTTAACAGAGGCAACTATTGAT
GGATTACAAACTTTTAACGAATACAGACTTACAATACAAGCAGTTAACCA
GTATGGTGAAGGAATCTCAACCTCAGTTATTGCAGGTATGCTAGCATCAT
TGTTACTTTCATTACCTTTGCGTTTGATAAAAATATATCTTTCAGCTTTA
AAACATCCCTGTCTCAGTGAATCGGTTAGAACCTCAGCCACTCGAGATGA
TGAATTCCAATGGAGATGGAAAATTTCTTTTAATTAGATGTAGATTTAAA
GATTAGAGCTATTGTTGACTCCCTCTAATTCGATTTTACAGGGAGAGAGA
ATTATTCTCCGAATAAGAGAACATTCGATATAAGAGAGCTGATTGTAAAA
CATCCAATAGGGATGACCTACAATCGTTGCCAATATATTATGGATGCTCA
TTTTTGTGCTTTGTGCCATAGGTTTTTCCAATGATTGTAGACTTTTCTCT
TTTGACCTATTCTTTTCTCAACAGTACGCCATAGGTATATACACTTAATC
AAATCAATTAACATTTTAGAAACCTGTCGATGTCCTGAACTCATCTCCAC
CAATTATTTTGTCCTAAAGCCTTACTTATACCGCGATACCGATGGTGAAT
TAAACGGTCTCTTCCCGAAAGTTCTAAACGAGATGGTACAAGCTGCCTGT
GGACAATGTACTCGCCCTCAAAATGCATTAGACAGTATACTAGATAAGGA
GAAGACTGGTCGAGGAGGGTTAGCACAAAAGGCCACTGCAAAAGAAGCTA
TTCAAGATATAGACCAGTATACAGAACTCACTTTTCCAGTAGCAGCACAT
GATGAAATGTCTGAATTCATGGGTAGGTTTTACTTTTACCAACACTTCTC
TTCACCCCCTTCTCACAGACCCGGTAGGATTTTTTCAGCCAGTGGGGATA
AAAATAACGGACTGAAACTCGATGGGGATTGATATTCACATATTTTTCAT
GAATGGGGATTTCAATTCTTTTGTTTTCAAGTCCATAGCATTCAGTGGGG
ATGGGAAAATAATAAATATTTCGAAGTGAGGATTGGTTTATTTGATTATT
TTCAGTGGGGACAAAAATTGGAGGATAATTTTCCACCGGGGATGATATTT
TGGTGATTTTTTTCCAGTGGAAAGGGTCCCCAGTGGGTCTGTGAGAAGGG
TGTGTTTCTCTCTTGTATCAATTCCAAACTGAGAATATATAACACTAAAA
CAATAGGTTAACATCAAACATCAGAATTTTGTAAAAGTATTTGCTTTTAG
AAGTTAAACTTGATTAACTGTAGAATGATTTAGGAAAGCGTTTGTCACAT
GGAAAAACTTATCTGACTGAGAAATTGGCTTACCTACTACAATACACGTT
GCAATTTAGACGTGAAAACAAAATGCAATTATTTCTATAAAAGAGCGGAA
ACTCATACATATCCTATGCTCAAACTCAAAGAGAACAATGTATAGTCTAA
AAGGCGCATCCCAGCTGACAGACAACGTTGTTTCAACATTCATCTTTAAC
GTTATATGGACGTTGTGAACATTAGATAAACGTTGAAACAACGTTGTGTG
CCAACTGGGATGGATATAAACTACTCAATCTTTTTTTCCAGGGTACAAAT
TCATTTCCTTGGTACATCACCCTGGAATCGCAGTCGTTGTCAAGGTTATG
ACTATAAATGACATGATTGAAACACTGATTGGAGATATGTTGAAAATATG
GCCCATCTTTTTGTTGAATTTCTTATTTATGGTCATTGTGGGATTCTTGG
TTTGGATAATGGTATGTCTACTTTCAGTAATTTTACGTTTACTTTCAGTA
ATTTTACGTTTACTTTCAGTAATTTTACGTTTACTTTCAGTAATTTTACG
TTTACTTTCAGTAATTTTACGTTTACTTTCAGTAATTTTACGTGTACTTT
CAGTAATTTTACGTTTACTTTCAGTAATTTTACGTTTACTTTCAGTAATT
TTACGTGTACTTTCAGTAATTTTACGTTTACTTTCAGTAATTTTACGTTT
ACTTTCAGTAATTTTACGTGTACTTTCAGTAATTTTACGTTTACTTTCAG
TAGTTTTACGTTTACTTTCAGTAATTTTACGTTTACTTTTAGTAATATTA
AGTGAATCAGTAATCTAGGAATTCTAGAGAACCTTAATCTGGATAATGGC
ATGCTTGCAAAAAAAATTCTATTCCAGTAGTCTCTAAATGACACACTAGT
TATTTTTGGCTAATTATTCTAAAACTAAAAAACTTCAGAATGAAAATATA
TTTTTTTTGTATTCAAAAGTTTCAAAATAATTTTGCGCCTCTCTTGGCTA
CGCTACTGTCATGTGATCAAAACAGGAGAAAAACAAAGCAATTTTTTACT
CGCAAGTTCGACAACCGATTTGCCAGCCAAGGTTTTTATGTACGGCGGAC
TATACACTATTTTTATCTTTTCCCCGTAGGAAAACCCGCGTCTTTATAAC
GAGGGAGATTTTTCCACCGGTGCATTACGTGGTATTTTTGAAGGCTGGTA
TTGGGCTTTTGTAACTCAAGGTAGTCAAGGGTGAGTAAATGTTTCGTGTG
