|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068162 ID=TCONS_00068162|Name=TCONS_00068162|organism=Clytia hemisphaerica|type=transcript|length=3088bp
TCTTCGCATCTTCTGCTATAAATTGGAATGATTATCAAATTATTTATCAA
GTAAACAACTTTTATTTATCAAGTAAACAACTAGAGGAAGattaacaaaa
acaagaaacaaaGTTCTATCCAAGGAAGCCTACCAAGGTGAAAGGTTTGG
CAAAGATGGATAATCATATTATCCTACTATCGTTTTTGATACTATGCTGT
TACGCTTGTTATGGCAACacacaatacattgccagacatGATATGACGCC
ATCGAGTTACCAGCAAGAGTTTAGCAAATTGCACCATAAAGGATATCGGT
TGAAGCAAGTCAGTGGTTACTCCACATCACAAGGGTACCCAAGGTATGCC
GCCATCTGGGTGAAAAACAGCCGCCCCAACATCGCATACAAGGCGAAACA
TGGAATGAGCAGCAAGGATTACCAGGAAGAGTTTCAAAAGAACCGTCTTC
TCTATCGTCTGGTCATGATCGAAGGATATCTTGTGAAAAAAGACAACAAA
TGGGAAGCTCGCTATGCAGCTATTTGGCATAAGAAAACATCGCTAGGAGC
AAACCAACCAGCTTACAAAACACACCATAAAATGTCATCAAGGACTTACC
AGACCCTATTCAACAAATACAAAACGCAAGGCTATCGATTGACTTGGGTT
AGTGCGTATACTATTGGCACGAAAAGCGACTACTATGCAGCAATATGGGA
AAAGAGATCAGGCCCTACCATGATCACTCGCCATCGAATGACCAGTTCTC
AATACCAATCTTACTTCAACGTATACACTCGTAGAGGATATCATTTGACA
CTGGTGGATGGGTATCAGTTGGACGGAAGTGAGAGATATGTTGCCATATG
GGAACGGATAGGTGGCGCAAGATCTGCTCGCCATGGTTTGATAGAGCCCA
ACTATCAAGCAGCTTTCGATAACCAGAAGTACCGTGGTTATAACCTCAAT
ATTGTCTCTGGATATTTAGTAGGATCGACCAAACGATACGCTGGTATTTG
GATCAACAGTGGAATCTGGACCACTCAAAACCTTAATCATATTGATAGCA
CAGTGAAAGACTTCCTCAAAGAAAACCAAATTCCTGGAGGTTCTTTAGCC
ATTACACGGCATGGAAAACTGGTCTTTGCTCAAGGCTATGGAAATGTGAA
TACCGGTTTAGATGCTTCACCAAGTCACCTTTGGAGGATTGCCAGTATTT
CAAAACCAATCACTGGCGTGGCCATCATGAAGCTGATTGAAGACGGTCAA
ATCAAGTTGAGTGACAGAGTATTTGGTCCAAACGGCATCCTTGGAAATGA
GTACAACAATGGAGAGTATAGCGCTAGAGAGCTCTTCATCACCGTACTTC
ATTTACTGGAGCATACAGCAGGAGGGACCACGTGGAATAACAAAGGCGGT
GATGGAAGCTCTGATCCAATGTTTCAACATACCACCTTCTCTCACAAACA
GCTCATTGATTGGGTGCTCAAGACTCGTGAACCGAGTCACTGGCCTGGTT
CAATCTACAGTTATTCCAATTTTGGTTATTGCATCTTAGGACGTATCatt
gaaaaagtaaccggtgTCACATACAGTGAATACGTTCGGACGAAGATCAT
GGAGCCTGCAAAATCGGAAAAGATGCACATCGCTGGAAACACCTACGCCC
AAAAACGACCGATGGAAACACGGTATTATTCAGGTGACGGCAATCCGTAC
ACCATGAACGTGCACCGAATGGATTCACACGGCGGATGGATTACAAACCC
GATCGACCTTCAGCGGTTCATGGTCCACTATGACGGTTTGTCAACAGTTG
ATGACTTGCTCAAGGGAAACACCATTCTGAACATGGTTAAACCGTCAGTT
