|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067936 ID=TCONS_00067936|Name=TCONS_00067936|organism=Clytia hemisphaerica|type=transcript|length=1349bpRun BLAST on NCBI protein sequence of TCONS_00067936-protein >TCONS_00067936-protein ID=TCONS_00067936-protein|Name=TCONS_00067936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MFNSEDHPHLRLNLLTNEWVIVSPHRMKRPWAGQIEATEGENISRHDLKNRun BLAST on NCBI transcript from alignment at scaffold_477:502679..516466- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067936 ID=TCONS_00067936|Name=TCONS_00067936|organism=Clytia hemisphaerica|type=transcript|length=13788bp|location=Sequence derived from alignment at scaffold_477:502679..516466- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_477:502679..516466- >TCONS_00067936 ID=TCONS_00067936|Name=TCONS_00067936|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_477:502679..516466- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067936 vs. Swiss-Prot (Human)
Match: GALT (Galactose-1-phosphate uridylyltransferase OS=Homo sapiens GN=GALT PE=1 SV=3) HSP 1 Score: 404.445 bits (1038), Expect = 1.125e-137 Identity = 185/345 (53.62%), Postives = 253/345 (73.33%), Query Frame = 2
Query: 47 FNSEDHPHLRLNLLTNEWVIVSPHRMKRPWAGQIEATEGENISRHDLKNPLCPGATRSSGMMNDDYKSTFVFENDFPALLKETPDPAEMENDSDLLQSKRAEGTCRVMCFHPYSDLSLPLMSTVEIQAVITEWINQYTELSKTYQWVQIFENKGKMMGCSNPHPHCQIWGCNFLPNEAIKQQENQLKYYNEKQSSLLLDYIKLEQQKKERIVVENDDWIVVIPYWAMWPFEILVMPKKATQRINDXXXXXXXXXXXIMKSYLTKYDNLFKTSFPYSMGWHSAPGLEDSP----HWQLHAHYYPPLLRSATVKKHMVGFEMLSGAMRDITPEKAATTLRDLSDIHY 1069
F + DH H+R N L +EWV+VS HRMKRPW GQ+E + + RHD NPLCPGA R++G +N Y STF+F+NDFPAL + P P +D L Q+K A G C+VMCFHP+SD++LPLMS EI+AV+ W + EL Y WVQIFENKG MMGCSNPHPHCQ+W +FLP+ A +++ +Q Y ++ LL++Y + E +KER+V+ ++ W+V++P+WA WP++ L++P++ +R+ +L+ +++ L++IMK LTKYDNLF+TSFPYSMGWH AP ++ HWQLHAHYYPPLLRSATV+K MVG+EML+ A RD+TPE+AA LR L ++HY
Sbjct: 24 FRANDHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPQLLKTVPRHDPLNPLCPGAIRANGEVNPQYDSTFLFDNDFPALQPDAPSPGP--SDHPLFQAKSARGVCKVMCFHPWSDVTLPLMSVPEIRAVVDAWASVTEELGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQQAYKSQHGEPLLMEYSRQELLRKERLVLTSEHWLVLVPFWATWPYQTLLLPRRHVRRLPELTPAERDDLASIMKKLLTKYDNLFETSFPYSMGWHGAPTGSEAGANWNHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDLTPEQAAERLRALPEVHY 366 The following BLAST results are available for this feature:
BLAST of TCONS_00067936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.