TCONS_00067949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067949
Unique NameTCONS_00067949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067949 ID=TCONS_00067949|Name=TCONS_00067949|organism=Clytia hemisphaerica|type=transcript|length=905bp
GAAGTGATTCCAGTTGTTGGATCAGATATCTTTTTGAAGGTGACCACAGC
TGGCAGCAATAGTCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAG
CATTACTTGACAATCTCTTGTTTTGAACGTTCGATGGATCCATTCAATGA
TACTTTTGACTTTCTCGATCTGGTTTGTGATGTGTTTGCTGTATGTCATG
TTAACATCCAGAGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTTGAT
AGGAGAGCCAGTGTCTGAGAGGTAACTTAAGTGTTCTTttagttcttcat
tttttccgtatTTAAGATGTTCAAACTTCAAGCCATTGAGCTGCATGTTG
TTTAATGATGTCCATTGATACACCACATCAAGGTCGTTTTGTAGAAATTG
AACATATCAGTGTTATTAGAGATCTCCTTCATTAAACGTGTATCGTCGGC
AAGTGAAGATAGAAATGAATGTAGGATGTTGGTGTCAATATCTTGGATCA
TTATCAGGAAGAGAAGTGGACCAAGAACTGATCCTTGGGGGACGCCAGAA
ATGACTTCTGCTTTTTTGGAGAGGATGTAGTCAACAGATACTTGTTGAGT
CCTACCGGTAAGGAAGGATCTGATCCATTGCAGTAATTTGCCAGTTATAC
CATTTCTCTCGATTTTATGGAGTAAGATTGTATGATCTACACGGTCAAAT
GCCTTGCTGAAGTCAAGGTAAATAACGTCAACGTTACGTCCTTTTTCAAT
GTGATGGATGAGTTGTTCTGTGTGCGAAAGAAGTTGGCTAAGACATGATC
CTAGATTCCAGACCTGAATCCATGTTGATTATTGTTAAAGAGGTCGTTTT
CTTCTAGATGATTTTGTAGCCGTTTTCTGACAATCTTCTCGAAGATCTTA
GTTAC
Run BLAST on NCBI

protein sequence of TCONS_00067949-protein

>TCONS_00067949-protein ID=TCONS_00067949-protein|Name=TCONS_00067949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MQLNGLKFEHLKYGKNEELKEHLSYLSDTGSPIKTKMDVKDLGVTLDVNM
TYSKHITNQIEKVKSIIEWIHRTFKTRDCQVMLTLWKSLVLPHIDYCCQL
WSPSKRYLIQQLESL
Run BLAST on NCBI

transcript from alignment at scaffold_477:153837..154741

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067949 ID=TCONS_00067949|Name=TCONS_00067949|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at scaffold_477:153837..154741 (Clytia hemisphaerica)
GTAACTAAGATCTTCGAGAAGATTGTCAGAAAACGGCTACAAAATCATCT
AGAAGAAAACGACCTCTTTAACAATAATCAACATGGATTCAGGTCTGGAA
TCTAGGATCATGTCTTAGCCAACTTCTTTCGCACACAGAACAACTCATCC
ATCACATTGAAAAAGGACGTAACGTTGACGTTATTTACCTTGACTTCAGC
AAGGCATTTGACCGTGTAGATCATACAATCTTACTCCATAAAATCGAGAG
AAATGGTATAACTGGCAAATTACTGCAATGGATCAGATCCTTCCTTACCG
GTAGGACTCAACAAGTATCTGTTGACTACATCCTCTCCAAAAAAGCAGAA
GTCATTTCTGGCGTCCCCCAAGGATCAGTTCTTGGTCCACTTCTCTTCCT
GATAATGATCCAAGATATTGACACCAACATCCTACATTCATTTCTATCTT
CACTTGCCGACGATACACGTTTAATGAAGGAGATCTCTAATAACACTGAT
ATGTTCAATTTCTACAAAACGACCTTGATGTGGTGTATCAATGGACATCA
TTAAACAACATGCAGCTCAATGGCTTGAAGTTTGAACATCTTAAatacgg
aaaaaatgaagaactaaAAGAACACTTAAGTTACCTCTCAGACACTGGCT
CTCCTATCAAAACCAAGATGGACGTGAAGGATTTAGGAGTCACTCTGGAT
GTTAACATGACATACAGCAAACACATCACAAACCAGATCGAGAAAGTCAA
AAGTATCATTGAATGGATCCATCGAACGTTCAAAACAAGAGATTGTCAAG
TAATGCTAACTCTTTGGAAGTCACTGGTACTACCACACATTGACTATTGC
TGCCAGCTGTGGTCACCTTCAAAAAGATATCTGATCCAACAACTGGAATC
ACTTC

Coding sequence (CDS) from alignment at scaffold_477:153837..154741

>TCONS_00067949 ID=TCONS_00067949|Name=TCONS_00067949|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_477:153837..154741 (Clytia hemisphaerica)
ATGCAGCTCAATGGCTTGAAGTTTGAACATCTTAAatacggaaaaaatga
agaactaaAAGAACACTTAAGTTACCTCTCAGACACTGGCTCTCCTATCA
AAACCAAGATGGACGTGAAGGATTTAGGAGTCACTCTGGATGTTAACATG
ACATACAGCAAACACATCACAAACCAGATCGAGAAAGTCAAAAGTATCAT
TGAATGGATCCATCGAACGTTCAAAACAAGAGATTGTCAAGTAATGCTAA
CTCTTTGGAAGTCACTGGTACTACCACACATTGACTATTGCTGCCAGCTG
TGGTCACCTTCAAAAAGATATCTGATCCAACAACTGGAATCACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042432XLOC_042432Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067949-proteinTCONS_00067949-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067949-exon-scaffold_477-1491911889:153837..154741TCONS_00067949-exon-scaffold_477-1491911889:153837..154741Clytia hemisphaericaexon
TCONS_00067949-exon-scaffold_477-1510915933:153837..154741TCONS_00067949-exon-scaffold_477-1510915933:153837..154741Clytia hemisphaericaexon
TCONS_00067949-exon-scaffold_477-1575043694:153837..154741TCONS_00067949-exon-scaffold_477-1575043694:153837..154741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:153837..154741 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.4978	2.77156	4.97965	3.53177	2.85947	2.40488	3.22087	3.59211	2.54028	2.28592	2.23897	1.84343	2.59086	1.53047	0.754686	1.06994	1.29911	0.886235	1.71739	1.23715	1.90598	1.88882	0.968666	1.08056	2.75753	3.527	1.48515	1.82828	0.907987	0.898525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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