TCONS_00068118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068118
Unique NameTCONS_00068118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068118 ID=TCONS_00068118|Name=TCONS_00068118|organism=Clytia hemisphaerica|type=transcript|length=2789bp
NATACAGTGATGACGAGAGTGAAGATGGGCTTACATCAGACTATTACGAT
GGAATaccatttgaaaaaagaaacaagGCAAACTATGAAAGCCTTTTTAA
TATGAGGGACATTGAAAGAAACGCAGAAGACAATAAGCCAAAGACGGAAG
TGATGGTGAAGAGAGCCAAGGTGGATGATGGTGGTGAAAATGGTCCTTTT
TCATGTGGCTTTGAAACAGATTGcacgaaatattttcaattcgtCGGAAC
AAAACTACAGTGGAAGAAAAGCACTCGAATTCCTGATCGGAAAAGTTCAC
ATGGTGCATCCATGGAGGTGGACGTCAAGAAGACGAACACGAGAAAAGAT
CGTGCTTCCATGTCGTACAAATTCAACGTACGTCACGCGGCACAATGTAA
TGAGTTCTACTACAACATGTTCGACGAGGAAGGATGTGACGTCGTCAGAT
TGTTGGTCACCATGCAATGTGACGGAGAAAACAAGCCAACTGAATTGTTC
AGAAAAAGTTGGAATGAAAAGGGTGGTTGGAATCGTGTGTTGATGAATAT
CAAAAAAACACCAGGAACTATTTGCACTATCACATGGCGAGCATCTCAAA
GTTTGTCACCAGAAGGCAGGTTGAATTTGGATGACATCACAATGTACAAC
CGCGCATGTCCAAAACCAAATGAAGTGGAGATTCCAAGTGCAGCTAGTTG
TACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGGGCTCAAGTGGA
GTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTCCTGATCTCTAC
TATGGAAAGAAAGTCGGACCTAAATATGCTTTCCTTGAGGCAAGTGGAAG
CAACTTCCCATCCGTCAAAGGTGTATTGACAAGTCGCAAGTTGAAGGGAG
ACACTGACAACTGTTTCCGAATGATGGCTTACATGTATGGTGAGGATTTG
GGTACACTACAAGTGTCATTCAAAAGTCCAAATGTCACCGATAAAGTGGT
GTATGAGAGGAAAGGCGATCAAGGCAAAAGATGGTTCGAAGCTTTCGTAA
CCATTCCAGCTAATACTGAAACCCAGATCGAAATCAAAGGGGTGACAGGG
ACTGGACCTCGTTCTGATATTGCCATTGATGACATTCTGGTTGAACCTGG
AAATTGTGATGAGCAAGGAGAGCTTGTTGGGTGTTCATATGATGTTGCTG
GTTCAAACGATCTATGCCACTTCACTGGAAACCCAAACTGTGGAGAGGTT
GAAATCAATATCCCTAATCTTGGTGAGGCCAAGCAGAATCGTTTGGTACA
AATtataccctaccaagccaaagattttgaaatttcatttgatGTTCAAC
CTGGCGATAAATCTAGCGGTTACGCAAGTTTAGTACACTTGACAACTGGA
TCAGATTGTTGTGGAAGGGGTTCACGCCATCCAGCCATTTATTTCCATCC
CAACACACTGAGAGTGATGGTGTGTACGACCGAAGCTGTCGGAGGTCATA
GATGTATCATAATGCGAAGAGATATCCCCACTGGTCAAACAAGTCATGTT
CAATATACTTTCAAAGAAAACCCATCGACACCAGGCCGCGGAGTTTGTGA
GTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGTGTACACAGCTG
AGTTCCCCAATGTCAAGATATTCTCTGGAGACATACAAAAGCAACCAGTT
AACAACAAACACATTATCACTAATTTCTTCTACAAGAATACAGCAAAAGT
GGAATCATGCACGAAAACATGCACTGcaaacgtcatcaaaacaaaggtca
aCAAAAAGGAAGTCACTGTCGCTAAATACAACAAAACGCAATGTCCGGTA
TCTTTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAACGGACGTTT
GGCCTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAAGGGCAATG
CTGAATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAACAGATGG
GTGGCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTCAATGTATG
GATGCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAACAAGAAAT
ACAGGATTGGTGTGATTCACAAATTGACCGATCAATGTCCAGAGATTTCT
TTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTACCTGAAACTCA
