TCONS_00068167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068167
Unique NameTCONS_00068167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068167 ID=TCONS_00068167|Name=TCONS_00068167|organism=Clytia hemisphaerica|type=transcript|length=1178bp
ACTGTTTTAGAAATCATGACATGAAatctttaagaatatttaaaccttgc
tgatttcaaaatttacctttattgataaagttattttaaaaatattctag
ttaaaataaaacaaaagtgTTATAGATGTCAAGAACCTCAATTAACGATG
ATgatgaaaatttgtttaaatGGCTGGAAGGAGGAAAGCTGCTTATCTCC
ATTATATTCCTTGGTGTTggtATTTTCATGGTCGTTTTGTGGGCTAAACG
CCAAATATTGCGGTTGTACTTGATTAATAAGAAAGGTCCTATTGACCAAG
CTGGACATGCAGCTCCAAAGGGATTAAGAAGAGAGATTGAAAACAGCTTC
AACAAGATATCAGGTTTGCGGCTTGAACCAAAACTTCTTTCGGATCCAGG
TCAACATGAACCATTATTGAATTCTTTTGTTGATGAGCGAGatgaTAGCA
GCTACAAATTCAGAAGAAAGGCTTTCGATCTAATGAGCTGTTTGGATGAA
CTGCTGAGTCGAGTAGATTTTGGCCTGGCCCGCAAGCCATCACAGAATGT
TCGAGAACACTTGGTATCACTCCAATCTCCACCTTACGCTCCTTTTGAAG
GAAAAGAATATGAAAATCTTTGTGAACAAGTCACCAGGTTATACGAACAT
GCCAGATACGGTGCAAAGGAATTTGGTGAGCAAGACTACCATGTGTATTC
AGAAAAAATAGATCAGTTATACGACAGAGTTCATCAAAAGCTTTTAGTAC
CTGGCAGCTTGGTTGTTCATGCAGACCATCAACATCAAGTCAAAACACAA
AGTCAATGTACTTCAAATGTGGAAACAGAGTTGACGAGCCAAGTCATATT
ACCCTCAACACTGGTCGAAAGCAAAACGTCTGGTTTGAGAAATCGAGATG
GAAGCAAAAATATTgtatgaattgaattgaatgcaCAAAATATATGTACA
TAATCGATTTTCATTTGTAATTTATATAtcatttttctagattttaccat
tatttatttgttttattacaCAATATCATATTATGGTTATCTGAAAAAAT
TGATACTCAAAAGGGTGTTGAGTACTATGTGGACACTTTTTCAAGGAGTT
GCGCCGTCTTTGAGAAAATAACCAAATCTGCCTCGCCTTCTTACCTTTGA
TTTAAGTAATAATCACCCATCAACCCTA
Run BLAST on NCBI

protein sequence of TCONS_00068167-protein

>TCONS_00068167-protein ID=TCONS_00068167-protein|Name=TCONS_00068167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MSRTSINDDDENLFKWLEGGKLLISIIFLGVGIFMVVLWAKRQILRLYLI
NKKGPIDQAGHAAPKGLRREIENSFNKISGLRLEPKLLSDPGQHEPLLNS
FVDERDDSSYKFRRKAFDLMSCLDELLSRVDFGLARKPSQNVREHLVSLQ
SPPYAPFEGKEYENLCEQVTRLYEHARYGAKEFGEQDYHVYSEKIDQLYD
RVHQKLLVPGSLVVHADHQHQVKTQSQCTSNVETELTSQVILPSTLVESK
TSGLRNRDGSKNIV
Run BLAST on NCBI

transcript from alignment at scaffold_48:244190..246704-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068167 ID=TCONS_00068167|Name=TCONS_00068167|organism=Clytia hemisphaerica|type=transcript|length=2515bp|location=Sequence derived from alignment at scaffold_48:244190..246704- (Clytia hemisphaerica)
ACTGTTTTAGAAATCATGACATGAAATCTTTAAGAATATTTAAACCTTGC
TGATTTCAAAATTTACCTTTATTGATAAAGTTATTTTAAAAATATTCTAG
TTAAAATAAAACAAAAGTGTTATAGATGTCAAGAACCTCAATTAACGATG
ATGATGAAAATTTGTTTAAATGGCTGGAAGGAGGAAAGCTGCTTATCTCC
ATTATATTCCTTGGTGTTGTAAGTTTTTACCTTCGTTGCTCTTTGTTTTC
ATCAGACCTCTATTTTATTAAGTTGTCTTATTTTATTTGTGTTTTTTTTC
TTTTGCAATGAAAAATAACAGTAAAAAAAAGCCTTTGATATAAAATAAGC
