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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067920 ID=TCONS_00067920|Name=TCONS_00067920|organism=Clytia hemisphaerica|type=transcript|length=2303bp
ATCAATATCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTC
AGACATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCGACATCA
AGTCATACATCAATATCTTCGACATCATCAAGTCAGACATCAATTCAGGC
ATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCTGAGATCAAGTC
AGTTATCAATATCTTCGACATCAAGTCAGACATCAATTCAGGCATCAGTA
TCTTCGACATCAAGTCTGATGTCAATATCTCCGACATCAATTCAAGCATC
AATATCTTCAACATCAAGTCAGACATCAATATCTCCGACACCAAGTCAGA
CATTGACATCTTTAACGTCAAATCATATGTCAACATCTCCTTTATCAATA
CAGACATCAAGTCAGATATTGACATCTTCGACGTCAAGTCAGGCATCAAT
ATCTCCGACATCAATACAGCTATCAACATCTCCGACACTAAGTCAGACGT
CAATATCTTCGACATCAAGTCAGATATTGACATCTTCGACGTCAAGTCAG
GCATCAATATCTCCGACATCAATACAGCTATCAACATCTCCGACACTAAG
TCAGACGTCAATATCTTCGACATTAAGTCAGACATCAATATTATTTTCTG
ATTCTGTATTATCGACGACAATAACTGAAGTAGAAACTTTAAACAGAGAA
TCTTCTCAAGTATTTGCAACTGCTCCAAAATCACAGAAGATGGAACCAGA
GATACAAGGATCGGGCTCTTCATTTAGTAACACCGACTCAATATCAACAT
TCAGTTGGCCACAAGTTACACTGTCATCAATGATATCTTCAGAGAATTTT
ACTCTAGAAATGGTTACCACAACAGATGCAGATCCAACAGATCTCTTATC
CACGACTGGAGTACAAGAAACAAAAGCAATGTCGAGTCCAGTACCCAATA
TCAATGATTCATCACTACCAATGACAACAGTGAATTTAATACCATCGAGT
TTACCAGAAACACTAGTAAACCAACCTCAATCAATACTGTCCACCCAGTC
CTTATCACCAACACCCATTCTACAGGAGCATACGCCCTCTTTTCAATCGT
CCATCCGATTCAATAGCGCCGTACCCAATAACTATTCCCAACTCCAAACA
AACCAGACTATATATACACATTCAAGCATATCAGGgacttcttttcttct
ttcactTTTCACATCCGTCAACCCAAACCAATTCACATGTTTGTGCCAAC
CTTCAGTTTCAAGCTCACCATCGCAAACTATATTCTCTGGTATTAACAAT
CAAAATTCCTCTACACTTGAGAACAACTCAACCTCTCCTCAATTAACAGG
CCCTGTCATTTCCTCATTGAACTCCATTCCTATCACCTCCAACTCCATTC
CTATCACCTCCAACTCCACTCCTATCACCTCCAACTCCACTCCTATCACT
TCCAACTCCATTCCTATCACCTCCAACCACCTGCAAACATCTGAGTCATC
TTcacATGTTACAGAAAATAACCAACACACAGCCATCTTTTCCTCTCATT
CTTTCTTAACTTCTTTTGAATCAAAGAAGTATTCATGCTGGTGTTCTTCT
CCTGCACCCATCGCAACACAAACTGTTCAATATTCACAATCTTTTCAAAC
CACGACTCACACCCCAACGGCTGACCAAACCAATATACATACCCTTTCAA
CCTCTCAAACCACTAACCGCCCACCAGTCGCCCACCAGACCACTATCTAT
ACTTCAACTCAAACCCCAGAAACACCCCAGACCACTACTCACAACCAACC
AGCTGCCCAATCCATTAGTCCTTCCTCTTCTATTTCCTCTTCAAGCAACA
ATCATCAAAATCAAGCAACAACTACACTTTCATATCTAGCAACTACCAAC
CTCGTCACAAATCAACCATCGAACCCATCTCTTTCACCAGACTCCAACTC
TATTGTTCCTACACGACCTTCTTCATCCACCCAACTTCCATTTACTACCA
GTGTACGCTCCCCATCGCTGCCCTACCAACCCTCCATCACTCCATCCTTC
TCTTCATCTTCAAGTGAAGCACTACAGAGTACACCCGCCCTTCCACAGAC
CCTTTCCACCAATCAGCTCTCTACCTCCATCATGTACCCTCTTATTACTT
CCACACCACAATTTATCTCAATAATGACTCTCTCCTCTCTTTCCCTTTCT
TCAGCACTGATTAAAGCGACAACTTCTTCACTCCCAAACTCTTTTCTTAC
TTTTCTCCTAATGCTCCCTTCCACTACATCTGCAGCTTTTCTTCAAGATG
