TCONS_00068255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068255
Unique NameTCONS_00068255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068255 ID=TCONS_00068255|Name=TCONS_00068255|organism=Clytia hemisphaerica|type=transcript|length=3636bp
TAAACAAATACAAAACAGATAAAACTACAAGTCGAAACTTAAAGAATGCC
AACAATACTATTGTGTCATATGTtgacaaatatcaaaataaaacatgtcT
GTACAAATTTACGTATGAAACACAAGCGAAATCAGATgactgtaaaaaaa
aacaagatattTTTATAGTTATTGAGATCATATTTATGTCATCATCAGTA
TTGCGGTAGTTCAGTGTTGTTGTTATTTAACGAGAGCAGCTTCGATACAA
AATTTTACAGAGGGAAACATTTTTTCTGATCTCTATGGACGCTGACAAAA
AAGCACCACCAcctaaagaaatttttgagaatGGTGGAGAAGAAGTGTTC
GATGATCCGGATGGtattttgaagaagaagaagaagaacaagAATAAAGT
AGCTCCTTCTTCACAAACTGTAAGATCGTCTGCCACAATCAACATTATAC
GAACTCTCAAGGATGTTGTGACAAGTGAAGATGAAAAGGGAATGGCAATG
AAGAGAGTATTGGAACTAGAGAAAGAACTTCTGGACATGCGCAGTTCGAA
GaatgaaagtgaagaagaagtGAAAGGGTTGAAATATGAATTGGGTGGTc
ttcaaaagaatttcaaagagTTGAAAGATTCATCAGCAGCATCTCTGGAA
GAACTGGAAAAATTCGAAGTCACACGACTTTCAGATGAAAACGAGGctct
aaagaaagaaaatactgACCTGATGAAACAAGTGGAGAACTCCATGACGC
AACAAATTGCAGACCAGAAAGAATGCGAACTCTTGAAAACTGATCTAAAA
AACAAAACTGAAGAAATGAAAGTGTTGAAATTACAagttgatgaaatgaa
aagtcAACTTCTCAATTCTATATCCAGTAATAATGAGTCGCTTCAGGTCA
TTGAGGAAGCGAAgaaagaaataaagcaaatgaCTGAGAGCATGAAACAG
AAAGAAGAAACGCTCAAACAACAAATTACTCAACTTGAAAATGATTACAA
AGCAAAAGAAGACAAAATTAACAACGAAAAAGATTCCCTTCTAAAAGAGC
TAAATGAAGAACgagagaaagtgaaagtgaacaACAGTGAAATCAAAGTG
TTGAAGAACGGAATCGAAAAACTGATCAAAGAGAAGACTGACGAAAAATC
TTTCAGAATCAAAATAGCAGAGCGTTTAAAAATGATTATTGAAGAGAAAA
ATACTATGGAAGGTGCTTACAAACTCGACCTGCAACAAGTGTCACGCGAT
TTTGAAGACCTCAAAAAACACTTCGTTCACGTTACAAGCGACAAAGcaga
aatgtttcaaaaattaagCGACGCTGTGTTCGAGAAATGCAAGAAACAAC
GCTGGGTACCTGACATTGAATCAGAAAATTGTACAAATTGTTGTGAAAAA
TTCTCTTTCACTCTCAGGAGGcacCACTGTCGAATGTGTGGTCACATCTT
TTGTTTCAAATGTTCCGATCGATGGTTGCTTACTCCACACAGTAGCAAGA
GAGTTCGTGCTTGTGATGTCTGTGCGGACACGTACACAGAACAACATTTG
GATGCTGAACCAGGGCGTGATATAGATATGACTGACGCCCCTCCACAACA
AATGTATAGAGAATTGAGAGGTGAAGAAATCACAAAGTATGAAAAGGAGT
ACCAAGAGGACGAAGATGCAGAAGACGATGGTGGACCTGGTGAAACTTCT
CGTTTGCTGGAGAAAGGAAAATGAGAATAGATCAAACAGAAACGAATTAG
ATCAGATCTACGTAACCTTCCTTCATCATCGTCCTCCAAAAAGAAGCTGA
TTTCGTCATAACTCTGTCCCatattacacccccttctcacagacccggta
ttcaaccagtggggataaaaataacagactgaaaATCGATGGGGGttgat
