TCONS_00067911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067911
Unique NameTCONS_00067911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067911 ID=TCONS_00067911|Name=TCONS_00067911|organism=Clytia hemisphaerica|type=transcript|length=597bp
TGCGAATTTTACCATCCATTATTCGGGGTTCGATTCGTATCAATTCGTCT
TACTTCAAGATAGTATAGATGTGGATAATTCGATCGGGAAATTAGATCTT
CTACCGTCTAACGTGCAATATAAAATTGGACCTAATGTATTAAATTCTGG
ACCCAGCTCAATCACAGCGCTGCCTCGATCCTCTACAGAACTTCTTATTG
AGTGGAGTTTGATGTCAAATCCTGGTATCATTGCTTATGTGGTATTGTAT
CGTGAAAAATTATTGACAAGCCAAAAATATAAATCCATTGGCACTGACCA
GAATAATGCTGTTTTAAGAAACTTGAGGCCAGGAACTGGATATAGTGTAC
GTGTAATGGCGTACACAAGTGATGGGAATGGAGCAGCTTCAGATCTAGTG
CATGGTACTACATTCGAAACAATTCCAAGCGCTCCACCGACTAACATGCA
GATTATCGATAGAACCGCGTTCTCTCTTGATCTTCAATGGGACGGTGTAC
CTACACAATACATGAACGGAGTACCTTTAGGATACAAAATCAGCAGCTAT
TCGCATGGAGTTTTGACTAGCACAACAACTGTTGATTTCATAACTAC
Run BLAST on NCBI

protein sequence of TCONS_00067911-protein

>TCONS_00067911-protein ID=TCONS_00067911-protein|Name=TCONS_00067911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
ANFTIHYSGFDSYQFVLLQDSIDVDNSIGKLDLLPSNVQYKIGPNVLNSG
PSSITALPRSSTELLIEWSLMSNPGIIAYVVLYREKLLTSQKYKSIGTDQ
NNAVLRNLRPGTGYSVRVMAYTSDGNGAASDLVHGTTFETIPSAPPTNMQ
IIDRTAFSLDLQWDGVPTQYMNGVPLGYKISSYSHGVLTSTTTVDFIT
Run BLAST on NCBI

transcript from alignment at scaffold_477:410570..412682-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067911 ID=TCONS_00067911|Name=TCONS_00067911|organism=Clytia hemisphaerica|type=transcript|length=2113bp|location=Sequence derived from alignment at scaffold_477:410570..412682- (Clytia hemisphaerica)
TGCGAATTTTACCATCCATTATTCGGGGTTCGATTCGTATCAATTCGTCT
TACTTCAAGATAGTATAGATGTGGATAATTCGATCGGGAAATTAGATCTT
CTACCGTCTAACGTGCAATATAAAATTGGACCTAATGGTAGGTAGAAAAG
CAATATTCAAAAGTTTTTCATAGGGTAAAATTCTTCGCTATTTTATTCGG
TCACAAAGTAAAATACTTGTAAAAACAAAACATTATAATCCAGATATATA
TTCGTAAAGTTGAAGTTTTTCGCCAATATTTTACGAGAATTTCTCTTTGA
CGGAAACTTAAAATTACTTCAAATTATAGAAAGATTCGAATTAGCGAAAT
TCAAATTCAGCTACAGTTGGCTCACTCTAATACGATTTTCAGGGGGCCAA
GAATTTTCTTCGAATTAGAGAAAGATTCGAATTATAAAAAGTATGTTATA
CCAATTCCTAGCTGAAAGGATCAATGTTAAGTTCGAATTACAGAAAGATT
CGAATGATGAGAGGTTCGGATTAGAGCTGAATTGATTTTGATTTGCACAA
TCGGTTTTGTATTACATTTTAATACCCAGTCCATATTAACTTACACTGTT
CGTGATAAGAATCAATTCGAACCCTAAAACTAAAAATAATAATCATATTG
TTCAATGATCTCGTTTAGTATTAAATTCTGGACCCAGCTCAATCACAGCG
CTGCCTCGATCCTCTACAGAACTTCTTATTGAGTGGAGTTTGATGTCAAA
TCCTGGTATCATTGCTTATGTGGTATTGTATCGTGAAAAATTATTGACAA
GCCAAAAATATAAATCCATTGGCACTGACCAGAATAATGCTGTTTTAAGA
AACTTGAGGCCAGGTGAGTGAAAGACATTGATTTCAAAGCCCCGAAGTGG
CTAGATCCGAAACACCTGGATGGGAAATGAAGCCACTGATTTGGCATCCA
AAACACGTGACCCGTGTGATTTTTAAAACTTAAGACTTCATTTTTTCTTG
CTTGAGTAAAAGTTCAAGATTCCTCTCTACCTGCTTCGGGGCTTCAAATT
CAATGGTGAAAGATCTTTTTTAAACCATGTGGCCGGGTACCTTAGTCAGT
AGAGCATTCGCCTTACAATCAAAAAGCTTATCACAGCTTGGATAAACTGA
TCTAGGCAGTAGGTTGCTGGAGAGCTGAGAATAGGAGTCGCGCTCCACCT
CAGCATTCGAATTCCTTGGTCTAGCGCAACTAGAAAAGTGGATAGACTTC
CAGCGCCGCCTACAGCCACACAAGGCCTTCCAAAGAAAGTGAAAATTTCC
CTTGGAGCAAGATTGCGGACCAAGCCCTAGCATTTTCCGAAATGATACAC
TCAAAGACCGTTTATAAAGATTAAAAAATCTTTGTTAGACCTTCTGAGTT
TATCTCACAGCTTGTTTATGATGTCTTTAAATTTTCTATTTTCTATTCGT
TGTCTCTTCTAGCTTTTTTTAGTTAGTAAGTTCAAATTCGATATCACAAG
GGATGTGGATATTTGAATAATCCCCAGATTTAAACATGTTGATTGACAAT
CCTACCTTACAGAAGGAAATTCTAATCTCATCTTTTGACCACTATTCAGG
AACTGGATATAGTGTACGTGTAATGGCGTACACAAGTGATGGGAATGGAG
CAGCTTCAGATCTAGTGCATGGTACTACATTCGAAACAAGTAAGTGTACA
TTCAAGTATAAATATTCGGACGCTTATAAACGTGTCCGAGAATAATCGTT
TGATACTAGCACTAGAAAATCCGGTATGCACTTTTTTCCACCTTTTTTCA
GGACAAAATCAAGCTTTTTTTCTATTGTATCAAATTGGCTTCTAATAAAA
CCCGTAATGCCAACGATTTACAGATCTACGATCTACCGAGGATGAAAAAC
TTAACTCAAAACTTGTTTAAATGTCCTTTGATTTTTAGTTCCAAGCGCTC
CACCGACTAACATGCAGATTATCGATAGAACCGCGTTCTCTCTTGATCTT
CAATGGGACGGTGTACCTACACAATACATGAACGGAGTACCTTTAGGATA
CAAAATCAGCAGCTATTCGCATGGAGTTTTGACTAGCACAACAACTGTTG
ATTTCATAACTAC

