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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068248 ID=TCONS_00068248|Name=TCONS_00068248|organism=Clytia hemisphaerica|type=transcript|length=1806bpRun BLAST on NCBI transcript from alignment at scaffold_482:53604..64027+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068248 ID=TCONS_00068248|Name=TCONS_00068248|organism=Clytia hemisphaerica|type=transcript|length=10424bp|location=Sequence derived from alignment at scaffold_482:53604..64027+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068248 vs. Swiss-Prot (Human)
Match: LR74A (Leucine-rich repeat-containing protein 74A OS=Homo sapiens GN=LRRC74A PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 1.081e-49 Identity = 125/378 (33.07%), Postives = 208/378 (55.03%), Query Frame = 3
Query: 501 ATGKKT-YFELCKRLDSTPVSYFLKHMADPEINLAYHXXXXXXXXXXXXXXXXXXXXXXXXXXENSIGFEGTRAISDMLRENCYITDLNLSSNYLGPEGCNNVCDMLQQNLN-LRKLDLSKNRFGDSVGNILAEAFKNNFKLSHLDLSSNDLGEKAGIALGPGVNANDAMEYLNLSWNQLNRKATVEIAHGLRANCTLKVLDLSWNGFSDFGAVALADALKANNTLTELNICNNRIHDDGAVALAKALDFNNTLEILKLNGNPLTEKGALLLLNSINNKSDSAIHELHIMGVFIQDEFLKL-----------------YKQLRENKEVIVLADFRDLTPLEKIQRFIKENKDTWLEGFHSIDEGLVYRVPIPDFFDIL 1577
TG+K Y E CK + PVSYF+++M + +NL +HG+G +G KA+A ALV N + L +N I EG ++ +ML+EN Y+ ++N+S+N+LG EG + D ++N + + L+LS N F + +L +A N+++ LDLS N + G LG + N + L+LSWN + + V + +GLR N TL LDLS NGF + A+AL + L+ N L L+I N I ++GA ++K L+ N +L +LKL NP+ GA+LL+ +I S + EL I V + ++F+K + L K + +L + P++ IQ + ++K T ++ F S++ ++ + +F ++
Sbjct: 79 TTGQKELYLEACKLMGVVPVSYFIRNMEESYVNLNHHGLGPRGTKAIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISNNHLGLEGARIISDFFERNSSSIWSLELSGNDFKEDSAALLCQALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESNESLRVLKLFLNPINMDGAILLILAIKRNPKSRMEELDISNVLVSEQFMKTLDGVYAVHPQLDVVFKAVQGLSPKKTIFLLTN-----PMKLIQSYADQHKITIVDFFKSLNPTGTMKMSVDEFQKVM 451 The following BLAST results are available for this feature:
BLAST of TCONS_00068248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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