attctcatatttttcatggctgggaatttcaattcttttcttttcaagtc
AATAAAATTCAGCAGGGATGGGAAAAAATAGTaagtattttgcagtgagg
attggtttaattgattattttcagcgaggACAAAGGCTGGAGGATGATTT
TCCACTGCGGGGAccatattttggccaatttttccagtgggaaggatttc
cagtggggctgtgagaaGGGATACATATAGGGATATTACACATAAAAATG
CATACAATTTTATTCCACATATTATATTAAAACGAAAAATATATTCTGGT
AACGTATACCATGTTTTTAAcgaattaaaattttttgattgctGTAAATA
AGAATTTCCAATTTATTCTTAGAattcatttctttattttctatcagaat
ttatactttttataacacacattaatttctttaataaagAAACAAGCTAA
GGCTAACGCAACATAAATTATATCATTCCTTTTTCCCAGCGGTGTGTAAG
CGAGCGTGTTACCCCAATGACAATGTCTATACTACTTTGAGACAACAAGT
TTATAAataacaaaaacattcaaacccaacaaaaatttataaaaatacaa
aataaaaattattgttCATTTAACCTATATTTCTTGTCTCTTTCGTTGCC
ATTTTAGAAATAGAACTTTAGTCATCAATTCCGACTACTCTTTCCAATTG
TATAACCTTCAAGTTGGAAAATCAATTTTGGGTTCTTTTGTCTAATGGAA
GTCTTGATACTTCTCCGCCatttaatttcaattctttATCCATATTCCAG
AATACAACAGTTCATTTCATAGACTTGCTTCTTCTGAATTGTTCGAAGAT
CTGTCTTTTCTTTCTCTTCCCATCCTCCCAGACTTCTTGGTGAGATTTCT
GAGCAAACAGAACTTCAAATTCATCATCTCGACTACCAGTGGCTGTAGTG
GTTACGATTGCTTTATGGTGATCAAAACCATTGGTGAACTGGTAATCTCT
GGAAGATTGATGGCCACCAGAGACTGCTCCTCCATAACTTACCACAGCAT
TTGATCCAGGGTATGTATTATAGGATGACTGGTACATCGAATTCCCTGCA
TATGCACCGTTTCGATGATTCTGGTTGTTCCCAAATTGCCAGGGTTCAAT
ATTGACCACATCCGAGGTTGTACCAACACACCTGTTAGCATACTGCTTTA
CCATCCGTTTCGCTTCCTCCTTCTTCAACTCGATAAACTTAGACAACTCT
TGAGACATTGTCCAATGGATCTGTTCAGTATCGGTAGATATTGGATATAC
ATGCCGTTTCTTCAGAATAGGTTCTTCGAAGATGCATCGGTTCATATCAT
GCCAGAGTTGTTCAAATTCGATTCCTGTTTTACATCTTACCATTCGCATC
ATGAGGTTTTGGAACTCTTTGGCAGATCTGATATGTTTGTGTTTTCTCTC
AGCTGGTTGTAACACAGCGTACAGACAAACTAGGAATGTTAGCGTTGCCA
CTAACCCAGCAATGATGAATATAGTCACCGTTTGTAGTAATGCCAACAGA
GTTGCAACAGCTCCAAAGATTGCCATAGCTGACAGAaggattttattgat
tttgttcCAGTAGCGTGATGCCCACATATGACTTTTGTATTTGGCTTCGG
TCTTCTGGATGAAGGTTTTCCATTTCTTGGTCATCTCCTTGAGGACTTCT
TGGCCAATCTTCTTGAGCTCAATATCTTTATCCGTC
Run BLAST on NCBI

protein sequence of TCONS_00068255-protein

>TCONS_00068255-protein ID=TCONS_00068255-protein|Name=TCONS_00068255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MDADKKAPPPKEIFENGGEEVFDDPDGILKKKKKNKNKVAPSSQTVRSSA
TINIIRTLKDVVTSEDEKGMAMKRVLELEKELLDMRSSKNESEEEVKGLK
YELGGLQKNFKELKDSSAASLEELEKFEVTRLSDENEALKKENTDLMKQV
ENSMTQQIADQKECELLKTDLKNKTEEMKVLKLQVDEMKSQLLNSISSNN
