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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068209 ID=TCONS_00068209|Name=TCONS_00068209|organism=Clytia hemisphaerica|type=transcript|length=2852bp
aaaaaagtaaacgcAGAACGTAAGAAGAAAGTAAGTAATGTTCTCTGCAA
GAATACAAATGGACATGTATAAAATCTTAATTTGTACCTTAATGATTTCC
CTTATCATTAATGGCACTCTTGCGCAAGAAATGCAACTTAACTCTCATTT
TCGcctggaaaaagaaaattacacCATTAAAAATGGCTCTCATATACCAT
CAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATGCTTGTTAAAATGT
CAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTCTGAAGTTGGGTTC
AGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTCATGAAATTGAGTT
ATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTACTGCACGAAGTTGT
TTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAAATACT
GCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGTGGCGGTT
GGACAATGATTCAACACCGATTAAACGGTGACATTGATTTCAATCGAAGT
TGGCAATCATACAAAGAAGGCTTTGGCGATGTCAATGGTGATTTTTGGAT
TGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAACAACTCTTTGA
TTCGAATTCAAGGTGAAAGTTTTAACGGAGATCGAAGATTTATCATTGCA
AAGGGATTCTGCATCGAAGACGAACAAAAGAAATACAAATTGCATTCTGG
GACAATGATCAATGATGAATGGAATATCGGAGGTGATTGGACATATCATG
ATGGTTTAAAGTTCACAACACGGGATGACGATAACGATTCAAAGGAGCAT
AACTGCGCTGATGAACACAGTAGTGGCTGGTGGTATAAAGGTTGTTATGC
AATAAATGCTAATAAAGCACCAGCAAAACAACAGCAAACAACATATGCAG
GTGGTATGAGCTGGCCCGCCTGGCTGGGCAGTCACTCTCAATCATTGAAA
GCAATGAATATGGCAATAAAGAAAATGACCTAATCAAAAGCCTCCTTTTT
AATAACAACAATTTAATTAGATTAATTTGACCGAAATTTAATCAATGAGC
CTCatttaatcaaaaaaaatacgtaagtaatagttatcgcacaGTACCGA
ATACAATATGGGATATGTTTTTCTCGTTTAGAGTTTTCTATAATTAcctt
agcgagcacctcactaaaaaccgggattttctatttcgttaattgcgtaa
aaaaacgcgggtgacgtttAGTATAGGCTATAATTACCTCGCCTATATCT
AATATTGTACCGGTTAAAGTATGATGTCTGGTTTATCGTCGACTTGAAAA
ATAGCtatctttttctctattttgtttttctcttcttggttttctctctc
tctattttgataaaatctacATCAACACATTCGAAAAAAACATTTCTGAT
AAGTTGTTGTGTATTGCAAgcgaaaagaaaatttctaaccataaaattgt
aaaatctaCGATAtctcgcttaccagaccccGTTTTTGAACCCAGCCTTG
TAATTTTATATAGGATATGCCCCctgtcataattgtcacaattgagtgca
ttttcaagcaatctagagctcaaattttcaaaattcccccctcgggccaa
tcCGGTTGGCCCTCGcagtgtcactaaacttcagccccaaTATGGAAAta
cttcctacggcactgcttTGAGTGAAAAGATATCGTAATAAAAAAGTAAT
ACCCTGTTTCAAAGTTgattgtacacgcttttttttttataagaatacac
tttataagaatgtccatgatgaaaatggccaaaaaattaagaatatgcta
agaatatcaccatcatggaattttgagacgtatgtactaaatgttaagtc
tagtctgaattaggatcctaacctaagaatactgtaaggatatttcagga
tgattttcccaaaaaagttaagaatatccatgatgaaatggatttacacc
attcttataaaaaaaaaagcgtgtaagggGCTTATTACAAGccttttaaa