GAAGAAAAAGAGCCCTCTTCAGGAAAGGCAACCCTGCTTCTTTTAGAATT
TTTTTTTATAGACTGGTTCCTGATTTAACTTTAATATCAGGAAACTGGTT
ATTTGTCAAAGCGCTTTTCCCAGAATAACAATGTCTTTGACAGGGCCTCT
CTTCTTGGTCTTTGTATATTATCCAATGTCTAATTTTTATTTTAGGGTAT
TTTCATGGTCGTTTTGTGGGCTAAACGCCAAATATTGCGGTTGTACTTGA
TTAATAAGAAAGGTCCTATTGACCAAGCTGGACATGCAGCTCCAAAGGTT
AGTGATTTGTGACACTCCATTCAAAGTATATCTTACACATATTTTCTGTA
TCCATTATATATCACATATTATCTTTTAATCCTCAAGAATGATACACCTC
CAAAATTTATTTTTATCTTGCAGGGATTAAGAAGAGAGATTGAAAACAGC
TTCAACAAGATATCAGGTTTGCGGCTTGAACCAAAACTTCTTTCGGATCC
AGGTCAACATGAACCATTATTGAATTCTTTTGTTGATGAGCGAGGTATTT
AGTTATTTTTTCTACATTTGTATCTTTTTGTTTCATATTTTTCTTATTCT
AGGTAGAAAAACTGATATTTAAAGAAAATTTAAACTAGGGGCGGGCTGGG
GGTTGTTGCTGAAGTTTTTATTTAGAAATAGAATGGTTGTTGTTCGTTAA
AATACGTTCCTTGATATAAATATGTTATTCTAATCTGTGTTTTTATTTTT
TCAGATGATAGCAGCTACAAATTCAGAAGAAAGGCTTTCGATCTAATGAG
CTGTTTGGGTGAGAATGAGTATAATTGTCTTTTTTGCTGTTTTTTACCCC
AGTATCATTTGCTTTGTCATCTGCTGGTTGCTAAACAGGGATTCTCTTGT
TATAGCCTCATACATGATACTGTTTTTTTGATAATGGTGATTGAGATCTG
TTTTTCACCTTAATTCAGATGAACTGCTGAGTCGAGTAGATTTTGGCCTG
GCCCGCAAGCCATCACAGAATGTTCGAGAACACTTGGTATCACTCCAATC
TCCACCTTACGCTCCTTTTGAAGGAAAAGAATATGAAAATCTTTGTGAAC
AAGTCACCAGGTTATACGAACATGCCAGATACGGTGCAAAGGTTAGTCAC
TCAGGGTTCATATATTGATTAGAAAAGATATACAGCTTTTGAATTTGAAG
AATGTTTCAAATAGTGAACGAATGGATGGTCAGGATCTTCACAAAGTGAA
TTATTTTTAATCCTACCTGGTATTTCGGATAAAAAACAAGAGAGCTACTT
GGGACGAGGTGTAGTTTTTATAAGCTCTTATTTGATTTAGTTGGTCCGTA
ACCAGTAATAAAAAAATTCGTTACTTTTCTAAAGAACGTGTAATTTTTAT
TACTTCAAATGATCAGTTATTAAAGTATCTTATAAAAACTCCAACTCATC
TGAGCTACTTAGCAAGTCCTAAGAATTGTATTACATATAACATGATTATC
TGCATTTTGTTTAACTGTATTTCATATTCAGGAATTTGGTGAGCAAGACT
ACCATGTGTATTCAGAAAAAATAGATCAGTTATACGACAGGTAAACTTGA
AATGCTTTTGAATTGTTCTTTTTACCATGATGTTTCTTAGTATTTGAGGA
AATCAGTTTGAATTTGTTCTTTAATAAAGGTACTTAGACTTTTGCATCCG
GTTGATTTCTTTAGAGTTCATCAAAAGCTTTTAGTACCTGGCAGCTTGGT
TGTTCATGCAGACCATCAACATCAAGTCAAAACACAAAGTCAATGTACTT
CAAATGTGGAAACAGAGTTGACGAGCCAAGTCATATTACCCTCAACACTG
GTCGAAAGCAAAACGTCTGGTTTGAGAAATCGAGATGGAAGCAAAAATAT
TGTATGAATTGAATTGAATGCACAAAATATATGTACATAATCGATTTTCA
TTTGTAATTTATATATCATTTTTCTAGATTTTACCATTATTTATTTGTTT
TATTACACAATATCATATTATGGTTATCTGAAAAAATTGATACTCAAAAG
GGTGTTGAGTACTATGTGGACACTTTTTCAAGGAGTTGCGCCGTCTTTGA
GAAAATAACCAAATCTGCCTCGCCTTCTTACCTTTGATTTAAGTAATAAT
CACCCATCAACCCTA

Coding sequence (CDS) from alignment at scaffold_48:244190..246704-

>TCONS_00068167 ID=TCONS_00068167|Name=TCONS_00068167|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_48:244190..246704- (Clytia hemisphaerica)
ATGTCAAGAACCTCAATTAACGATGATGATGAAAATTTGTTTAAATGGCT
GGAAGGAGGAAAGCTGCTTATCTCCATTATATTCCTTGGTGTTGGTATTT
TCATGGTCGTTTTGTGGGCTAAACGCCAAATATTGCGGTTGTACTTGATT
AATAAGAAAGGTCCTATTGACCAAGCTGGACATGCAGCTCCAAAGGGATT