ESLQVIEEAKKEIKQMTESMKQKEETLKQQITQLENDYKAKEDKINNEKD
SLLKELNEEREKVKVNNSEIKVLKNGIEKLIKEKTDEKSFRIKIAERLKM
IIEEKNTMEGAYKLDLQQVSRDFEDLKKHFVHVTSDKAEMFQKLSDAVFE
KCKKQRWVPDIESENCTNCCEKFSFTLRRHHCRMCGHIFCFKCSDRWLLT
PHSSKRVRACDVCADTYTEQHLDAEPGRDIDMTDAPPQQMYRELRGEEIT
KYEKEYQEDEDAEDDGGPGETSRLLEKGK
Run BLAST on NCBI

transcript from alignment at scaffold_482:210956..220878+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068255 ID=TCONS_00068255|Name=TCONS_00068255|organism=Clytia hemisphaerica|type=transcript|length=9923bp|location=Sequence derived from alignment at scaffold_482:210956..220878+ (Clytia hemisphaerica)
TAAACAAATACAAAACAGATAAAACTACAAGTCGAAACTTAAAGAATGCC
AACAATACTATTGTGTCATATGTtgacaaatatcaaaataaaacatgtcT
GTACAAATTTACGTATGAAACACAAGCGAAATCAGATgactgtaaaaaaa
aacaagatattTTTATAGTTATTGAGATCATATTTATGTCATCATCAGTA
TTGCGGTAGTTCAGTGTTGTTGTTATTTAACGAGAGCAGCTTCGATACAA
AATTTTACAGAGGGAAACATTTTTTCTGATCTCTATGGACGCTGACAAAA
AAGCACCACCAcctaaagaaatttttgagaatGGTGGAGAAGAAGGTATT
TTACGGACCAGTTTTTTGATACACTTTATTCACTTAAAATTCCAGATTAT
TGCTTATAGTTAGTTTATACAAATTGTCCCTGTCACCAGATACATCTTGA
TGTTTAAGCGTTTTAGGAATCTCTGCAACAGAAATTCTTATGTGATGtca
tgttgttgtttttcttctttcttctactTTCGTTCTGTAAGTAAACTATA
TTCCTTCTTAGATTTCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGGGgggggtaaaacctattgtccggggggccaaaa
gtcaccctgtccggggggtaaatcactaaaaattgttatatcctccaccc
cccccccatgtaaaatttttttctggaagagcccaatttatatttttctg
aaaaaactgAAGACACGACTAGCTAGCATCACAAATAAAGCACCTTATAT
AACTCTCCTTAAAGTCTCTCCTTTAAAAACTTAGTTACATTTTCACAATT
TCTTACATTTTAGTGTTCGATGATCCGGATGGtattttgaagaagaagaa
gaagaacaagAATAAAGTAGCTCCTTCTTCACAAACTGTAAGATCGTCTG
CCACAATCAACATTATACGAACTCTCAAGGTTCGTCTGTCTCTGTCTTGT
GGTCCGTACGATGATCGCAATAAACCAGGGGTTTCGGATTCAGACCTCTG
CTCCTGTGTTCTCTTCAagaatgctttttttataagaacaacaacaagcc
ttttaaggcaaaaaatgttttaacctcttcttattttcactattttgtgg
gtatttttatATGCAATTTCCttagaaatcaggtgttttacaGTCAGCTA
ATCCTTAAATTAATATTTTAGCAATCGAAGCCTtagttcttatataattt
gttcttataacagAAAACGTGTATACACGTAAACAATCACCCTTTTTGCC
ATATACTAAAcattatctttaaaaaattttccaaatttgaccatctttta
taataaattttatCTATACTCTAAGAGTCGTTTTTAAGTCACATCCAATG
CAAAAAGGGCTCAACATTTACATTTTTAATCTAGATAAAAAAGGAGCAGA
AAAATGTCCTGGTTATTATTGACGTCAGCAGCATTGTTTACTTTAGCTTC
AAATTCACAAAAACTCAGAGATCAGTCTATTTTGAAATTGTGATTGATCT
