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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068222 ID=TCONS_00068222|Name=TCONS_00068222|organism=Clytia hemisphaerica|type=transcript|length=2326bpRun BLAST on NCBI protein sequence of TCONS_00068222-protein >TCONS_00068222-protein ID=TCONS_00068222-protein|Name=TCONS_00068222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp MAAASGKISSDLIQQYVNITGSDEESALHLLEAFNGDLESAVNMYLEGGGRun BLAST on NCBI transcript from alignment at scaffold_480:12563..79105- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068222 ID=TCONS_00068222|Name=TCONS_00068222|organism=Clytia hemisphaerica|type=transcript|length=66543bp|location=Sequence derived from alignment at scaffold_480:12563..79105- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_480:12563..79105- >TCONS_00068222 ID=TCONS_00068222|Name=TCONS_00068222|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_480:12563..79105- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068222 vs. Swiss-Prot (Human)
Match: UBXN7 (UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2) HSP 1 Score: 280.026 bits (715), Expect = 1.789e-84 Identity = 187/545 (34.31%), Postives = 288/545 (52.84%), Query Frame = 3
Query: 183 MAAASGKISSD----LIQQYVNITGSDEESALHLLEAFNGDLESAVNMYLEGGGQLPPKNRDSIIKXXXXXXXXXXXXXDDAIVVDDELNKPSSSNSGMDDEVRAPIPQKQAVLVEDEYHALPYPQRRQRSAARNAFDGFRDFKKEAEEHEKLLQQGVQPARNARKRQRLHELFRPPVDIIHVGNFQSARNSCTAKCKWLLVNIQNAMEFPCQILNRDVWSNKVVREVLKENFVLWQVHNDTDEGQHYATFYQIHNYPHLAIIDPRTGERMVVWENLGSNPSANQFAELATMFLAENPPFTNDMNSSTISIEXXXXXXXXXXXXRKNKPDALIDKSEDAQLEAAIKASLEMCNKQPKLVAIDDDEEEGSIVTVXXXXXXXXXXXXXXXXXXVEN---------DEIPSNK---KRKINEAPGTLSDKTSVKTTKGCYEKPNVEITEEKPPTTKAATHTQNILDDPTKEKVKILLRTPTNERKQILIYHEATLEDLAREVSKLGWSSSRYELIKSFPRQNLSSLDQTTTLEKAGLHKQETIFIQDR 1769
MAA G +S LIQQ+ ITG+ E H+LEA N +LE AV M+L+GGG +P + ++EVRAPIPQKQ +LVE E P+RR+ AR+ FDGFRDF+ E E+ L+ G +K L +LFRPP+D++H G+F++A+ + KWL++NIQN +F CQ LNRDVWSN+ V+ +++E+F+ WQV++D++EGQ Y FY++ ++P+++I+DPRTG+++V W L + F + T FL E+ + ++SS + + ++LID SED+QLEAAI+ASL+ + D +E S + E I + ++ VEN ++ K +R + E P +D + +G P V+ + P KA + I D K +++LR P +R+QI + +A L L + V G+ + R+EL+ +FPR+ LS LD TL++AGL QET+F+Q+R
Sbjct: 1 MAAHGGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG---------------------IAEEPSTSSASVSTVRPHT-----EEEVRAPIPQKQEILVEPE-PLFGAPKRRR--PARSIFDGFRDFQTETIRQEQELRNG---GAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQL----DVSSFLDQVTGFLGEHGQL-DGLSSSP--------------PKKCARSESLIDASEDSQLEAAIRASLQETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPHKDLGHRKEENRRPLTEPP-VRTDPGTATNHQGL---PAVDSEILEMPPEKADGVVEGI--DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 488 The following BLAST results are available for this feature:
BLAST of TCONS_00068222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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