CGAAATGCAGGCAAATGCAAAGGTGGATGGTCCATCAATGCGTTGAAGGA
TTGGTGGTGGCACGGAGGCTCCTTACCTGGCACCATGACTGTTCTGGTGA
GATTGGATGAGGTTCGTGGGTTGACTTGGTCCTTCTTTGTTAACAAAAGG
GGGAGCGGTGAAGTGGATCCATTGATGTGGAAAGTTGTCAATGGAATCAC
TGCTTGGCCAAGTGCGGGTGTTGacttattttaaaatattcatacCAAGT
ACAGATCTAAAGTGTATTCAAACATTAAAACAGGCGATTTGAAGTGAGGT
TAAATAGATACCTCAAATGTACGTACATTTACAAGTTGCTCAAATCTATA
CTTGTCACAAGGACTTTCACTGTAAATCTCTTCAGGGTAAAGGGACATCT
GTATTTTAATGTTATGTACTAAGTAATTTTAagtatctttttattcattc
aacAATTTTGATTCTATTTTGCCTACTCTCggcgggtacctaatagccgg
gggggggggctgctAAATAATTTTTCgacttattccaaacccccggcTAT
TAAGGCTAGCGTTGTCAGCGTCAAAACAAAAGACTGGTATCAATAGTGTT
AAAAAGTCGCATTTATTTTTAACCTTCCATTATATCTCTGGATAGGACGG
TCTCTAACTGCACTTCATTGACGAGAACACATCCACTGAGTTCTAGGAAT
CATGTGGTACCAATTGAACTATCTTTATAAGCAGATGGTATGTACAATGC
GTTTGTAGAAGAATAAAAGatgcattttgatttttttgggggattatttt
attatttatatataaaaaagttgtttgaaaatatataaaacatCCAGGGT
GAGAAATTATTTACAAATGTATACGTATTGGAGATGACGTCACTACCAGA
GTGGATCATCGTTGGTGATAATGCTGCAGACCTTTATGAGAAGAAACCAT
ATTCCGATACAAAAGGTGACGAGGGAGATGTCGTATGCGCTCCATGGTCT
TTCGGTGTCGCATTGGTCGAAAATAATGTCCACTGATGTTTTTTCTTGGC
TTTTTAGTTTACCAGTGCTatgaaagaaatgttttttacaaaataaattg
TTACCGTAGATGTTTGTACTTACTTGTTATCAAACGAACAATTATTTGAa
tatgaaagttttttaaatttaaactgAAAGTTAATTTGAGTTGCATGTTG
AATTGTGAAATTCAACAACACTCCAAAATTATCGGATT Run BLAST on NCBI protein sequence of TCONS_00068162-protein >TCONS_00068162-protein ID=TCONS_00068162-protein|Name=TCONS_00068162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=642bp
MDNHIILLSFLILCCYACYGNTQYIARHDMTPSSYQQEFSKLHHKGYRLK
QVSGYSTSQGYPRYAAIWVKNSRPNIAYKAKHGMSSKDYQEEFQKNRLLY
RLVMIEGYLVKKDNKWEARYAAIWHKKTSLGANQPAYKTHHKMSSRTYQT
LFNKYKTQGYRLTWVSAYTIGTKSDYYAAIWEKRSGPTMITRHRMTSSQY
QSYFNVYTRRGYHLTLVDGYQLDGSERYVAIWERIGGARSARHGLIEPNY
QAAFDNQKYRGYNLNIVSGYLVGSTKRYAGIWINSGIWTTQNLNHIDSTV
KDFLKENQIPGGSLAITRHGKLVFAQGYGNVNTGLDASPSHLWRIASISK
PITGVAIMKLIEDGQIKLSDRVFGPNGILGNEYNNGEYSARELFITVLHL
LEHTAGGTTWNNKGGDGSSDPMFQHTTFSHKQLIDWVLKTREPSHWPGSI
YSYSNFGYCILGRIIEKVTGVTYSEYVRTKIMEPAKSEKMHIAGNTYAQK
RPMETRYYSGDGNPYTMNVHRMDSHGGWITNPIDLQRFMVHYDGLSTVDD