AAGAAGAGAGATTGAAAACAGCTTCAACAAGATATCAGGTTTGCGGCTTG
AACCAAAACTTCTTTCGGATCCAGGTCAACATGAACCATTATTGAATTCT
TTTGTTGATGAGCGAGATGATAGCAGCTACAAATTCAGAAGAAAGGCTTT
CGATCTAATGAGCTGTTTGGATGAACTGCTGAGTCGAGTAGATTTTGGCC
TGGCCCGCAAGCCATCACAGAATGTTCGAGAACACTTGGTATCACTCCAA
TCTCCACCTTACGCTCCTTTTGAAGGAAAAGAATATGAAAATCTTTGTGA
ACAAGTCACCAGGTTATACGAACATGCCAGATACGGTGCAAAGGAATTTG
GTGAGCAAGACTACCATGTGTATTCAGAAAAAATAGATCAGTTATACGAC
AGAGTTCATCAAAAGCTTTTAGTACCTGGCAGCTTGGTTGTTCATGCAGA
CCATCAACATCAAGTCAAAACACAAAGTCAATGTACTTCAAATGTGGAAA
CAGAGTTGACGAGCCAAGTCATATTACCCTCAACACTGGTCGAAAGCAAA
ACGTCTGGTTTGAGAAATCGAGATGGAAGCAAAAATATTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042547XLOC_042547Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068167-proteinTCONS_00068167-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068167-exon-scaffold_48-1575043694:246487..246704TCONS_00068167-exon-scaffold_48-1575043694:246487..246704Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1575043694:246058..246159TCONS_00068167-exon-scaffold_48-1575043694:246058..246159Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1575043694:245811..245931TCONS_00068167-exon-scaffold_48-1575043694:245811..245931Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1575043694:245547..245600TCONS_00068167-exon-scaffold_48-1575043694:245547..245600Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1575043694:245214..245386TCONS_00068167-exon-scaffold_48-1575043694:245214..245386Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1575043694:244765..244823TCONS_00068167-exon-scaffold_48-1575043694:244765..244823Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1575043694:244190..244640TCONS_00068167-exon-scaffold_48-1575043694:244190..244640Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:246487..246704TCONS_00068167-exon-scaffold_48-1510915933:246487..246704Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:246058..246159TCONS_00068167-exon-scaffold_48-1510915933:246058..246159Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:245811..245931TCONS_00068167-exon-scaffold_48-1510915933:245811..245931Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:245547..245600TCONS_00068167-exon-scaffold_48-1510915933:245547..245600Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:245214..245386TCONS_00068167-exon-scaffold_48-1510915933:245214..245386Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:244765..244823TCONS_00068167-exon-scaffold_48-1510915933:244765..244823Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1510915933:244190..244640TCONS_00068167-exon-scaffold_48-1510915933:244190..244640Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:246487..246704TCONS_00068167-exon-scaffold_48-1491911889:246487..246704Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:246058..246159TCONS_00068167-exon-scaffold_48-1491911889:246058..246159Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:245811..245931TCONS_00068167-exon-scaffold_48-1491911889:245811..245931Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:245547..245600TCONS_00068167-exon-scaffold_48-1491911889:245547..245600Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:245214..245386TCONS_00068167-exon-scaffold_48-1491911889:245214..245386Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:244765..244823TCONS_00068167-exon-scaffold_48-1491911889:244765..244823Clytia hemisphaericaexon
TCONS_00068167-exon-scaffold_48-1491911889:244190..244640TCONS_00068167-exon-scaffold_48-1491911889:244190..244640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:244190..246704 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
90.1039	91.0074	43.4032	36.5825	21.5272	17.2842	25.7481	25.2067	35.6042	26.0635	26.5961	27.5782	23.4734	24.6808	15.239	14.1897	30.9482	26.7064	19.6936	25.2915	25.9477	24.6048	55.8327	53.3552	24.8043	23.4002	15.563	10.7157	31.3313	30.1
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010876NICE-3_prd
Blast
[Close]
BLAST of TCONS_00068167 vs. Swiss-Prot (Human)
Match: CA043 (Uncharacterized protein C1orf43 OS=Homo sapiens GN=C1orf43 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.492e-17
Identity = 69/239 (28.87%), Postives = 117/239 (48.95%), Query Frame = 3 
Query:  171 WLEGGKLLISIIFLGVGIFMVVLWAKRQILRLYLINKKGPIDQAGHAAPKGLRREIENSFNKISGLRLEPKLLSDPGQHEPLLNSFVDERDDSSYK--FRRKAFDLMSCLDELLSRVDF-GLARKP----SQNVREHLVSLQSPPYAPFEGKEYENLCEQVTRLYEHARYGAKEFGEQDYHVYSEKIDQLYDRVHQKLLVPGSLVVHADHQHQVK--TQSQCTSNVETELTSQVILPST 860
            WL G  +++ + +  +   ++ ++ KRQI+R  + +++GP    GH APK L+ EI+   +++  ++ EP+LL+D    +  L     + + S Y   +R KA D +       S + F    R P     +N R +L+ L++    PF+G   + L + +   YE ARYG   FG+ +Y  Y E + +L   V  ++   GS   H  HQ   K  TQS   S    ++T    LPS+
Sbjct:    7 WLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQDIKYEPQLLAD---DDARLLQLETQGNQSCYNYLYRMKALDAIRT-----SEIPFHSEGRHPRSLMGKNFRSYLLDLRNTS-TPFKGVR-KALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARI---GSSQRH--HQSAAKDLTQSPEVSPTTIQVT---YLPSS 227
The following BLAST results are available for this feature:
BLAST of TCONS_00068167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CA0432.492e-1728.87Uncharacterized protein C1orf43 OS=Homo sapiens GN... [more]
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