CAAAAAGACAAATTCTACCTTTCGATTGTTTTACAAACTAAAAACCCCTT
GAACTAGACTGGAGTCGTTTATAATGTATGTAATACTAATAATATCAATA
CTAATAATAATAATACGGGATTTAGTTTGTATAAACGACTGGAAGAATCC
GGTGTTCCAGCCTTATAGATACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTATAATTGCAATATTG
ACACTTTTCCTTTGTTTGGAGTTAGTGCACAAAGGTTTCTAGACGACTAA
GATTGTTCCATTCATTACTTTTTGCTTTATTTCTACTACACGCTTTTTTT
TTTATAAGAATGGTGTTTTTTCATTTCATCATGGATATTCTTAACTTTTT
GGCGAAAATCATCCAAAAATATTCTTACGGTATTCTTAGGTTAAGATCGA
CATTGGCAATCTACAGGTTAAAATGCATTAAAAATGGCATTCTTAGGTTC
AGTTGCTAAATTCCATGATGGTGATATTCTTACCATATTCTTAATTTTTT
GGCCATTTTCATCATGGACATTCTTATAAAGTGTATTCTTATAAAAAAAA
AAGCGTGTATGTATAAATTAGTCGTCTAGCTTGCTAGACTACCCTTGAAC
AGGCTTTAAACATTTATCTTTTGGACTGAAATAATCAATGAGTCTGTTAT
TTATGATAGCGGAGTAGTCTAGTTCAGTAGACTAATTCAAGCATAGTAAA
AAAATGAGCACAAAAAAATAATGAAACAAACAAATAGATCTTATCGGAGT
GATGCATTGTGGGATTTTTTCGGGGTTATTACAATATAAATCTCTTAGGA
ATTCATCGAGGGAATTCTATTGTAATACGCCCGAAACAATCCAACGATGC
ATCACTGTTTTAGAAAAATCAAAAATTTCGATAAGGTCTATTGTAGTTTG
AGCAAACTGATATTATCCCGTAACAATCATCGTATAGAACCCATATTATA
CTGTACTATACGGATCATAAACGACTCAAGTCTAGTAGCGGATTCACCAC
TAGCTCGAGTTAAAACTGCAGTTTTGACATCCGTCTTATTTCTTTAGATT
TGGTGATTTCATCCCACGCCGTATTCAATCACGCGTTCTGGCCATGGTCT
GGTCATTAATCGGTATTATCATGAACTCACTGATTGTTGGATCACTCGTC
ACAACTCTTATGTCTCTCAATATTCAAAATGATGTCAAGTTATATGGCAC
TAAGGTTCGGATTTTTTTATAACCCTATCATACATGCATAGTAATTAGTC
ATAATAGTTGGGAAAAAGGAGCATTCCCTCCAATTATAAAATCCACAATT
GTATTGATTTTAAAGTTGTTTAACTTCAAATTCAGTAATGTAAAGTTTTA
AATTTGAGTTTTTACAAATTTAGAATTAAAATTTAGGATGAGCTTAGGGT
ATAAGGAAGGTTATAAGTTTGTAAGGTAGTGAGGTTGGGAATATAGCCTG
GTAGCCCTCTCAAATCGAAATGCCCGAGGTAATAGAGTAGAAAATAGCTA
ATTCCAGCATTCTCGCCCGAATTCTTAATTCAGATTATTCATGAGATACT
ACCACTATAGTAGAAACTTACCAAAGAAAATTTGCACTGAGATTTGTTTT
GACCTTTTTACCCACTGAAGTTTGAATAGACTAAGCTCTAGTTTAGACGG
CCCACTTTTTGCCCTGCCTATTCTAATTGTGAATTAAAGAGGGCATAAAG
TGGGCTGTCTAAAGTGATGCATAGCCCTCTTTTGACGTCAATGCAATGTC
TTCTTTCAAACCTTTCCAAACAAAGATTTTAACAACCAACTTTGTGCCCT
CTTTCTGCCTACTTTAATAATTAGAATAGGCAGGGCAGAAAGTCGGCCGT
CTAAACTAGAGCTAACTTCTCACTTTCCAGGTGGCCGTAATGAAAGATTC
CATTGAAGAAAATACGGCAGTTCGTCGTAATGCAGAACCGGTGCCTAGTA
GGTTTCCTTTCTTTATTATCAAACTTCTCAAAATGTAGTAACCCAGATCT
CATTTATTGTACCTCAGAGACCCGGTAGGATTTGTTTCAGCCAGTGGTTG
TAAAAATAACGGACTGAAATTCAATAGGATTGATATTTCCATGTTTTTAT
GGCTGGGGATCTAAATTAGTTAAAGTTAGAAAATTCAGTGGGGATGAGAA
AATAGCATAATATTTTGCAGTGAGGATTCGCTTATTCGAATATTTTCAGT
GGGGAAAAAATTGGAGTATAAATTTCCACCGTGGGACGATATTTTGACCA
ATTTTTCCAGTGGGAAGGGGTGTAACGTCGGCTTTCTTTTGCATCTTTAT
GGAATGTTTCCGCCCTCAATTAGCAATGAATTAGGCTATCAGATCCTGCT
TTGCTTCAACCGTAAAACCTTTTCAAAGAGAGACTTAAAAACATATGGAT
GTGTCCATTGTGTAGTCTATGGATTATCTACCAAAAGTTTGAAAAGGTCA
AGCTCAGATCCGCAGCTAATCATTTATCGTCTTTTTTCCTAGAACTATCG
ATCGAGGAGATGAAAAGGGCCTTATTGAATGGTGATGTCGACGCAATGCT