LLKGNTILNMVKPSVRNAGKCKGGWSINALKDWWWHGGSLPGTMTVLVRL
DEVRGLTWSFFVNKRGSGEVDPLMWKVVNGITAWPSAGVDLF Run BLAST on NCBI transcript from alignment at scaffold_48:161639..165543- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068162 ID=TCONS_00068162|Name=TCONS_00068162|organism=Clytia hemisphaerica|type=transcript|length=3905bp|location=Sequence derived from alignment at scaffold_48:161639..165543- (Clytia hemisphaerica)
TCTTCGCATCTTCTGCTATAAATTGGAATGATTATCAAATTATTTATCAA
GTAAACAACTTTTATTTATCAAGTAAACAACTAGAGGAAGATTAACAAAA
ACAAGAAACAAAGTTCTATCCAAGGTAAGGTAGGATTCTTTGTAGAAATA
TAAATTGAGAATACTTATACGTGATTTTTCTCAGTTGTGGTCTATGCTCG
CTTACCCGAGCTACACTAATGAGTCTTGGGTAGAAACAGAATAATAGAAC
GCGTGTTTGCGGATAGATACGTAAATATGACGTATGAGTATCTTTTAACC
TACTGGTTCTTTAGCTGGATTATTTTGTACTCTTTTCGATAATTTCTTTT
TCTCTTTGGTTGGTGAAATCTCAATATCTTTCTTTTCATAGGAAGCCTAC
CAAGGTGAAAGGTTTGGCAAAGATGGATAATCATATTATCCTACTATCGT
TTTTGATACTATGCTGTTACGCTTGTTATGGCAACACACAATACATTGCC
AGACATGATATGACGCCATCGAGTTACCAGCAAGAGTTTAGCAAATTGCA
CCATAAAGGATATCGGTTGAAGCAAGTCAGTGGTTACTCCACATCACAAG
GGTACCCAAGGTATGCCGCCATCTGGGTGAAAAACAGCCGCCCCAACATC
GCATACAAGGCGAAACATGGAATGAGCAGCAAGGATTACCAGGAAGAGTT
TCAAAAGAACCGTCTTCTCTATCGTCTGGTCATGATCGAAGGATATCTTG
TGAAAAAAGACAACAAATGGGAAGCTCGCTATGCAGCTATTTGGCATAAG
AAAACATCGCTAGGAGCAAACCAACCAGCTTACAAAACACACCATAAAAT
GTCATCAAGGACTTACCAGACCCTATTCAACAAATACAAAACGCAAGGCT
ATCGATTGACTTGGGTTAGTGCGTATACTATTGGCACGAAAAGCGACTAC
TATGCAGCAATATGGGAAAAGAGATCAGGCCCTACCATGATCACTCGCCA
TCGAATGACCAGTTCTCAATACCAATCTTACTTCAACGTATACACTCGTA
GAGGATATCATTTGACACTGGTGGATGGGTATCAGTTGGACGGAAGTGAG
AGATATGTTGCCATATGGGAACGGATAGGTGGCGCAAGATCTGCTCGCCA
TGGTTTGATAGAGCCCAACTATCAAGCAGCTTTCGATAACCAGAAGTACC
GTGGTTATAACCTCAATATTGTCTCTGGATATTTAGTAGGATCGACCAAA
CGATACGCTGGTATTTGGATCAACAGTGGAATCTGGACCACTCAAAACCT
TAATCATATTGATAGCACAGTGAAAGACTTCCTCAAAGAAAACCAAATTC
CTGGAGGTTCTTTAGCCATTACACGGCATGGAAAACTGGTCTTTGCTCAA
GGCTATGGAAATGTGAATACCGGTTTAGATGCTTCACCAAGTCACCTTTG
GAGGATTGCCAGTATTTCAAAACCAATCACTGGCGTGGCCATCATGAAGC
TGATTGAAGACGGTAAGCACCTAGATTTCTTCAGAATGACAAATTGTTCG
TCATTTGTTTACATCCTTTAAAGTAAGGTTCGAACTAGAGGTTATGCTGT