TCAAGAACACTGATCAATGGAACACGGTACATCACTGAAACTGATGTGAG
CAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAACTTAAATAGG
ATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGATAAAAGTAGTT
GTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaaaattatttca
aaaacattaacCTTCCCTtcgagatttttcaaaaaacaggCCCTGCGGAA
GCGGaaagactggggagacttcagccacTTTTgattaaattagatttttt
ttctcaaatttctagcgaatttaattttattatgagccttcagcctcccc
acttttacggtcgttccgccgggcctgaaaAAGATATTTagggaattaat
ttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTAAAAATCGGAA
CGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTatatcatagtat
aagaaagccgcggctggaatatgtaccgcattgtcttttcagttaattgc
tgttccatctctgtctccgagctttataagaacatcgag
Run BLAST on NCBI

transcript from alignment at scaffold_48:172616..182013+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068118 ID=TCONS_00068118|Name=TCONS_00068118|organism=Clytia hemisphaerica|type=transcript|length=9398bp|location=Sequence derived from alignment at scaffold_48:172616..182013+ (Clytia hemisphaerica)
NATACAGTGATGACGAGAGTGAAGGTAAAAACATCTACTTTCCTTTTTCT
ATTAAAAATTGGATCAAAAACTCTAAGTCAATGACCAAGAACAATTCCAA
AAATAAAGAAGCGATCGAGAAAACTACACCCTACAAAGACTGAATATACT
GTAGATCGGAGCTCCGTTGAATGTTTTCCTGGTCGCTTAAGAGAATTTTT
CGGCTTCCTTCCTTTTCGTAACTCAACTCTCACCGTCCCTTCGAAGTTTC
AGTTATGGATATTCGACCGCCATTTCAAATATCACCTTGAAAAAAGTGTG
AGGTCAAAAGTTTATGTATTCAGGAGTAAGCCACTTTGGCTGCAAGTTTT
TAGCTCAACCTAACGATGATAAGTTCTTATTGATTTCTTTTTACAAGTAG
ATGGGCTTACATCAGACTATTACGATGGAATaccatttgaaaaaagaaac
aagGCAAACTATGAAAGCCGTAAGTAATTTACGCAGTGCTAAGGGTTTGC
GATTGTAACGTCCCAGTTTCTTCATATGGTTTGAAGTTTCAAGCATCGGG
TGTTTTGATTAAGGTTGAAGGGCGTCTGCTTACCGAATTTTGCAACGCTA
TGCATTTAAAATCGTTGCTTTTAAAAAGCATTCTATAATCAAACTCGGAC
ATTTTACCGAGAGTGTCAAGCATCTTCCAATGAAAGATTTCTTTGTAAAT
GAATCATCTTTTCCATTTCATTCAGTTTTTAATATGAGGGACATTGAAAG
AAACGCAGGTGAGTCAAAATTCTTCCGTATAATTATTTCctttatttcct
ttttcaacaaccctcgaattttcaaatgaaacaatTTACCGCTACTTATC
TGAGGCCGAAAATATTACATGAAAGTGCATTAAATTTtgtattgaaaaca
aatttatcaaacaaTTTCTGCAAGGTCTTTCGTAGTTTATTATATCATCA
TTCCTAAAACATACCGGGAACATACCATTAAAAACATCAATTCTAAAAGA
ACCTTTGTCCTCAAATTAAACAAGAGCAGGATAAAGAGGCTAAAGATGCC
AAAAAAAAGAGAGcttaaagaaaacttttttgattaagCAATAGAAGACA
ATAAGCCAAAGACGGAAGTGATGGTGAAGAGAGCCAAGGTGGATGATGGT
GGTGAAAATGGTCCTTTTTGTAAGTTGACTTCTTGTTCATTTTATGTATC
GGTATCAAGGTATGTTTGTTAGGTGAGCAAAGATATATGACTTCATCTAT
ATCAGAACACACTACGAAGCCTGAATACTGTCCATAGATATCTAACACTA
GGCGCAGCTACTCTGTTCCTAGATGAAGAAAAACAATATGCAATCTTAGC
CGAGTTGAcgtaaatcaatcaatcaatcaatcaatcacatTACAATATAT
TCCTGCCGTTTCAGTTTCTAATTGCCTGTACCATACTGTGGTCTACTCAG
CAAaatggcgcattattttgcttcaactgGGGTCAACTGGCATCTCTTGA
GAATGACAGAGTAGCTTTATCTTTTGTTTAGTATAAGATAACTGTGGTAC
TGTACTGCACTGACAGAAAGGCCAAAAAGGACATTTATTTTGGGATTTCT