GTG Run BLAST on NCBI protein sequence of TCONS_00067920-protein >TCONS_00067920-protein ID=TCONS_00067920-protein|Name=TCONS_00067920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=767bp
SISPTSSQTSISSTSSQTSISSTSSQMSISPTSSHTSISSTSSSQTSIQA
SISSTSSQMSISLRSSQLSISSTSSQTSIQASVSSTSSLMSISPTSIQAS
ISSTSSQTSISPTPSQTLTSLTSNHMSTSPLSIQTSSQILTSSTSSQASI
SPTSIQLSTSPTLSQTSISSTSSQILTSSTSSQASISPTSIQLSTSPTLS
QTSISSTLSQTSILFSDSVLSTTITEVETLNRESSQVFATAPKSQKMEPE
IQGSGSSFSNTDSISTFSWPQVTLSSMISSENFTLEMVTTTDADPTDLLS
TTGVQETKAMSSPVPNINDSSLPMTTVNLIPSSLPETLVNQPQSILSTQS
LSPTPILQEHTPSFQSSIRFNSAVPNNYSQLQTNQTIYTHSSISGTSFLL
SLFTSVNPNQFTCLCQPSVSSSPSQTIFSGINNQNSSTLENNSTSPQLTG
PVISSLNSIPITSNSIPITSNSTPITSNSTPITSNSIPITSNHLQTSESS
SHVTENNQHTAIFSSHSFLTSFESKKYSCWCSSPAPIATQTVQYSQSFQT
TTHTPTADQTNIHTLSTSQTTNRPPVAHQTTIYTSTQTPETPQTTTHNQP
AAQSISPSSSISSSSNNHQNQATTTLSYLATTNLVTNQPSNPSLSPDSNS
IVPTRPSSSTQLPFTTSVRSPSLPYQPSITPSFSSSSSEALQSTPALPQT
LSTNQLSTSIMYPLITSTPQFISIMTLSSLSLSSALIKATTSSLPNSFLT
FLLMLPSTTSAAFLQDG Run BLAST on NCBI transcript from alignment at scaffold_477:421284..423973- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067920 ID=TCONS_00067920|Name=TCONS_00067920|organism=Clytia hemisphaerica|type=transcript|length=2690bp|location=Sequence derived from alignment at scaffold_477:421284..423973- (Clytia hemisphaerica)
ATCAATATCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTC
AGACATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCGACATCA
AGTCAGATGTCGGTGTCTCCGAGATCAAGTCAGTTATCAATATCTTCGAC
ATTAAGTCAGATGTCAATATCTCCGACATCAAGTCAGATGTCGATATCAC
AGATATCAAGTCAGACATCAATATCTCCAACATCAAGTCATACATCAATA
TCTTCGACATCATCAAGTCAGACATCAATTCAGGCATCAATATCTTCGAC
ATCAAGTCAGATGTCAATATCTCTGAGATCAAGTCAGTTATCAATATCTT
CGACATCAAGTCAGACATCAATTCAGGCATCAGTATCTTCGACATCAAGT
CTGATGTCAATATCTCCGACATCAATTCAAGCATCAATATCTTCAACATC
AAGTCAGACATCAATATCTCCGACACCAAGTCAGACATTGACATCTTTAA
CGTCAAATCATATGTCAACATCTCCTTTATCAATACAGACATCAAGTCAG
ATATTGACATCTTCGACGTCAAGTCAGGCATCAATATCTCCGACATCAAT
ACAGCTATCAACATCTCCGACACTAAGTCAGACGTCAATATCTTCGACAT
CAAGTCAGATATTGACATCTTCGACGTCAAGTCAGGCATCAATATCTCCG
ACATCAATACAGCTATCAACATCTCCGACACTAAGTCAGACGTCAATATC
TTCGACATTAAGTCAGACATCAATATTATTTTCTGATTCTGTATTATCGA
CGACAATAACTGAAGTAGAAACTTTAAACAGAGAATCTTCTCAAGTATTT
GCAACTGCTCCAAAATCACAGAAGATGGAACCAGAGATACAAGGATCGGG
CTCTTCATTTAGTAACACCGACTCAATATCAACATTCAGTTGGCCACAAG
TTACACTGTCATCAATGATATCTTCAGAGAATTTTACTCTAGAAATGGTT
ACCACAACAGATGCAGATCCAACAGATCTCTTATCCACGACTGGAGTACA
AGAAACAAAAGCAATGTCGAGTCCAGTACCCAATATCAATGATTCATCAC
TACCAATGACAACAGTGAATTTAATACCATCGAGTTTACCAGAAACACTA
GTAAACCAACCTCAATCAATACTGTCCACCCAGTCCTTATCACCAACACC
CATTCTACAGGAGCATACGCCCTCTTTTCAATCGTCCATCCGATTCAATA
GCGCCGTACCCAATAACTATTCCCAACTCCAAACAAACCAGACTATATAT
ACACATTCAAGCATATCAGGGACTTCTTTTCTTCTTTCACTTTTCACATC
CGTCAACCCAAACCAATTCACATGTTTGTGCCAACCTTCAGTTTCAAGCT
CACCATCGCAAACTATATTCTCTGGTATTAACAATCAAAATTCCTCTACA