TATGGATGTGTATACACTAGCAGAATACCCTGAAATTACATCTAGCTCTG
AATTTGATGTTAAAGAAATTATACATGTAAGCGCATATCATAATTTATTG
AAAGCTTTGACTTTATTTGGGGGGAGGGGGCAATCAGTCAAATTGACCGA
CGGGTATGTGTGGCGGCTAAGGGTATGTTTTTCAAGATATCAAAAAATTC
ACTCTAAGAGTGGACTTTTGAAAATGCACTGTAAGGGTGAAAGTTTCATC
AAATCCAGGAAAAATTGCAATTTTTGCCTGAAAATTCTGTTTTTTTTTGT
TCTATAAGAGTTAAAATTATGAGAAAAATGCATATTAAGGGTACAAATTT
CACCGATCCTGCTCAGACTATTTTAAATAATCTTAAAACAGATTATCCGT
CACCATGCTCTGTCTTAAAGGGTCGTGTCGAATATGATAAGGATGAGATC
GAAGCTTGAGTAACAATCAAAATCTGCTTGGAAATCACATTCTAACGAGC
AAAAAGTTTTTTTATGCCTTTTGGATATTGAAAGATTAGAGGACCCAAAC
CTTTCTCAATTTTTCTTAGAAAGAAAGTATAGAAGTATTCTTTGTCTTCT
TTACAGGCACGAAAAGCGTACGGATTTGTGTTAGCAGGTGCATTGGAGAA
TGTGGCGAACGCTGTCGATGTTTACATCAAGAGCAATGAAGATCGAATCC
TCAATATCATTTCTAACCAGACCAAACCACTTACTGTAAGTTAGCCTATT
TCATAGGATTCGTGCATCTGTTACAATGCTTTTTCCTCTTTTCAAAGAGG
AAAATGCACAAATCTGTGCAGATTTCCTTTCAAGAAATACGTTAAAAAAA
TTGATTGTTATTGTCATCATACAAATAACTTGATTTAAGAGCTCTTCTTC
ATAGTTGTTGCTTTGGAAATCTTGTCTAATACCGCTGAAAGAGTGCTTTT
AGATGACAGGAGTCAGATACACAGAGCTTAATATAAACCCTCAGGGGCCG
TTTCTCATTCACGACAAACCAAAATCATTTCATGAGAGCTTTTTTGAAAG
TGCTACGCTTTTCTTAGCACTGCCTAACGGCGGCAGATAAGGTTTGATAG
ATAGCACGGGGTAGTTCAAGATAAAAAGATCTATTCAGACAATCATTTCT
GCTCCTCCGCAAACTGTCACATCTGTTAGCGAGCAATAAAACATTGAACT
CTCGCTACAGTAATTCGAATTTCTATCATTTCCCATTCGAGCTCTAATTA
GATGTTTATAAAAGTAAACTTATACCAAACTCTATCCAAGATTTCCTTCA
TACATAACTTTCTTACCCAGCTTCATTTTCTGTTACAGATAATTGACAGA
TCAGGCGAAGTGAAATCTATCTTCGATCCAGACTCCAAACCACTTCATAC
AACACTCATCGTGGTCTTCATTCTTATAGCTGTTTTATCCTGTATTGGTT
TTTTCGTTCATCAAATCAGAATCAGAAGAAATAGAGTGGTGCCCGGTAAG
TTAAAACTAGCCCTCAGGATCTTTGAGTCTCATTTTAAAACTAATTTGAT
TTCAACCTCGAGTTCTAGGCCCAGGTCAGATTTTCCAAAATTTTACACCC
GTGCACTCTTTCTCGTTTTGGAAGGCTTGGAAAAATGATCCTTAAGGGCC
GCACGTACTGTAAGTCGTTTACCTTGAGTGTCCCTCCCCCCCGGATTAGG
TCGAATGTAAAAGTAAACCTCATGTTTTAGAATGTTTATTTTTTATTTGT
CATAAATTTGATTAAGTCCTTCATCATGGCAAGAGGGTCCACAGTTAATT
CAGACTTGACTTACTGCAACTCAACTTACTTGGAGACTAGGAACAGTACA
CCATATTTTTTGAAAGACAAGTGGGCTTTCCTTCAATAATCTTTATAATC
AANAGTACACCATATTTTTTGGAAGACAAGTGGGCTTTCCTTCAATAATC
TTTATAATCAATGGATCTATTATTTTTCGTCTTCCACAGAGTACCTATTG
GAATGTTCAAAACAGAAAACCAATCAGGAGCTATCAAAGCACGTTGATGA
ATTCGTCACAAATTACCCAAAAATTCTCGAAAGCATTTGCAACCGGTACG
AGAAGGAGATTGTCGGTAGACACGTAAAGCCTCATTTACATTGCCTTCGT
CGACGTAAGCGGAGAGTTACACCATCTACACCAAGAGATTCAGAAAACGG
TGACGTAGATGTGGCCCGGGAGAATTTATACGCTATAACACCGTCACAAT
CAGTATTCATACGTCACGGCGTTGAATCATTAGACGGAAGTTTCTTTATG
ACGAGAAATTCCTTGTTTAACGAAAACGATGATGATGTTTTCGTTGAACG
ACAAACGACAAGAACTCCTCGAGAATTTGAACGACCTTTAACGAGTTGGG
AAAATCATGACCCTTGCGCAATAATTGACGAAAACGATCCTTTGGAGGGT
CCTGAGGCGCCGGTTACGAGTCGAATTAAAGGTCCAGAGCCAAGAACTCA
GAGCCGTGCTTCTATAGTACGTACAAGTAGTAAAAACGTTGATCAGACAC