AAAATGAGAACGATATGAATAGAAACGATATGAAAAGGAATTTGATGAAG
ACATAAGTATCTTGTTTGCACCATGCTTACGGTATAAAACAAAGTTCATA
ACGTCATTTTTGCAATTAAATTATCAATTAATTTTTAAGGAATTTGATCA
AAAGGCAATTTGTAAAGGCAATTCTTTGTTAAAAGTGTAAAGGAACCTGA
AACGTAACTTTCATGCTCAAATACCAAAATCAATTTTTTGACTACGGTTA
AGAGCCCTTAAGAAATTGTCAGCCGAGAAATTGTCAGCCACAATTAGAGA
TGAAACGCCCCTATGGGCGCATGGGACGTGGTGCTCCTATGTCCTTATTT
GCTTTATACAGTCAAAAATAAGCGTGGCATAACGTACGACGAGTACGTCC
TCAGGAATGGCCGAATATCTGCTAATTCACTCAACTCTGATAAACTCTCT
TTTATCCAACAGGTCAAATCAAGTTGAGTGACAGAGTATTTGGTCCAAAC
GGCATCCTTGGAAATGAGTACAACAATGGAGAGTATAGCGCTAGAGAGCT
CTTCATCACCGTACTTCATTTACTGGAGCATACAGCAGGAGGGACCACGT
GGAATAACAAAGGCGGTGATGGAAGCTCTGATCCAATGTTTCAACATACC
ACCTTCTCTCACAAACAGCTCATTGATTGGGTGCTCAAGACTCGTGAACC
GAGTCACTGGCCTGGTTCAATCTACAGTTATTCCAATTTTGGTTATTGCA
TCTTAGGACGTATCATTGAAAAAGTAACCGGTGTCACATACAGTGAATAC
GTTCGGACGAAGATCATGGAGCCTGCAAAATCGGAAAAGATGCACATCGC
TGGAAACACCTACGCCCAAAAACGACCGATGGAAACACGGTATTATTCAG
GTGACGGCAATCCGTACACCATGAACGTGCACCGAATGGATTCACACGGC
GGATGGATTACAAACCCGATCGACCTTCAGCGGTTCATGGTCCACTATGA
CGGTTTGTCAACAGTTGATGACTTGCTCAAGGGAAACACCATTCTGAACA
TGGTTAAACCGTCAGTTCGAAATGCAGGCAAATGCAAAGGTGGATGGTCC
ATCAATGCGTTGAAGGATTGGTGGTGGCACGGAGGCTCCTTACCTGGCAC
CATGACTGTTCTGGTGAGATTGGATGAGGTTCGTGGGTTGACTTGGTCCT
TCTTTGTTAACAAAAGGGGGAGCGGTGAAGTGGATCCATTGATGTGGAAA
GTTGTCAATGGAATCACTGCTTGGCCAAGTGCGGGTGTTGACTTATTTTA
AAATATTCATACCAAGTACAGATCTAAAGTGTATTCAAACATTAAAACAG
GCGATTTGAAGTGAGGTTAAATAGATACCTCAAATGTACGTACATTTACA
AGTTGCTCAAATCTATACTTGTCACAAGGACTTTCACTGTAAATCTCTTC
AGGGTAAAGGGACATCTGTATTTTAATGTTATGTACTAAGTAATTTTAAG
TATCTTTTTATTCATTCAACAATTTTGATTCTATTTTGCCTACTCTCGGC
GGGTACCTAATAGCCGGGGGGGGGGGCTGCTAAATAATTTTTCGACTTAT
TCCAAACCCCCGGCTATTAAGGCTAGCGTTGTCAGCGTCAAAACAAAAGA
CTGGTATCAATAGTGTTAAAAAGTCGCATTTATTTTTAACCTTCCATTAT
ATCTCTGGATAGGACGGTCTCTAACTGCACTTCATTGACGAGAACACATC
CACTGAGTTCTAGGAATCATGTGGTACCAATTGAACTATCTTTATAAGCA
GATGGTATGTACAATGCGTTTGTAGAAGAATAAAAGATGCATTTTGATTT
TTTTGGGGGATTATTTTATTATTTATATATAAAAAAGTTGTTTGAAAATA
TATAAAACATCCAGGGTGAGAAATTATTTACAAATGTATACGTATTGGAG
ATGACGTCACTACCAGAGTGGATCATCGTTGGTGATAATGCTGCAGACCT