TGATgataaatttttctttcataatCTACCTATGACAGTATCCTCATAAG
TAAGACTACAGTCCCACTCCACCCTCTTTATATTCACGAGCCTTTAGATG
GATATTTCTTTTCCAAATACTCTTGCAGCATGTGGCTTTGAAACAGATTG
cacgaaatattttcaattcgtCGGAACAAAACTACAGTGGAAGAAAAGCA
CTCGAATTCCTGATCGGAAAAGTTCACATGGTGCATCCATGGAGGTGGAC
GTCAAGAAGGTACGCATTGTGAAATACCCAGCCACGTCCCCTGTGTACTA
TCGGCTTTTTATGCTTGCTGGTAGCgccatcagtaacgtaaataaagcct
gggatataCAGGCACGAGGTTCTGTAATACCATATAGGTATCGCGGGGTT
GGGGATTTTAAGTACGGGTAAACGACAATTATTCGTGgacgttaattttt
atttttgggcgTTGATTTTTATTTGTGGGCGTTAGTTTGAACACCAGTAA
AACAGTggaataaaatagaaaaaaaaatagaagagCTTTTAACTTGCTTT
GCCGGGTGTTTGAATGACTGTTTATAATTAAATTATTCGCTGTTCAGCGG
AATTTACCAAACTAGAACTCTTTTCAGTCCTCGAGAATAACTAAAGATAG
TTCAGCCTGAAAGTCTATACACTTGACAAACCCGTCAAATATAAATATCT
TATTTCGGAGTGGCCAGAAAATCATATTTTTACACATTCAAAATCTGTTG
AATACCTTGTGGAATGTACAATAAAGAATCTTGCAATAATACACATATAA
TACACACTTTACTTTTTCAGACGAACACGAGAAAAGATCGTGCTTCCATG
TCGTACAAATTCAACGTACGTCACGCGGCACAATGTAATGAGTTCTACTA
CAACATGTTCGACGAGGAAGGATGTGACGTCGTCAGATTGTTGGTCACCA
TGCAATGTGACGGAGAAAACAAGCCAACTGAATTGTTCAGAAAAAGTTGG
AATGAAAAGGGTGGTTGGAATCGTGTGTTGATGAATATCAAAAAAACACC
AGGAACTATTTGCACTGTGAGTTGAGTGTTTATACTAAGAAAGAGTGCTA
GCATCTATACAGCGTGGAGTGCAccatttaaaatctttttggTCTGAAGC
CTATATTACTATAGCCCCATCGCGGGTACCATCGACTTCGCTAATTCGAG
CAAATGGGGAATCTAATCACTTTCGACTTACAAGATATATCCCAAATATA
GAAATTTATTATCATATTGGTTATTAATAAGACTGTGTtcgagttttcaa
aaatatccaGGTGGTGCTTAAACAAATCAAAGGAATAGTAATTTCGTTAG
CAGCAAAACGTATTGTAACCACACCAAACCAACTTCGTTTAGATCACATG
GCGAGCATCTCAAAGTTTGTCACCAGAAGGCAGGTTGAATTTGGATGACA
TCACAATGTACAACCGCGCATGTCCAAAACCAAATGAAGTGGAGATTCCA
AGTAGGTTAATGTACAACAATACCAATACAATCTCATCTCCACTGTAAAC
CTTCTGATTTATGATGGGGCGtataaaagtttatttgatGACATATAGTA
GATATAAAAAGACTAAAACACCCAAAATCTCTCAAGGATTATGAGTTTGT
AAAAGTTTATTGTCTTGGCTCCATTCTATAAGACTCGActttaatttgaa
atattacgcAGAAAAAATGCAAGgtcaaaagtgttttcggtACTTTGAGT
TCTAAACCCTTCCTGTACCGGTGTCGCTATGCCGACACGGGGTATGGGAA
AAAGgcgaattttgattttgaaatcgatttctttttttaaggttACACAA
GTATATTACAAGTACTTAATGAATTAACAGGATCgaatttcatgaaaata
actttattgaaattttgaccgtttttggACAATATTCTTATTAAGTCATT
AGGACAAGAAAGCACCAAATTTGTATATTGTACCAGATTGTATGTCTTTC
CAGGGGtgggggcactccaggtaagtgacctaccggacgtgcgaccctta
agggtaggtttttttggactttggaaagcgcaatgtaagggttgatttgt
gagcaagtgggaaaaagggcactgtaagggtgtaaaatttgagtaaatac
caaattttgaggtaaaatttgagaaatttcaaaaaattttcgaaaaattg
cactataaaggtcgattttcagccaaatttttcctgcactgtaagggtcc
gattttagagacttgatttttggccgaacgtacggtcgttttcaaaatcg
agtgcccccccggaTGTCTTCCAAAGGAACCCATCGTTTCATTCACAAAT
AGAACAGGATACACTAGACTTTTACGATGAAATACCACATGAAAAAGAAA
CAAggcaaaatttacattttttgatcAGATTACACAGTGCAAAGGAGGCA
TGATCATAATCCGccaaattcatttttattttatacccAAGACAGTTTGT
GAAATATAATATGGTTAAATACACTTGTAGCTTGTTTGATTGTTAGACTG
GTCCACATTTCGCCATTTGTTAATCAAACCTTTCTCAAAGAACCCCCTTA