CAGACGATGATGAAGGACTACCAGTTTTGATACATTTTCCAAAAGACAAA
AAAGATGTCGAAAAAGTCGGTGGATAGTATAATAACTCGGAATAACAAAG
AAACTCGATGGCTAAAAAAGGCAAACTTTTTAATTTTTGATTTGACCCAT
CATCTTTCAGGTGACCCAGAGTTTACATATTTTTACAACACAAAAGGACT
TCGAAAACTATTGCAGTGGAAAGAACGTGAACAGCAGTGATTTACACGAA
ATTCTTTCCCATTCGGCAGAAGACATAGTAAAGAAATGTATACCCGATTA
TTTGGACCACAATGGTATCACTTCATACCAAATGAATTATTGTTGATTCC
ATTTTAGTTTTAAATGTTTCAAATTTTACGTCCAAACATTGTAAATACTA
AGAGAGTGTAAATAGATTTTTTATTTTTGATAACGCACTAAATTTTATTG
TTTAAAATATATTCGAATCGTG

Coding sequence (CDS) from alignment at scaffold_477:401412..410483-

>TCONS_00067910 ID=TCONS_00067910|Name=TCONS_00067910|organism=Clytia hemisphaerica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_477:401412..410483- (Clytia hemisphaerica)
ATGTTACCGAGCATGAAATATACATTAGAAGTTTGTGCTTATAACGCGGT
TGGTAATGGACCATGCGAGAGGCTGACAGTATATACTCTCGACAGCGCTC
CTACTTCGCCTCCATTAAACGTTCAAGTAGAAACAGAAAAAACACATGAC
AGTGTTACCATCACATGGGATCACCCACCACAAAACAAAATACACGGAAC
ATTATTGACATACAAAATCACTGCAGAATCACTGTCAAAAGCAAATGTCA
ATCATGACCTTGCAATTGTCCATAATGTTATCTCAGTACATGGATCGTTA
ACAGAGGCAACTATTGATGGATTACAAACTTTTAACGAATACAGACTTAC
AATACAAGCAGTTAACCAGTATGGTGAAGGAATCTCAACCTCAGTTATTG
CAGAAACCTGTCGATGTCCTGAACTCATCTCCACCAATTATTTTGTCCTA
AAGCCTTACTTATACCGCGATACCGATGGTGAATTAAACGGTCTCTTCCC
GAAAGTTCTAAACGAGATGGTACAAGCTGCCTGTGGACAATGTACTCGCC
CTCAAAATGCATTAGACAGTATACTAGATAAGGAGAAGACTGGTCGAGGA
GGGTTAGCACAAAAGGCCACTGCAAAAGAAGCTATTCAAGATATAGACCA
GTATACAGAACTCACTTTTCCAGTAGCAGCACATGATGAAATGTCTGAAT
TCATGGGGTACAAATTCATTTCCTTGGTACATCACCCTGGAATCGCAGTC
GTTGTCAAGGTTATGACTATAAATGACATGATTGAAACACTGATTGGAGA
TATGTTGAAAATATGGCCCATCTTTTTGTTGAATTTCTTATTTATGGTCA
TTGTGGGATTCTTGGTTTGGATAATGGAAAACCCGCGTCTTTATAACGAG
GGAGATTTTTCCACCGGTGCATTACGTGGTATTTTTGAAGGCTGGTATTG
GGCTTTTGTAACTCAAGGTAGTCAAGGATTTGGTGATTTCATCCCACGCC
GTATTCAATCACGCGTTCTGGCCATGGTCTGGTCATTAATCGGTATTATC
ATGAACTCACTGATTGTTGGATCACTCGTCACAACTCTTATGTCTCTCAA
TATTCAAAATGATGTCAAGTTATATGGCACTAAGGTGGCCGTAATGAAAG
ATTCCATTGAAGAAAATACGGCAGTTCGTCGTAATGCAGAACCGGTGCCT
AAACTATCGATCGAGGAGATGAAAAGGGCCTTATTGAATGGTGATGTCGA
CGCAATGCTTATGGATGTGTATACACTAGCAGAATACCCTGAAATTACAT
CTAGCTCTGAATTTGATGTTAAAGAAATTATACATGCACGAAAAGCGTAC
GGATTTGTGTTAGCAGGTGCATTGGAGAATGTGGCGAACGCTGTCGATGT
TTACATCAAGAGCAATGAAGATCGAATCCTCAATATCATTTCTAACCAGA
CCAAACCACTTACTATAATTGACAGATCAGGCGAAGTGAAATCTATCTTC
GATCCAGACTCCAAACCACTTCATACAACACTCATCGTGGTCTTCATTCT
TATAGCTGTTTTATCCTGTATTGGTTTTTTCGTTCATCAAATCAGAATCA
GAAGAAATAGAGTGGTGCCCGAGTACCTATTGGAATGTTCAAAACAGAAA
ACCAATCAGGAGCTATCAAAGCACGTTGATGAATTCGTCACAAATTACCC
AAAAATTCTCGAAAGCATTTGCAACCGGTACGAGAAGGAGATTGTCGGTA
GACACGTAAAGCCTCATTTACATTGCCTTCGTCGACGTAAGCGGAGAGTT
ACACCATCTACACCAAGAGATTCAGAAAACGGTGACGTAGATGTGGCCCG
GGAGAATTTATACGCTATAACACCGTCACAATCAGTATTCATACGTCACG