atgcttttaaaaatccgcaaagaaattgaaaaaatgaaaacgaaatACAG
AAGAattgatcaaaaatttccaaattaaacTTCCCTGAGAGTGGGACCTT
AACAGATTTCAAATAATCTATTCAGAATTTGCTAAATCTTGGTTAAATAT
TCGGGCGATAGGTCCAGTtcaaacattttaagcctaattttcAGAGAAAA
CTTGAGAAACGGAATTCTTTCGCGACAGACTTCAAGAAAATACTGGTTTt
aaagtttctttctttttattatataagttcattagttttttagttttatc
agattatttaaaaaaacggAGCGATACCGATCAAAGATATAAAGAAAATA
TGTAGCTAAAAAAGATGACATAATGGTCTCTAAAAACCTGTATTTCaact
taaaattttcacatAATTTATATAGCACAAACGTAAAGCTTACACTAGAG
CCCATCCATATTTCATTGGGCAAACACCTTTGTAGTTAGTAACAAATATT
GTTAACACGTTATTGTTATTCTGTAACTGTAAGCATACTCTTTTTATTgt
aaaagaaatttataaaaagagGATAATGGCTTACATTAGCGCAAACAACA
AAGAGCAGTCTGAAGATAATACAGAATaatgttcgaactcgatacttttt
tccggacacccggTCATTTGCCCTTAAGGGTGTTTATTTCAGCTAATGGA
TTTCTTTTGCTGTTGTTCAAAataatctgcataattagcgggATTCGGAT
TTCCTAGCAATTCCaatgatataaccgcatcacgACCGCATCGTTAGATA
AA Run BLAST on NCBI transcript from alignment at scaffold_480:40797..44599+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068209 ID=TCONS_00068209|Name=TCONS_00068209|organism=Clytia hemisphaerica|type=transcript|length=3803bp|location=Sequence derived from alignment at scaffold_480:40797..44599+ (Clytia hemisphaerica)
aaaaaagtaaacgcAGAACGTAAGAAGAAAGTAAGTAATGTTCTCTGCAA
GAATACAAATGGACATGTATAAAATCTTAATTTGTACCTTAATGATTTCC
CTTATCATTAATGGCACTCTTGCGCAAGAAATGCAACTTAACTCTCATTT
TCGcctggaaaaagaaaattacacCATTAAAAATGGCTCTCATATACCAT
CAGAAGAATTTGTTATCAAAGGCTCGGAAATTGAATGCTTGTTAAAATGT
CAACTCAATTATTTGGTGTGCTTCACTCTTCAAATTCTGAAGTTGGGTTC
AGCAAGCTGGTTGTGTCGATTTTACGACGTCGATTTCATGAAATTGAGTT
ATGAATCAAAAGAGGGGTCAATGGTTTATTCTACTACTGCACGAAGTTGT
TTAGAATGGTTGGAAAGAGGCTTCACATTGGATGGTGTGTATAAAATACT
GCCCGTTGGAGAAGAAAAGGAAGTCTACTGTGATATGACTGGTAAATAAA
GTTCCCATTAATTTTCTAGACTACACTATACAGAGCTTTTCATTGACTGA
ACAATTGAATAGCAAAGTGAGACTAAACCAAATACTGAAGgcgtattttc
aaatttctcatggCAATCAGAAGTGATGCCTCAAAATTTGCGTCGCATTT
TGGATGATGGATCGAGTTTAGCACTTCGTCGCATTTTACTTTATTCGAAT
TCTGGAGGTAAAAGTTAgtttcaatccagcgtttgtaTGAAAACTATGCA
TGTCGCGGAACTAAAGTAGGAGGGAGAAATGAGTTGCTTGAAGAAttaca
taccttatcgggggaaaaaatgtcgggggaaggtgacgaaattagtgctt
taaacgtcgaattacaagatcttttttcgagctagtgaaggagaCCATTT
CGGTAGGACAATTTAGTTgagtgaaagtgactaaattgtaaatttcgtcg
gggaaaagtaacgaaaatgcctctaggtgacgaaatttttccccgacgaa
aaataaaacccgactaaataaaactccgacattttgtTCCGCGATAAGGT
AGTAGATTCGCCTATAGCCTTCGACCTTGTTGAGCTATACCAACTAATCA
GTCGACTAAGGAAACAGAGTTTTCAATAAGAGCCCATTGTTCCTTTAACA
ATAGCAGATCTGGCATGCAATGAACCGCAAATCAAAGACAAGCAGACTCT
TATTCTCAAGATTTCGTATCGTTATAACCTGTTCGCTTGTGTGTTTTAGG
