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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068229 ID=TCONS_00068229|Name=TCONS_00068229|organism=Clytia hemisphaerica|type=transcript|length=925bp
atttttagctatcaaaagagaaggccccttttgctctaaatagccttaat
ttagcctatatttactcccgtttatttggaacctaagagtactaaTCTGA
AAATAAAGTTGTTTTGAAAGTATCAATTTCCAGGATGTTTTTAAACCAAA
TTACTTTTCAATTCCAAGATAACAAAATAAAGATTCTGgaagattttgct
tgattatTTCTTCCTCACTGAACGAGGTCAAAACAGCAAGACGAGCTAAT
TGTTTCAGAGTTAAGCCATCATTTGGGAATGTGAttttgtgaactttgaa
caaaTATTCATTTTTAACATTCTCGTAGTTGCTGATTGTGAAGCAAGTAT
AAACCAATTCTTTCTTATTCCAATTCAAGTAAAATATCAGGAAGTCTTCT
GGAGGATGTAAATTAATCTCATTTGAAATCTGTTTCGCATCTACATCAAC
AAGCGAAAATCCCGATGGGTATGGATCTGGGTTGTAAAGTACTGGCATTA
AAAGATGCCCAAAAACACAAATATGATTGCTTAGAAATAgacaattatta
ttatttattccAAAACCCTTATATAGATAGATTTCGCTACTAGATCCAAT
CTGACCATCTTTAAGGCTCTGAATACGAAATCTACCAGGTTTTGTGCTGT
AAATGATTGATTCTCTGATTTCCAGTAAAGAATCATGTAGACAATCATCC
AATGACAGGGGTATTCCATATTCAAATAACAATTTCCCATTGAGATCAAA
CTCGAATACTTTATAAATTACTTCATTTTCTTGAAAGCTTTTAGTATGAA
AGTAAAGCTTTTGCTTAGAGTAAGTTATATTTAGTCGTTCAATTGTAATG
GTAGACAATATCTCCAAATTGCATCTTACTCTCTCATAATGAACTAATTG
AGTTCTATCAATGAGCAAAACATCG Run BLAST on NCBI protein sequence of TCONS_00068229-protein >TCONS_00068229-protein ID=TCONS_00068229-protein|Name=TCONS_00068229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
DVLLIDRTQLVHYERVRCNLEILSTITIERLNITYSKQKLYFHTKSFQEN
EVIYKVFEFDLNGKLLFEYGIPLSLDDCLHDSLLEIRESIIYSTKPGRFR
IQSLKDGQIGSSSEIYLYKGFGINNNNCLFLSNHICVFGHLLMPVLYNPD
PYPSGFSLVDVDAKQISNEINLHPPEDFLIFYLNWNKKELVYTCFTISNY
ENVKNEYLFKVHKITFPNDGLTLKQLARLAVLTSFSEEEIIKQNLPESLF
CYLGIEK Run BLAST on NCBI transcript from alignment at scaffold_480:99280..100204 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068229 ID=TCONS_00068229|Name=TCONS_00068229|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at scaffold_480:99280..100204 (Clytia hemisphaerica)
CGATGTTTTGCTCATTGATAGAACTCAATTAGTTCATTATGAGAGAGTAA
GATGCAATTTGGAGATATTGTCTACCATTACAATTGAACGACTAAATATA
ACTTACTCTAAGCAAAAGCTTTACTTTCATACTAAAAGCTTTCAAGAAAA
TGAAGTAATTTATAAAGTATTCGAGTTTGATCTCAATGGGAAATTGTTAT
TTGAATATGGAATACCCCTGTCATTGGATGATTGTCTACATGATTCTTTA
CTGGAAATCAGAGAATCAATCATTTACAGCACAAAACCTGGTAGATTTCG
TATTCAGAGCCTTAAAGATGGTCAGATTGGATCTAGTAGCGAAATCTATC
TATATAAGGGTTTTggaataaataataataattgtcTATTTCTAAGCAAT
CATATTTGTGTTTTTGGGCATCTTTTAATGCCAGTACTTTACAACCCAGA
TCCATACCCATCGGGATTTTCGCTTGTTGATGTAGATGCGAAACAGATTT
CAAATGAGATTAATTTACATCCTCCAGAAGACTTCCTGATATTTTACTTG
AATTGGAATAAGAAAGAATTGGTTTATACTTGCTTCACAATCAGCAACTA
CGAGAATGTTAAAAATGAATAtttgttcaaagttcacaaaaTCACATTCC
CAAATGATGGCTTAACTCTGAAACAATTAGCTCGTCTTGCTGTTTTGACC
TCGTTCAGTGAGGAAGAAataatcaagcaaaatcttcCAGAATCTTTATT
TTGTTATCTTGGAATTGAAAAGTAATTTGGTTTAAAAACATCCTGGAAAT
TGATACTTTCAAAACAACTTTATTTTCAGAttagtactcttaggttccaa
ataaacgggagtaaatataggctaaattaaggctatttagagcaaaaggg
gccttctcttttgatagctaaaaat Coding sequence (CDS) from alignment at scaffold_480:99280..100204 >TCONS_00068229 ID=TCONS_00068229|Name=TCONS_00068229|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_480:99280..100204 (Clytia hemisphaerica)
GATGTTTTGCTCATTGATAGAACTCAATTAGTTCATTATGAGAGAGTAAG
ATGCAATTTGGAGATATTGTCTACCATTACAATTGAACGACTAAATATAA
CTTACTCTAAGCAAAAGCTTTACTTTCATACTAAAAGCTTTCAAGAAAAT
GAAGTAATTTATAAAGTATTCGAGTTTGATCTCAATGGGAAATTGTTATT
TGAATATGGAATACCCCTGTCATTGGATGATTGTCTACATGATTCTTTAC
TGGAAATCAGAGAATCAATCATTTACAGCACAAAACCTGGTAGATTTCGT
ATTCAGAGCCTTAAAGATGGTCAGATTGGATCTAGTAGCGAAATCTATCT
ATATAAGGGTTTTggaataaataataataattgtcTATTTCTAAGCAATC
ATATTTGTGTTTTTGGGCATCTTTTAATGCCAGTACTTTACAACCCAGAT
CCATACCCATCGGGATTTTCGCTTGTTGATGTAGATGCGAAACAGATTTC
AAATGAGATTAATTTACATCCTCCAGAAGACTTCCTGATATTTTACTTGA
ATTGGAATAAGAAAGAATTGGTTTATACTTGCTTCACAATCAGCAACTAC
GAGAATGTTAAAAATGAATAtttgttcaaagttcacaaaaTCACATTCCC
AAATGATGGCTTAACTCTGAAACAATTAGCTCGTCTTGCTGTTTTGACCT
CGTTCAGTGAGGAAGAAataatcaagcaaaatcttcCAGAATCTTTATTT
TGTTATCTTGGAATTGAAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068229-exon-scaffold_480-1491911889:99280..100204 | TCONS_00068229-exon-scaffold_480-1491911889:99280..100204 | Clytia hemisphaerica | exon |
| TCONS_00068229-exon-scaffold_480-1510915933:99280..100204 | TCONS_00068229-exon-scaffold_480-1510915933:99280..100204 | Clytia hemisphaerica | exon |
| TCONS_00068229-exon-scaffold_480-1575043694:99280..100204 | TCONS_00068229-exon-scaffold_480-1575043694:99280..100204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:99280..100204 . |
Blast
The following BLAST results are available for this feature:
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