GCGTTGAATCATTAGACGGAAGTTTCTTTATGACGAGAAATTCCTTGTTT
AACGAAAACGATGATGATGTTTTCGTTGAACGACAAACGACAAGAACTCC
TCGAGAATTTGAACGACCTTTAACGAGTTGGGAAAATCATGACCCTTGCG
CAATAATTGACGAAAACGATCCTTTGGAGGGTCCTGAGGCGCCGGTTACG
AGTCGAATTAAAGGTCCAGAGCCAAGAACTCAGAGCCGTGCTTCTATAGT
ACGTACAAGTAGTAAAAACGTTGATCAGACACCAGACGATGATGAAGGAC
TACCAGTTTTGATACATTTTCCAAAAGACAAAAAAGATGTCGAAAAAGTC
GGTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042411XLOC_042411Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067910-proteinTCONS_00067910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067910-exon-scaffold_477-1575043694:410386..410483TCONS_00067910-exon-scaffold_477-1575043694:410386..410483Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:409699..410004TCONS_00067910-exon-scaffold_477-1575043694:409699..410004Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:408962..409264TCONS_00067910-exon-scaffold_477-1575043694:408962..409264Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:408023..408192TCONS_00067910-exon-scaffold_477-1575043694:408023..408192Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:407254..407354TCONS_00067910-exon-scaffold_477-1575043694:407254..407354Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:405780..405936TCONS_00067910-exon-scaffold_477-1575043694:405780..405936Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:405037..405103TCONS_00067910-exon-scaffold_477-1575043694:405037..405103Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:404358..404491TCONS_00067910-exon-scaffold_477-1575043694:404358..404491Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:403699..403827TCONS_00067910-exon-scaffold_477-1575043694:403699..403827Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:402939..403095TCONS_00067910-exon-scaffold_477-1575043694:402939..403095Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1575043694:401412..402444TCONS_00067910-exon-scaffold_477-1575043694:401412..402444Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:410386..410483TCONS_00067910-exon-scaffold_477-1510915933:410386..410483Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:409699..410004TCONS_00067910-exon-scaffold_477-1510915933:409699..410004Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:408962..409264TCONS_00067910-exon-scaffold_477-1510915933:408962..409264Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:408023..408192TCONS_00067910-exon-scaffold_477-1510915933:408023..408192Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:407254..407354TCONS_00067910-exon-scaffold_477-1510915933:407254..407354Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