GGAAAATACTTTATAAAGTCATCACTTATTAGGCGAATAAACAAAATACA
CATGATTGTCACTGTGTACTtgaattgacttgaaatttcttGTCCGGAGA
AGTAATATGCAAATCATCTGTTTTTAcctttaaagttttaaaaattttgc
ctgGATGAGTGAAATGCAAAATTAATGTATTTTTTTGCAGGTATTCAATA
ACCATATTATCTTTTATTAAAGATTGACTTTGTGATTATCAAACTGCCCC
AAAAGTTTAATTCATAAAAGCCTTTGCTTTTATAGCGTCTAGCCAAGGAA
GTTAATGTATTTCTTTTTATCTCTTTATGAACAGGATGTTGTGACAAGTG
AAGATGAAAAGGGAATGGCAATGAAGGTAATTTTACCATCTTCTTCTGCT
TTGTGCATCTAAACATTTTCATCcaagaaaaaagaagattttgttttcat
tgaaagtttttcttaatCTAGGATTGGTTTCTTACTTACTTTCTCACTta
tacactcccttctcacagaaccgATGGGATTTTTCATGACACTGGGAAAA
ATCTCTATAGAGATCGATACTATAAATTCTTTCATGATTTTgcatttgaa
ttccattgttttcaagtcagaaatacgtatggaaaaaatagcacaatatt
ttgcagtgaggatttatttgtttatttgattgttttcagcAAGGACAAAA
ATATTATGgtaaatttttccagtgggaagaggTTCCACTGGGAcagtgag
aaaggggtgtcttatatacccctgtctcacagctggTGGAAATCCTTCCA
ACATTGGGGATGGAAATACACTTCTTTTCGTTGGATTTCAAATGGGGGAT
GAAGACAAAGTTGATTTGTCAGTGAGGCTGAAGTCTTGGGCTATTTTCTC
caacggggacgaaattttggtcaaatttttctGTGACTGGTTTTCATATC
TGATGACTTTATTTCTAGAGAGTATTGGAACTAGAGAAAGAACTTCTGGA
CATGCGCAGTTCGAAGaatgaaagtgaagaagaagtGAAAGGGTTGAAAT
ATGAATTGGGTGGTcttcaaaagaatttcaaagagTTGAAAGATTCATCA
GCAGCATCTCTGGAAGAACTGGAAAAAGTAGGTTTGTCTTTGAATTTGAA
TTCTACAATTTGGTATGACTGGACCTCTAAGAATTCCTTCCCCTCATGCC
AGTGAACTCGAACTTCACGCATTTAcgcaattttttcaaattcgctTTCA
CGCTAATTTATCTCGAGTTTCATACAAGctcgattttcaaaatatctgga
aatattttgggaaaaatcTGCAAATTCGCGAATGATGggtagaaaaaagg
gaaaattcacgtatttgTGCAAAAATAGTACAGATTCGctcattcacgca
aaccgctgccCCTCTCATATTTTTTAAGTTCTGATGACAACACGAGGCTT
TTAATGGAACTCTCAAATTTTCTGGTGATTGTACTCATTGTTATAATTAC
CTCTTTTTATTTACAGTTCGAAGTCACACGACTTTCAGATGAAAACGAGG
ctctaaagaaagaaaatactgACCTGATGAAACAAGTGGAGAACTCCATG
ACGCAACAAATTGCAGACCAGAAAGAATGCGAACTCTTGAAAACTGATCT
AAAAAACAAAACTGAAGAAATGAAAGTGTTGAAATTACAagttgatgaaa
tgaaaagtcAACTTCTCAATTCTATATCCAGTAATAATGAGTCGCTTCAG
GTGAGTATTTGACTACAGTGTATccagaaaaaaacaacttttagaGTGCC
TGATTTTAAAAACTGTTGTATGccttcattttatgttttttgtatTAAAA
CTGCAAATCACACTGCCTTTAAACTAACACTGAAACTTCTTAACCAATTA
AGTGCCACTCTGGAAAAGACTAGTATCTAATAAAAAGGTATTCGATGAAT
CAAGAGCAGGAAAGATTCTATACAATAgcacattttttctttataaacaa
ccAAGTCCCGAGTCTTCATATTAGCTGAACTTGTTTTACTCTCTCGCAAA
GTAAAAGCTTACCGTGACAGACAATAGCCCTTGACCCAAAATATATAATA
TCAGGGGAGGTGTCAAAGCAATTTCAAAATTAGCTAAAATACTAAGCAGC