TTATGAGAAGAAACCATATTCCGATACAAAAGGTGACGAGGGAGATGTCG
TATGCGCTCCATGGTCTTTCGGTGTCGCATTGGTCGAAAATAATGTCCAC
TGATGTTTTTTCTTGGCTTTTTAGTTTACCAGTGCTATGAAAGAAATGTT
TTTTACAAAATAAATTGTTACCGTAGATGTTTGTACTTACTTGTTATCAA
ACGAACAATTATTTGAATATGAAAGTTTTTTAAATTTAAACTGAAAGTTA
ATTTGAGTTGCATGTTGAATTGTGAAATTCAACAACACTCCAAAATTATC
GGATT Coding sequence (CDS) from alignment at scaffold_48:161639..165543- >TCONS_00068162 ID=TCONS_00068162|Name=TCONS_00068162|organism=Clytia hemisphaerica|type=CDS|length=1929bp|location=Sequence derived from alignment at scaffold_48:161639..165543- (Clytia hemisphaerica)
ATGGATAATCATATTATCCTACTATCGTTTTTGATACTATGCTGTTACGC
TTGTTATGGCAACACACAATACATTGCCAGACATGATATGACGCCATCGA
GTTACCAGCAAGAGTTTAGCAAATTGCACCATAAAGGATATCGGTTGAAG
CAAGTCAGTGGTTACTCCACATCACAAGGGTACCCAAGGTATGCCGCCAT
CTGGGTGAAAAACAGCCGCCCCAACATCGCATACAAGGCGAAACATGGAA
TGAGCAGCAAGGATTACCAGGAAGAGTTTCAAAAGAACCGTCTTCTCTAT
CGTCTGGTCATGATCGAAGGATATCTTGTGAAAAAAGACAACAAATGGGA
AGCTCGCTATGCAGCTATTTGGCATAAGAAAACATCGCTAGGAGCAAACC
AACCAGCTTACAAAACACACCATAAAATGTCATCAAGGACTTACCAGACC
CTATTCAACAAATACAAAACGCAAGGCTATCGATTGACTTGGGTTAGTGC
GTATACTATTGGCACGAAAAGCGACTACTATGCAGCAATATGGGAAAAGA
GATCAGGCCCTACCATGATCACTCGCCATCGAATGACCAGTTCTCAATAC
CAATCTTACTTCAACGTATACACTCGTAGAGGATATCATTTGACACTGGT
GGATGGGTATCAGTTGGACGGAAGTGAGAGATATGTTGCCATATGGGAAC
GGATAGGTGGCGCAAGATCTGCTCGCCATGGTTTGATAGAGCCCAACTAT
CAAGCAGCTTTCGATAACCAGAAGTACCGTGGTTATAACCTCAATATTGT
CTCTGGATATTTAGTAGGATCGACCAAACGATACGCTGGTATTTGGATCA
ACAGTGGAATCTGGACCACTCAAAACCTTAATCATATTGATAGCACAGTG
AAAGACTTCCTCAAAGAAAACCAAATTCCTGGAGGTTCTTTAGCCATTAC
ACGGCATGGAAAACTGGTCTTTGCTCAAGGCTATGGAAATGTGAATACCG
GTTTAGATGCTTCACCAAGTCACCTTTGGAGGATTGCCAGTATTTCAAAA
CCAATCACTGGCGTGGCCATCATGAAGCTGATTGAAGACGGTCAAATCAA
GTTGAGTGACAGAGTATTTGGTCCAAACGGCATCCTTGGAAATGAGTACA
ACAATGGAGAGTATAGCGCTAGAGAGCTCTTCATCACCGTACTTCATTTA
CTGGAGCATACAGCAGGAGGGACCACGTGGAATAACAAAGGCGGTGATGG
AAGCTCTGATCCAATGTTTCAACATACCACCTTCTCTCACAAACAGCTCA
TTGATTGGGTGCTCAAGACTCGTGAACCGAGTCACTGGCCTGGTTCAATC
TACAGTTATTCCAATTTTGGTTATTGCATCTTAGGACGTATCATTGAAAA
AGTAACCGGTGTCACATACAGTGAATACGTTCGGACGAAGATCATGGAGC