:405780..405936TCONS_00067910-exon-scaffold_477-1510915933:405780..405936Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:405037..405103TCONS_00067910-exon-scaffold_477-1510915933:405037..405103Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:404358..404491TCONS_00067910-exon-scaffold_477-1510915933:404358..404491Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:403699..403827TCONS_00067910-exon-scaffold_477-1510915933:403699..403827Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:402939..403095TCONS_00067910-exon-scaffold_477-1510915933:402939..403095Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1510915933:401412..402444TCONS_00067910-exon-scaffold_477-1510915933:401412..402444Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:410386..410483TCONS_00067910-exon-scaffold_477-1491911889:410386..410483Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:409699..410004TCONS_00067910-exon-scaffold_477-1491911889:409699..410004Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:408962..409264TCONS_00067910-exon-scaffold_477-1491911889:408962..409264Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:408023..408192TCONS_00067910-exon-scaffold_477-1491911889:408023..408192Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:407254..407354TCONS_00067910-exon-scaffold_477-1491911889:407254..407354Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:405780..405936TCONS_00067910-exon-scaffold_477-1491911889:405780..405936Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:405037..405103TCONS_00067910-exon-scaffold_477-1491911889:405037..405103Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:404358..404491TCONS_00067910-exon-scaffold_477-1491911889:404358..404491Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:403699..403827TCONS_00067910-exon-scaffold_477-1491911889:403699..403827Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:402939..403095TCONS_00067910-exon-scaffold_477-1491911889:402939..403095Clytia hemisphaericaexon
TCONS_00067910-exon-scaffold_477-1491911889:401412..402444TCONS_00067910-exon-scaffold_477-1491911889:401412..402444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:401412..410483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0145044	0	0.0164226	0	0.01956	0.0154566	0.111886	0.0523732	0.207784	0.105977	0.161644	0.0676189	3.42448	2.21396	0.0164721	0	0.0435536	0.0111603	5.22687	7.19592	0.0701183	0.0615623	0	0.030239	0.0934363	0.0138983	0.0198884	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR001638Solute-binding_3/MltF_N
IPR013099K_chnl_dom
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top