CTTGAGAACAACTCAACCTCTCCTCAATTAACAGGCCCTGTCATTTCCTC
ATTGAACTCCATTCCTATCACCTCCAACTCCATTCCTATCACCTCCAACT
CCACTCCTATCACCTCCAACTCCACTCCTATCACTTCCAACTCCATTCCT
ATCACCTCCAACCACCTGCAAACATCTGAGTCATCTTCACATTTTAAAGA
AAATAACCAAAACACAAGCATCTTTTCTTCTCATTCTTTCTTAACTTCTT
CCGAATCAAGGAAGTATTCATCGCAAACTATATCCTCTGGTACTAACAAT
CAAAACTCTTCTACTCTCGAGAACAACTCAACCTCTCCTCAATTAACAAG
CCCTGCTATTTCCTCCATGAACTCCATTCCTATCACTTCCAACTCCATTC
CTATCACCTCCGACCACCTGCAAACATCTGAGTCATTCTCACATGTTACA
GAAAATAACCAACACACAGCCATCTTTTCCTCTCATTCTTTCTTAACTTC
TTTTGAATCAAAGAAGTATTCATGCTGGTGTTCTTCTCCTGCACCCATCG
CAACACAAACTGTTCAATATTCACAATCTTTTCAAACCACGACTCACACC
CCAACGGCTGACCAAACCAATATACATACCCTTTCAACCTCTCAAACCAC
TAACCGCCCACCAGTCGCCCACCAGACCACTATCTATACTTCAACTCAAA
CCCCAGAAACACCCCAGACCACTACTCACAACCAACCAGCTGCCCAATCC
ATTAGTCCTTCCTCTTCTATTTCCTCTTCAAGCAACAATCATCAAAATCA
AGCAACAACTACACTTTCATATCTAGCAACTACCAACCTCGTCACAAATC
AACCATCGAACCCATCTCTTTCACCAGACTCCAACTCTATTGTTCCTACA
CGACCTTCTTCATCCACCCAACTTCCATTTACTACCAGTGTACGCTCCCC
ATCGCTGCCCTACCAACCCTCCATCACTCCATCCTTCTCTTCATCTTCAA
GTGAAGCACTACAGAGTACACCCGCCCTTCCACAGACCCTTTCCACCAAT
CAGCTCTCTACCTCCATCATGTACCCTCTTATTACTTCCACACCACAATT
TATCTCAATAATGACTCTCTCCTCTCTTTCCCTTTCTTCAGCACTGATTA
AAGCGACAACTTCTTCACTCCCAAACTCTTTTCTTACTTTTCTCCTAATG
CTCCCTTCCACTACATCTGCAGCTTTTCTTCAAGATGGTG Coding sequence (CDS) from alignment at scaffold_477:421284..423973- >TCONS_00067920 ID=TCONS_00067920|Name=TCONS_00067920|organism=Clytia hemisphaerica|type=CDS|length=2301bp|location=Sequence derived from alignment at scaffold_477:421284..423973- (Clytia hemisphaerica)
TCAATATCTCCAACTTCAAGTCAGACATCAATATCTTCGACATCAAGTCA
GACATCAATATCTTCGACATCAAGTCAGATGTCAATATCTCCGACATCAA
GTCATACATCAATATCTTCGACATCATCAAGTCAGACATCAATTCAGGCA
TCAATATCTTCGACATCAAGTCAGATGTCAATATCTCTGAGATCAAGTCA
GTTATCAATATCTTCGACATCAAGTCAGACATCAATTCAGGCATCAGTAT
CTTCGACATCAAGTCTGATGTCAATATCTCCGACATCAATTCAAGCATCA
ATATCTTCAACATCAAGTCAGACATCAATATCTCCGACACCAAGTCAGAC
ATTGACATCTTTAACGTCAAATCATATGTCAACATCTCCTTTATCAATAC
AGACATCAAGTCAGATATTGACATCTTCGACGTCAAGTCAGGCATCAATA
TCTCCGACATCAATACAGCTATCAACATCTCCGACACTAAGTCAGACGTC
AATATCTTCGACATCAAGTCAGATATTGACATCTTCGACGTCAAGTCAGG
CATCAATATCTCCGACATCAATACAGCTATCAACATCTCCGACACTAAGT
CAGACGTCAATATCTTCGACATTAAGTCAGACATCAATATTATTTTCTGA
TTCTGTATTATCGACGACAATAACTGAAGTAGAAACTTTAAACAGAGAAT
CTTCTCAAGTATTTGCAACTGCTCCAAAATCACAGAAGATGGAACCAGAG
ATACAAGGATCGGGCTCTTCATTTAGTAACACCGACTCAATATCAACATT
CAGTTGGCCACAAGTTACACTGTCATCAATGATATCTTCAGAGAATTTTA
CTCTAGAAATGGTTACCACAACAGATGCAGATCCAACAGATCTCTTATCC
ACGACTGGAGTACAAGAAACAAAAGCAATGTCGAGTCCAGTACCCAATAT
CAATGATTCATCACTACCAATGACAACAGTGAATTTAATACCATCGAGTT
TACCAGAAACACTAGTAAACCAACCTCAATCAATACTGTCCACCCAGTCC
TTATCACCAACACCCATTCTACAGGAGCATACGCCCTCTTTTCAATCGTC