TGGCGGTTGGACAATGATTCAACACCGATTAAACGGTGACATTGATTTCA
ATCGAAGTTGGCAATCATACAAAGAAGGCTTTGGCGATGTCAATGGTGAT
TTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGTGTTGTTGAACAA
CTCTTTGATTCGAATTCAAGGTGAAAGTTTTAACGGAGATCGAAGATTTA
TCATTGCAAAGGTAAAATAATTGGTTATTTGCATTCTTACTTATTCTGGC
GTTTTATTTCTAAGTATTCGACTGATTCTTAACGTTTAAAATGTCATCAG
AAGTATTTCNATTCTTACTTATTCTGGCGTTTTATTTCTAAGTATTCGAC
TGATTCTTAACGTTTAAAATGTCATCAGAAAGATTTTTTCCGTTTAATGA
ATAGGGATTCTGCATCGAAGACGAACAAAAGAAATACAAATTGCATTCTG
GGACAATGATCAATGATGAATGGAATATCGGAGGTGATTGGACATATCAT
GATGGTTTAAAGTTCACAACACGGGATGACGATAACGATTCAAAGGAGCA
TAACTGCGCTGATGAACACAGTAGTGGCTGGTGGTATAAAGGTTGTTATG
CAATAAATGCTAATAAAGCACCAGCAAAACAACAGCAAACAACATATGCA
GGTGGTATGAGCTGGCCCGCCTGGCTGGGCAGTCACTCTCAATCATTGAA
AGCAATGAATATGGCAATAAAGAAAATGACCTAATCAAAAGCCTCCTTTT
TAATAACAACAATTTAATTAGATTAATTTGACCGAAATTTAATCAATGAG
CCTCatttaatcaaaaaaaatacgtaagtaatagttatcgcacaGTACCG
AATACAATATGGGATATGTTTTTCTCGTTTAGAGTTTTCTATAATTAcct
tagcgagcacctcactaaaaaccgggattttctatttcgttaattgcgta
aaaaaacgcgggtgacgtttAGTATAGGCTATAATTACCTCGCCTATATC
TAATATTGTACCGGTTAAAGTATGATGTCTGGTTTATCGTCGACTTGAAA
AATAGCtatctttttctctattttgtttttctcttcttggttttctctct
ctctattttgataaaatctacATCAACACATTCGAAAAAAACATTTCTGA
TAAGTTGTTGTGTATTGCAAgcgaaaagaaaatttctaaccataaaattg
taaaatctaCGATAtctcgcttaccagaccccGTTTTTGAACCCAGCCTT
GTAATTTTATATAGGATATGCCCCctgtcataattgtcacaattgagtgc
attttcaagcaatctagagctcaaattttcaaaattcccccctcgggcca
atcCGGTTGGCCCTCGcagtgtcactaaacttcagccccaaTATGGAAAt
acttcctacggcactgcttTGAGTGAAAAGATATCGTAATAAAAAAGTAA
TACCCTGTTTCAAAGTTgattgtacacgcttttttttttataagaataca
ctttataagaatgtccatgatgaaaatggccaaaaaattaagaatatgct
aagaatatcaccatcatggaattttgagacgtatgtactaaatgttaagt
ctagtctgaattaggatcctaacctaagaatactgtaaggatatttcagg
atgattttcccaaaaaagttaagaatatccatgatgaaatggatttacac
cattcttataaaaaaaaaagcgtgtaagggGCTTATTACAAGccttttaa
aatgcttttaaaaatccgcaaagaaattgaaaaaatgaaaacgaaatACA
GAAGAattgatcaaaaatttccaaattaaacTTCCCTGAGAGTGGGACCT
TAACAGATTTCAAATAATCTATTCAGAATTTGCTAAATCTTGGTTAAATA
TTCGGGCGATAGGTCCAGTtcaaacattttaagcctaattttcAGAGAAA
ACTTGAGAAACGGAATTCTTTCGCGACAGACTTCAAGAAAATACTGGTTT
taaagtttctttctttttattatataagttcattagttttttagttttat
cagattatttaaaaaaacggAGCGATACCGATCAAAGATATAAAGAAAAT
ATGTAGCTAAAAAAGATGACATAATGGTCTCTAAAAACCTGTATTTCaac
ttaaaattttcacatAATTTATATAGCACAAACGTAAAGCTTACACTAGA
GCCCATCCATATTTCATTGGGCAAACACCTTTGTAGTTAGTAACAAATAT
TGTTAACACGTTATTGTTATTCTGTAACTGTAAGCATACTCTTTTTATTg
taaaagaaatttataaaaagagGATAATGGCTTACATTAGCGCAAACAAC