CTGCAAAATCGGAAAAGATGCACATCGCTGGAAACACCTACGCCCAAAAA
CGACCGATGGAAACACGGTATTATTCAGGTGACGGCAATCCGTACACCAT
GAACGTGCACCGAATGGATTCACACGGCGGATGGATTACAAACCCGATCG
ACCTTCAGCGGTTCATGGTCCACTATGACGGTTTGTCAACAGTTGATGAC
TTGCTCAAGGGAAACACCATTCTGAACATGGTTAAACCGTCAGTTCGAAA
TGCAGGCAAATGCAAAGGTGGATGGTCCATCAATGCGTTGAAGGATTGGT
GGTGGCACGGAGGCTCCTTACCTGGCACCATGACTGTTCTGGTGAGATTG
GATGAGGTTCGTGGGTTGACTTGGTCCTTCTTTGTTAACAAAAGGGGGAG
CGGTGAAGTGGATCCATTGATGTGGAAAGTTGTCAATGGAATCACTGCTT
GGCCAAGTGCGGGTGTTGACTTATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068162-exon-scaffold_48-1575043694:165420..165543 | TCONS_00068162-exon-scaffold_48-1575043694:165420..165543 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1575043694:164032..165152 | TCONS_00068162-exon-scaffold_48-1575043694:164032..165152 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1575043694:161639..163481 | TCONS_00068162-exon-scaffold_48-1575043694:161639..163481 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1510915933:165420..165543 | TCONS_00068162-exon-scaffold_48-1510915933:165420..165543 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1510915933:164032..165152 | TCONS_00068162-exon-scaffold_48-1510915933:164032..165152 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1510915933:161639..163481 | TCONS_00068162-exon-scaffold_48-1510915933:161639..163481 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1491911889:165420..165543 | TCONS_00068162-exon-scaffold_48-1491911889:165420..165543 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1491911889:164032..165152 | TCONS_00068162-exon-scaffold_48-1491911889:164032..165152 | Clytia hemisphaerica | exon |
| TCONS_00068162-exon-scaffold_48-1491911889:161639..163481 | TCONS_00068162-exon-scaffold_48-1491911889:161639..163481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:161639..165543 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001466 | Beta-lactam-related |
| IPR012338 | Beta-lactam/transpept-like |
Blast
The following BLAST results are available for this feature:
|