CATCCGATTCAATAGCGCCGTACCCAATAACTATTCCCAACTCCAAACAA
ACCAGACTATATATACACATTCAAGCATATCAGGGACTTCTTTTCTTCTT
TCACTTTTCACATCCGTCAACCCAAACCAATTCACATGTTTGTGCCAACC
TTCAGTTTCAAGCTCACCATCGCAAACTATATTCTCTGGTATTAACAATC
AAAATTCCTCTACACTTGAGAACAACTCAACCTCTCCTCAATTAACAGGC
CCTGTCATTTCCTCATTGAACTCCATTCCTATCACCTCCAACTCCATTCC
TATCACCTCCAACTCCACTCCTATCACCTCCAACTCCACTCCTATCACTT
CCAACTCCATTCCTATCACCTCCAACCACCTGCAAACATCTGAGTCATCT
TCACATGTTACAGAAAATAACCAACACACAGCCATCTTTTCCTCTCATTC
TTTCTTAACTTCTTTTGAATCAAAGAAGTATTCATGCTGGTGTTCTTCTC
CTGCACCCATCGCAACACAAACTGTTCAATATTCACAATCTTTTCAAACC
ACGACTCACACCCCAACGGCTGACCAAACCAATATACATACCCTTTCAAC
CTCTCAAACCACTAACCGCCCACCAGTCGCCCACCAGACCACTATCTATA
CTTCAACTCAAACCCCAGAAACACCCCAGACCACTACTCACAACCAACCA
GCTGCCCAATCCATTAGTCCTTCCTCTTCTATTTCCTCTTCAAGCAACAA
TCATCAAAATCAAGCAACAACTACACTTTCATATCTAGCAACTACCAACC
TCGTCACAAATCAACCATCGAACCCATCTCTTTCACCAGACTCCAACTCT
ATTGTTCCTACACGACCTTCTTCATCCACCCAACTTCCATTTACTACCAG
TGTACGCTCCCCATCGCTGCCCTACCAACCCTCCATCACTCCATCCTTCT
CTTCATCTTCAAGTGAAGCACTACAGAGTACACCCGCCCTTCCACAGACC
CTTTCCACCAATCAGCTCTCTACCTCCATCATGTACCCTCTTATTACTTC
CACACCACAATTTATCTCAATAATGACTCTCTCCTCTCTTTCCCTTTCTT
CAGCACTGATTAAAGCGACAACTTCTTCACTCCCAAACTCTTTTCTTACT
TTTCTCCTAATGCTCCCTTCCACTACATCTGCAGCTTTTCTTCAAGATGG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067920-exon-scaffold_477-1575043694:423878..423973 | TCONS_00067920-exon-scaffold_477-1575043694:423878..423973 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1575043694:422334..423742 | TCONS_00067920-exon-scaffold_477-1575043694:422334..423742 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1575043694:421284..422081 | TCONS_00067920-exon-scaffold_477-1575043694:421284..422081 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1510915933:423878..423973 | TCONS_00067920-exon-scaffold_477-1510915933:423878..423973 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1510915933:422334..423742 | TCONS_00067920-exon-scaffold_477-1510915933:422334..423742 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1510915933:421284..422081 | TCONS_00067920-exon-scaffold_477-1510915933:421284..422081 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1491911889:423878..423973 | TCONS_00067920-exon-scaffold_477-1491911889:423878..423973 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1491911889:422334..423742 | TCONS_00067920-exon-scaffold_477-1491911889:422334..423742 | Clytia hemisphaerica | exon |
| TCONS_00067920-exon-scaffold_477-1491911889:421284..422081 | TCONS_00067920-exon-scaffold_477-1491911889:421284..422081 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:421284..423973 - |
Blast
The following BLAST results are available for this feature:
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