TATTTTTAGCTTTGGTTGGAAAACGTCTTGGGTGACATCAGCATAGTTCG
GATTCGACAATATTGTAATGGAAGGATTTTGACCACCCTCCTTgtcattc
aatatcaaaaaagtccaaaaaaagatcattttgacATTAATACCTCTTCC
AACAACAGTGAAATCATCCTAAAAGGTATTCTTTCGATTCATTTCAGGTG
CAGCTAGTTGTACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGGG
CTCAAGTGGAGTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTCC
TGATCTCTACTATGGAAAGAAAGTCGGACGTAAGTTGGATAATATTGAAG
ACATGTACACATTTTttcatataagaacaaactaagaaCATAAGCCTTTG
ATTGCCAAAatattaggaacattttaaggctttgcagaccataaaatacc
tattttcttaggagaattgacaaaaatactcataaaatggtgaaaataag
aacatgttaagaacattttgaggctttaaaatcaaaaagttaagaacatc
caaaggttctaacaattttggatgttcttacaatAAAAACGTGTAACCTG
ATGAACCGATACCTATCAGTAACCCACTTGGATCTAAAACACATTGGGTT
TTGGACTCGATCACTGAAGTATACAAATCTTTAACACCACTGTTTTTATT
TCACACACTGTATCAATGTATCGCAAACATAAGAAATACTGGTAAAAACT
TTCCATACCAAACAAACTTATTTAAAATGTTTCTCACATTTTACTACAGC
TAAATATGCTTTCCTTGAGGCAAGTGGAAGCAACTTCCCATCCGTCAAAG
GTGTATTGACAAGTCGCAAGTTGAAGGGAGACACTGACAACTGTTTCCGA
ATGATGGCTTACATGTATGGTGAGGATTTGGGTACACTACAAGTGTCATT
CAAAAGTCCAAATGTCACCGATAAAGTGGTGTATGAGAGGAAAGGCGATC
AAGGCAAAAGATGGTTCGAAGCTTTCGTAACCATTCCAGCTAATACTGAA
ACCCAGGTATCATTACTATGAAACTCTATATTCTTAACAGAAAACAGTGT
TAAATTGGTTTGTTGGTTACAAAGAAAGTGGGTAAAAGAATTTTTCACCC
ATAGCTACAGACGATACTTTAATAGACATTCTCCTATTGCTTATAGATCG
AAATCAAAGGGGTGACAGGGACTGGACCTCGTTCTGATATTGCCATTGAT
GACATTCTGGTTGAACCTGGAAATTGTGATGAGCAAGGAGAGCTTGTTGG
GTGTTCATATGATGTTGCTGGTTCAAACGATCTATGCCACTTCACTGGAA
ACCCAAACTGTGGAGAGGTTGAAATCAATATCCCTAGTAAGCTCATAGAG
TcaatttaaagttttctttccAAACTTCTCAATGTGCAACTTTTTTGCAA
TACTACAGTTCCATCGAAAACCTGAGATATCTGGGTATGTAGATTTCTTG
GAAAGCGATGATCAAGTTTAATGAATATAACAACCATAGTGTCGTTGGAC
AGCTCTGCTACAAATCTACAAGAAGCAGCGGACTTCTTTTCCTTCTATCT
TTTATGGGGTTAATTACCAACAGTGCACAGTGCGACAACCATTGAGAACG
TAACTAAGGTTTGAAACATTATGTTCTTATCATCAATTCACAGATCTTGG
TGAGGCCAAGCAGAATCGTTTGGTACAAATtataccctaccaagccaaag
attttgaaatttcatttgatGTTCAACCTGGCGATAAATCTAGCGGTTAC
GCAAGTTTAGTACACTTGACAACTGGATCAGATTGTTGTGGAAGGGGTTT
GTATTCATTACAACGATAAACAATTTTCCCGATCGCAGGACATACCCATG
GTTATTAGTTTACCCCATCTTTCGTATCAGTTTTACAATTTATCTCTTAT
GTCCTGTACACGACTCTTTCAAAGCAGCCCCTCCTCATTCTGAAAATGCA
TGAAATATGAACAATCAACGACTAGTATAATTATGCGTTCTTTACTTGTA
GGTTCACGCCATCCAGCCATTTATTTCCATCCCAACACACTGAGAGTGAT
GGTGTGTACGACCGAAGCTGTCGGAGGTCATAGATGTATCATAATGCCAA
GAGATATCCCCACTGGTCAAACAAGTCATGTTCAATATACTTTCAAAGAA
AACGTAAGACCTTAAGGATATCTGTACTTAAGTGTTTTTGAAGTATAGAA
ATTAGATCTAATAATTATATAGGAAAGGGGTCAATATGAAATTGATAACA
CGAGGTTCGTAGATAATTCGCCGTTTGCAGTGTAAAAATTAAACCCCTGA
TTACAATTTCATAGGCTCATCATCTCAATTTTTCATCATAGCCATCGACA
CCAGGCCGCGGAGTTTGTGAGTTATTTGTGAACGGACAAAAGATTGGAGC
TCTTAATGTGTACACAGCTGAGTTCCCCAACGTCAAGATATTCTCTGGAG
ACATACAAAAGCAACCAGTTAACAACAAACACATTATCACTAATTTCTTC
TACAAGAATACAGGTAAGGCTGGTCATCGCAAAGACATAGTGTTTTTTCT