AAAGAGCAGTCTGAAGATAATACAGAATaatgttcgaactcgatactttt
ttccggacacccggTCATTTGCCCTTAAGGGTGTTTATTTCAGCTAATGG
ATTTCTTTTGCTGTTGTTCAAAataatctgcataattagcgggATTCGGA
TTTCCTAGCAATTCCaatgatataaccgcatcacgACCGCATCGTTAGAT
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068209-exon-scaffold_480-1491911889:40797..41287 | TCONS_00068209-exon-scaffold_480-1491911889:40797..41287 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1510915933:40797..41287 | TCONS_00068209-exon-scaffold_480-1510915933:40797..41287 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1575043694:40797..41287 | TCONS_00068209-exon-scaffold_480-1575043694:40797..41287 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1491911889:42046..42257 | TCONS_00068209-exon-scaffold_480-1491911889:42046..42257 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1510915933:42046..42257 | TCONS_00068209-exon-scaffold_480-1510915933:42046..42257 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1575043694:42046..42257 | TCONS_00068209-exon-scaffold_480-1575043694:42046..42257 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1491911889:42451..44599 | TCONS_00068209-exon-scaffold_480-1491911889:42451..44599 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1510915933:42451..44599 | TCONS_00068209-exon-scaffold_480-1510915933:42451..44599 | Clytia hemisphaerica | exon |
| TCONS_00068209-exon-scaffold_480-1575043694:42451..44599 | TCONS_00068209-exon-scaffold_480-1575043694:42451..44599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:40797..44599 + |
Blast
BLAST of TCONS_00068209 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 6.959e-35 Identity = 79/218 (36.24%), Postives = 117/218 (53.67%), Query Frame = 2
Query: 380 STTARSCLEWLERGFTLDGVYKI-LPVGEEKEVYCDMT--GGGWTMIQHRLNGDIDFNRSWQSYKEGFGDVNGDFWIGLETIREMSVLLNNSLIRIQGESFNGDRRFIIAKGFCIEDEQKKYKLHSGTMINDEWNIGGDWTYHDGLKFTTRDDDNDSKEHNCADEHSSGWWYKGCYAINANKAPAKQQQTTYAGGMSWPAWLGSHSQSLKAMNMAIKK 1024
+T R+C + L+RG+ L G + I LP V CDM GGGWT+ Q R++G +DF R W +YK+GFG G+FW+G + I ++ +S +R+ F G+ +F K F + DE +KYKL G + + G T H+ F+T+D DND NCA++ WWY C+A N N +YA G++W A G + S K M ++
Sbjct: 112 ATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTA-QGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGG--SAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKG-YKYSYKVSEMKVRP 325
The following BLAST results are available for this feature:
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