CCAGCGCTGATCTAAAGAtagaatttgttttaaaaaaatgtgtaccttAG
TCCAAAGAGAATTCCTATGTAAATCCTCAGATACAAATTCCGCTTCGAAA
CTAGGTCATTGAGGAAGCGAAgaaagaaataaagcaaatgaCTGAGAGCA
TGAAACAGAAAGAAGAAACGCTCAAACAACAAATTACTCAACTTGAAAAT
GATTACAAAGCAAAAGAAGACAAAATTAACAACGAAAAAGATTCCCTTCT
AAAAGAGGTAGTGGTTGTTTTTATCGTTGCTGCTGTTCTAgcatggaaat
ttttcaaacattgatTAACGAAATTAATACTGATTTTTttaagttattta
tttttttgtagatAGGTATGGGTTTTTGGATTGTAAGTAGTTTCGAGcac
attgaaatattttcacaaTTCAATCACTGAGCCAATTATTACGAAACCTA
TTAAGAAACTGAACCTATTCTGAGGTCTCTTCCAAAATCTCTTAAAAACG
TTTCTACCTTATGCATGAAACCTTTAGAAAGattactttttgactttttt
aacccTCAGAGGGACTTTAGAAGGTTATAATCAACCATCATTGTTCGCAA
ATACCCAGAGCCcgtttttgcctaagtaacACCCCCAGGGTTGGTCTCTT
CAGAAGACTCTTCAAATATTCTACTTTACCACAATTGAATGCACCCCATA
CAAATCATGCTTTGCCACTCGTTCTCCTGTTAATATTGTGCAGAATTCGG
GTACTGGGACAGGGTTGTatgctttgaaatattttttctaatccatttag
aaatcgaaagtgaaaaaattcttgTAGAACTGTGCTTGCATGGATGACTG
TTTTATTATTAAGTAATTTCCAATCTTAGAACACtattactttaaaaaaa
ttcataaaatatttctttcactCCAAACACATAACTTTAGTGACTATGAA
AGGTGATTTTTCAGATTACATTAAGACAAAAATTTACACGAAACACGCTT
AGCTAGATACCACNTTTCAGATTACATTAAGACAAAAATTTACATGAAAC
ACGCTTAGCTAGATACCACAATCCAATACATACACACGCACGCCCTCcta
actttcattttcttcattttcaccaCAGCTAAATGAAGAACgagagaaag
tgaaagtgaacaACAGTGAAATCAAAGTGTTGAAGAACGGAATCGAAAAA
CTGATCAAAGAGAAGACTGACGAAAAATCTTTCAGAATCAAAGTATGTTT
TCAAAGAGCTGACAACAAAGAACTGATAATTCTTGTCATTCGTGCCTTTT
AGttgactctcgcttattcgagcACGTTAGCGAAAAATTTTTAATCGAAT
TGCAGagggattcgaattatagaaagtattctaCAAAGCTTTCCCTTGGT
CGGGACAGCTATTCAGTTCGAATTATTGAAAGATTTGAATGATAGAAGAT
CGAATTGGTGAATGTTCATTTTGACTACAAAAAGCTACGTCCTTGACACG
TTAGGGTGTTGAACTCTTAAACAAGTCTTTTAATCTAATGGTTGGTGCAA
AACCAACTCTTCATAGCCATGACAACTAAAAGACATATCTCAGAACCATT
CTATTTTACTCTTTCTACAGATAGCAGAGCGTTTAAAAATGATTATTGAA
GAGAAAAATACTATGGAAGGTGCTTACAAACTCGACCTGCAACAAGTGTC
ACGCGATTTTGAAGACCTCAAAAAACACTTCGTTCACGTTACAAGGTGAC
TAGCAAGCGGtcttattatttaaaaattgtgTTCACATTCCTGGTCTCGC
GTTTGAAGTAAGGCAGGCAAAACTTAAGGGGGaaatttaaagaagatttt
tttttcactagTTTGCGGAAATGTGCGGTGGCCATGCCTCCTTCTCCTCC
CTCATCGACGGGACCCACGATTCCAACAAACTATAATAAGTGCAACTTAA
GCCCTTCTTCAAAGAGGCAGGACTAATTTTTCGTCACCTTCAATCTTCTC
AAATGTAAATGATTAAACAACAACTCAACATTCGAATGCTAACCCACGTA
TTTAGATTAAATTCTACTTCTGCATTTGAGCAACTGGAAATGTTCCGAAC
TCATTCAAAATCATTTCATTAATTACTTAGCGACAAAGcagaaatgtttc