TGAGTTGAAAAAAATGTCCCCTGAGATAAGCTTCGAAAAAAGACCAACTC
TACCGACTCAAATTCTAATCGTATTCAATTCAAATGCAAATGTTGAAGAA
CTTTGTAATAGAGGGAAGGGTGTTGCCTGACATAATGAGATTCAGAAACC
TAAACGTGTACCTGTACTGTGTTATGAATCGCAGCGATGTATATTTgatg
aagatgatgattttctacGAGGTCAATAAATTTGTCAATGTAAACTTTCG
AATCTCTCTTTCTCTCATCAGCAAAAGTGGAATCATGCACGAAGACATGC
ACTGcaaacgtcatcaaaacaaaNTACTTGTAGGTTCACGCCATCCAGCC
ATTTATTTCCATCCCAACACACTGAGAGTGATGGTGTGTACGACCGAAGC
TGTCGGAGGTCATAGATGTATCATAATGCGAAGAGATATCCCCACTGGTC
AAACAAGTCATGTTCAATATACTTTCAAAGAAAACGTAAGACCTTAAGGA
TATCTGTACTTAAGTGTTTTTGAAGTATAGAAATTAGATCTAATAATTAT
ATAGGAAAGGGGTCAATATGAAATTGATAACACGAGGTTCGTAGATAATT
CGCCGTTTGCAGTGTAAAAATTAAACCCCTGATTACAATTTCATAGGCTC
ATCATCTCAATTTTTCATCATAGCCATCGACACCAGGCCGCGGAGTTTGT
GAGTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGTGTACACAGC
TGAGTTCCCCAATGTCAAGATATTCTCTGGAGACATACAAAAGCAACCAG
TTAACAACAAACACATTATCACTAATTTCTTCTACAAGAATACAGGTAAG
GCTGGTCATCGCAAAGACATAGTGTTTTTTCTTGAGTTGAAAAAAATGTC
CCCTGAGATAAGCTTCGAAAAAAGACCAACTCTACCGACTCAAATTCTAA
TCGTATTCAATTCAAATGCAAATGTTGAAGAACTTTGTAATAGAGGGAAG
GGTGTTGCCTGACATAATGAGATTCAGAAACCTAAACGTGTACCTGTACT
GTGTTATGAATCGCAGCGATGTATATTTgatgaagatgatgattttctac
GAGGTCAATAAATTTGTCAATGTAAACTTTCGAATCTCTCTTTCTCTCAT
CAGCAAAAGTGGAATCATGCACGAAAACATGCACTGcaaacgtcatcaaa
acaaaggtcaaCAAAAAGGAAGGTGAGAGAACAGGTTTCCCTTTACTTTG
GAGCTACATGTTATATTGGTGCTCGAgaattcaaaatgaaataaagatAC
TAAATTCAAATTGCGCATTTCCATGAGCTTagatttgaattgaatttatG
TGATTCGATCCAGGGTGATAGATGTTGtaaagaaagtttcaataatTCTG
CACCATTTTCGTTTATAGTCACTGTCGCTAAATACAACAAAACGCAATGT
CCGGTATCTTTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAACGG
ACGTTTGGCCTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAAGG
GCAATGCTGAATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAAC
AGATGGGTGGCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTCAA
TGTATGGATGCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAACA
AGAAATACAGGGTGAGTGCGGACCGATATATAATTATCTCCATTTGCATA
TATTCGCTTGTTTAGACATAAGAACAATATTCaacttaatatttttattt
ctatattCAATCTTAGTAACGGAGGTCTGTAATAGAATTGACTTTTCTCC
CTTCCATGCATCTTTGAATTATACCTCTCGACCGAAGCTATTCATCAAAT
GACTTTTTCATTAGATTGGTGTGATTCACAAATTGACCGATCAATGTCCA
GAGATTTCTTTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTACC
TGAAACTCATCAAGAACACTGATCAATGGAACACGGTACATCACTGAAAC
TGATGTGAGCAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAAC
TTAAATAGGATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGATA
AAAGTAGTTGTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaaa
attatttcaaaaacattaacCTTCCCTtcgagatttttcaaaaaacaggC
CCTGCGGAAGCGGaaagactggggagacttcagccacTTTTgattaaatt
agattttttttctcaaatttctagcgaatttaattttattatgagccttc
agcctccccacttttacggtcgttccgccgggcctgaaaAAGATATTTag
ggaattaatttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTAA
AAATCGGAACGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTata
tcatagtataagaaagccgcggctggaatatgtaccgcattgtcttttca
gttaattgctgttccatctctgtctccgagctttataagaacatcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042523XLOC_042523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068118-exon-scaffold_48-1491911889:172616..172639TCONS_00068118-exon-scaffold_48-1491911889:172616..172639Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:172616..172639TCONS_00068118-exon-scaffold_48-1510915933:172616..172639Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:172616..172639TCONS_00068118-exon-scaffold_48-1575043694:172616..172639Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:173016..173084TCONS_00068118-exon-scaffold_48-1491911889:173016..173084Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:173016..173084TCONS_00068118-exon-scaffold_48-1510915933:173016..173084Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:173016..173084TCONS_00068118-exon-scaffold_48-1575043694:173016..173084Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:173341..173373TCONS_00068118-exon-scaffold_48-1491911889:173341..173373Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:173341..173373TCONS_00068118-exon-scaffold_48-1510915933:173341..173373Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:173341..173373TCONS_00068118-exon-scaffold_48-1575043694:173341..173373Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:173710..173784TCONS_00068118-exon-scaffold_48-1491911889:173710..173784Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:173710..173784TCONS_00068118-exon-scaffold_48-1510915933:173710..173784Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:173710..173784TCONS_00068118-exon-scaffold_48-1575043694:173710..173784Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:174344..174474TCONS_00068118-exon-scaffold_48-1491911889:174344..174474Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:174344..174474TCONS_00068118-exon-scaffold_48-1510915933:174344..174474Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:174344..174474TCONS_00068118-exon-scaffold_48-1575043694:174344..174474Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:175036..175281TCONS_00068118-exon-scaffold_48-1491911889:175036..175281Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:175036..175281TCONS_00068118-exon-scaffold_48-1510915933:175036..175281Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:175036..175281TCONS_00068118-exon-scaffold_48-1575043694:175036..175281Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:175608..175716TCONS_00068118-exon-scaffold_48-1491911