TCONS_00068192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068192
Unique NameTCONS_00068192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068192 ID=TCONS_00068192|Name=TCONS_00068192|organism=Clytia hemisphaerica|type=transcript|length=301bp
ccaaaaatgtatagtttgttatggtttagggactggaactggggcggaaa
aattaatgcaattctgggacatgcattaagttacccgagcaCACAATGAT
TATaataatagaaataaaaatttatttataagtcGTTAACAgtgggcctc
taaaccgatcaTGGGTTATATTTTTATAGAGTTGTATTTTCTTCGGGTGA
TTTTCCCATGCCTGCTTTAGCTTTTCATTGCAGTCTTTTATTGAATTATC
ACTTCCCTTTGCAATTTGTTTCATGTTGGGATACCTTTCTAATAGAAAGA
T
Run BLAST on NCBI

transcript from alignment at scaffold_48:284935..285235

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068192 ID=TCONS_00068192|Name=TCONS_00068192|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_48:284935..285235 (Clytia hemisphaerica)
ATCTTTCTATTAGAAAGGTATCCCAACATGAAACAAATTGCAAAGGGAAG
TGATAATTCAATAAAAGACTGCAATGAAAAGCTAAAGCAGGCATGGGAAA
ATCACCCGAAGAAAATACAACTCTATAAAAATATAACCCAtgatcggttt
agaggcccacTGTTAACgacttataaataaatttttatttctattattAT
AATCATTGTGtgctcgggtaacttaatgcatgtcccagaattgcattaat
ttttccgccccagttccagtccctaaaccataacaaactatacatttttg
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042568XLOC_042568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068192-exon-scaffold_48-1491911889:284935..285235TCONS_00068192-exon-scaffold_48-1491911889:284935..285235Clytia hemisphaericaexon
TCONS_00068192-exon-scaffold_48-1510915933:284935..285235TCONS_00068192-exon-scaffold_48-1510915933:284935..285235Clytia hemisphaericaexon
TCONS_00068192-exon-scaffold_48-1575043694:284935..285235TCONS_00068192-exon-scaffold_48-1575043694:284935..285235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:284935..285235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65362	1.62455	1.43146	0.455487	0.719997	0.546339	0.873336	1.9942	1.81467	3.08626	1.72585	1.20157	1.46537	0.280585	1.19083	1.64393	1.35351	1.97926	0	0.888246	1.23991	2.92228	0.883208	0	1.84068	0.796165	2.82773	1.81966	2.26761	2.83151
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top