Coding sequence (CDS) from alignment at scaffold_477:410570..412682-

>TCONS_00067911 ID=TCONS_00067911|Name=TCONS_00067911|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_477:410570..412682- (Clytia hemisphaerica)
GCGAATTTTACCATCCATTATTCGGGGTTCGATTCGTATCAATTCGTCTT
ACTTCAAGATAGTATAGATGTGGATAATTCGATCGGGAAATTAGATCTTC
TACCGTCTAACGTGCAATATAAAATTGGACCTAATGTATTAAATTCTGGA
CCCAGCTCAATCACAGCGCTGCCTCGATCCTCTACAGAACTTCTTATTGA
GTGGAGTTTGATGTCAAATCCTGGTATCATTGCTTATGTGGTATTGTATC
GTGAAAAATTATTGACAAGCCAAAAATATAAATCCATTGGCACTGACCAG
AATAATGCTGTTTTAAGAAACTTGAGGCCAGGAACTGGATATAGTGTACG
TGTAATGGCGTACACAAGTGATGGGAATGGAGCAGCTTCAGATCTAGTGC
ATGGTACTACATTCGAAACAATTCCAAGCGCTCCACCGACTAACATGCAG
ATTATCGATAGAACCGCGTTCTCTCTTGATCTTCAATGGGACGGTGTACC
TACACAATACATGAACGGAGTACCTTTAGGATACAAAATCAGCAGCTATT
CGCATGGAGTTTTGACTAGCACAACAACTGTTGATTTCATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042412XLOC_042412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067911-exon-scaffold_477-1575043694:412546..412682TCONS_00067911-exon-scaffold_477-1575043694:412546..412682Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1575043694:411820..412014TCONS_00067911-exon-scaffold_477-1575043694:411820..412014Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1575043694:410994..411083TCONS_00067911-exon-scaffold_477-1575043694:410994..411083Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1575043694:410570..410744TCONS_00067911-exon-scaffold_477-1575043694:410570..410744Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1510915933:412546..412682TCONS_00067911-exon-scaffold_477-1510915933:412546..412682Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1510915933:411820..412014TCONS_00067911-exon-scaffold_477-1510915933:411820..412014Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1510915933:410994..411083TCONS_00067911-exon-scaffold_477-1510915933:410994..411083Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1510915933:410570..410744TCONS_00067911-exon-scaffold_477-1510915933:410570..410744Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1491911889:412546..412682TCONS_00067911-exon-scaffold_477-1491911889:412546..412682Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1491911889:411820..412014TCONS_00067911-exon-scaffold_477-1491911889:411820..412014Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1491911889:410994..411083TCONS_00067911-exon-scaffold_477-1491911889:410994..411083Clytia hemisphaericaexon
TCONS_00067911-exon-scaffold_477-1491911889:410570..410744TCONS_00067911-exon-scaffold_477-1491911889:410570..410744Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067911-proteinTCONS_00067911-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:410570..412682 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.110056	0.385263	0.0954421	0	0.182691	2.91899	1.89462	0	0	0.205925	0	2.8188	5.39078	0.0884069	0.258731	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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