889:175608..175716Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:175608..175716TCONS_00068118-exon-scaffold_48-1510915933:175608..175716Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:175608..175716TCONS_00068118-exon-scaffold_48-1575043694:175608..175716Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:177013..177144TCONS_00068118-exon-scaffold_48-1491911889:177013..177144Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:177013..177144TCONS_00068118-exon-scaffold_48-1510915933:177013..177144Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:177013..177144TCONS_00068118-exon-scaffold_48-1575043694:177013..177144Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:177615..177871TCONS_00068118-exon-scaffold_48-1491911889:177615..177871Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:177615..177871TCONS_00068118-exon-scaffold_48-1510915933:177615..177871Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:177615..177871TCONS_00068118-exon-scaffold_48-1575043694:177615..177871Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:178012..178201TCONS_00068118-exon-scaffold_48-1491911889:178012..178201Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:178012..178201TCONS_00068118-exon-scaffold_48-1510915933:178012..178201Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:178012..178201TCONS_00068118-exon-scaffold_48-1575043694:178012..178201Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:178509..178661TCONS_00068118-exon-scaffold_48-1491911889:178509..178661Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:178509..178661TCONS_00068118-exon-scaffold_48-1510915933:178509..178661Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:178509..178661TCONS_00068118-exon-scaffold_48-1575043694:178509..178661Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:179749..179900TCONS_00068118-exon-scaffold_48-1491911889:179749..179900Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:179749..179900TCONS_00068118-exon-scaffold_48-1510915933:179749..179900Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:179749..179900TCONS_00068118-exon-scaffold_48-1575043694:179749..179900Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:180089..180260TCONS_00068118-exon-scaffold_48-1491911889:180089..180260Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:180089..180260TCONS_00068118-exon-scaffold_48-1510915933:180089..180260Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:180089..180260TCONS_00068118-exon-scaffold_48-1575043694:180089..180260Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:180569..180637TCONS_00068118-exon-scaffold_48-1491911889:180569..180637Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:180569..180637TCONS_00068118-exon-scaffold_48-1510915933:180569..180637Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:180569..180637TCONS_00068118-exon-scaffold_48-1575043694:180569..180637Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:180834..181126TCONS_00068118-exon-scaffold_48-1491911889:180834..181126Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:180834..181126TCONS_00068118-exon-scaffold_48-1510915933:180834..181126Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:180834..181126TCONS_00068118-exon-scaffold_48-1575043694:180834..181126Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1491911889:181330..182013TCONS_00068118-exon-scaffold_48-1491911889:181330..182013Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1510915933:181330..182013TCONS_00068118-exon-scaffold_48-1510915933:181330..182013Clytia hemisphaericaexon
TCONS_00068118-exon-scaffold_48-1575043694:181330..182013TCONS_00068118-exon-scaffold_48-1575043694:181330..182013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:172616..182013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.14039	10.8303	3.44385	0.32284	0.702078	0.096602	4.1665e-07	9.99957e-06	0.470072	0.272404	0	0.000307421	0	0.246906	0.0602763	0.147445	0.00413112	0.00109538	0.215096	0.40189	0.195268	1.87772	3.25947	0.423131	10.2827	6.13291	0	0.663489	0.641491	0.204722
Blast
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BLAST of TCONS_00068118 vs. Swiss-Prot (Human)
Match: MAMC2 (MAM domain-containing protein 2 OS=Homo sapiens GN=MAMDC2 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 2.051e-18
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 3 
Query:  519 KGGWNRVLMNIKKTPGTICTITWRASQSLSPEGRLNLDDITMYNRACPKPNEVEIPSAASCTLEGNTCEW---KETGLKWSYSNKTTPTLYTGPDLYYGKKVGPKYAFLEASGSNFPSVKGVLTSRKLKGDT-DNCFRMMAYMYGEDLGTLQVSFKSPNVTDK-VVYERKGDQGKRWFEAFVTIPANTETQIEIKGVTGTGPRSDIAIDDILVEPGNCDE 1163
            +G W +  +  KK P     +     +S    G + LDDIT+   +C    ++  P    CT E + C +   K     W      TPT YTGP   +   VG  Y ++EAS   +   K  L SR L+G +  +C     +MYG   G L V  K    +++ +++ R+G+Q   W  A +      + QI  + + G   RSDIAIDD+  + G C E
Sbjct:  451 RGVWMQAEITFKK-PMPTKVVFMSLCKSFWDCGLVALDDITIQLGSCSSSEKLP-PPPGECTFEQDECTFTQEKRNRSSWHRRRGETPTSYTGPKGDHTTGVG-YYMYIEASHMVYGQ-KARLLSRPLRGVSGKHCLTFFYHMYGGGTGLLSVYLKKEEDSEESLLWRRRGEQSISWLRALIEYSCERQHQIIFEAIRGVSIRSDIAIDDVKFQAGPCGE 666
The following BLAST results are available for this feature:
BLAST of TCONS_00068118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAMC22.051e-1830.00MAM domain-containing protein 2 OS=Homo sapiens GN... [more]
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