aaaaattaagCGACGCTGTGTTCGAGAAATGCAAGAAACAACGCTGGGTA
CCTGACATTGAATCAGAAAATTGTACAAATTGTTGTGAAAAATTCTCTTT
CACTCTCAGGAGGGTATGTTTCTCAATTGGAAGTTAAGGTGacattatcg
aataatagaatatCGAAAAGAAATTTGACTTTGGCTTTTAACTTGATCAA
AAATGAAGCTTTGTCTAACATAACATCAAATGAGAGTGTCATATACATTA
TCTCCCAGTAGAAGGCTTAGATCTCGTCAATCTCCTTATAACCACTCTTT
TTACAACACATTGTTTGTAAAATTGtgtctaaaaattttttttccagcac
CACTGTCGAATGTGTGGTCACATCTTTTGTTTCAAATGTTCCGATCGATG
GTTGCTTACTCCACACAGTAGGTAAGTCGAGAAGTAATGTTTTATGACCC
TGTCCTCCAGTGGAGTCCCTGATCACACCATCATGCCAAAAAAGTTCTAA
TCCACAGGATAacgctgaaaatattctttttttccCGCCATCATTCTTAG
AGTCTCAATCCCATATCACGCTTTTTAAACTCATAAACTACGCCATCGCG
CCAAAAGAAATGCCCAAATCACATCGCTATGCAAACAACCGGGGTCTTCT
GCAATCTAAGTAAAAAAGTGTGAGTAAATAAAAGCTGTTCCTTTTCACCG
ATGGCTGTCCATTTGCTCTCTTTACTTTTTGTCGATTGATCCGCGCTACT
ACAAGGAGTATGATGCAAACTTaatcatttcatttttctttttctcttct
gtTTAGCAAGAGAGTTCGTGCTTGTGATGTCTGTGCGGACACGTACACAG
AACAACATTTGGATGCTGAACCAGGGCGTGATATAGATATGACTGACGCC
CCTCCACAACAAATGTATGTATTCTTCATTGCTTTGCTAGAAACAAGCTT
ATTATGCCTAGATATAATGACATAggaataatcagatggtttgatgAAAC
AAAATGATTTTGGTGTTAAGAAATTTCATATATTTCAAATTACATTACAG
TATCTTGAGTTACTGATGGGGAATTTATGAAGGTGAAATTTGTCTAAATT
CATAAAGGATTGCTTAAAAAATCTCTTAACCTTTCGCCTTTTGGCCTAAA
AACCAACTAACTTTCCCCTATCTATTGTGATTGTAGGTATAGAGAATTGA
GAGGTGAAGAAATCACAAAGTATGAAAAGGAGTACCAAGAGGACGAAGAT
GCAGAAGACGATGGTGGACCTGGTAATTCTTTTTTTCGATATTTCTACAC
CCCTAGCCACCAGGGGCGTTCAATCTAAGAGCCTAAACAGTGGGGATCAA
TCGAATTTCTTTTggcaaaactttggaaaatctgaaaatcttttgccttt
tctttccctttttGACATAGGAAGATATGAAAGTGTTTTGCCTTAAAATG
GACAAAGACTCTCAAGAAAAGAGACCTAAATTAAAAGGCCTAAATTTTTC
CGCCTTCCTCATGACAATGCCTGTGGCATCACCAAAGAGCCAAACTTCAC
CTCCTGACCAAAGATGTAATGTCATGCaagttttggtaattttcaCAAAT
CGAAAGTGATATTTATCGCATTGATCCAGACTCGATTGTAAAATTATATT
ATGCTCATGTTTTTTTCATGCTATAGGTGAAACTTCTCGTTTGCTGGAGA
AAGGAAAATGAGAATAGATCAAACAGAAACGAATTAGATCAGATCTACGT
AACCTTCCTTCATCATCGTCCTCCAAAAAGAAGCTGATTTCGTCATAACT
CTGTCCCatattacacccccttctcacagacccggtattcaaccagtggg
gataaaaataacagactgaaaATCGATGGGGGttgatattctcatatttt
tcatggctgggaatttcaattcttttcttttcaagtcAATAAAATTCAGC
AGGGATGGGAAAAAATAGTaagtattttgcagtgaggattggtttaattg
attattttcagcgaggACAAAGGCTGGAGGATGATTTTCCACTGCGGGGA
ccatattttggccaatttttccagtgggaaggatttccagtggggctgtg
agaaGGGATACATATAGGGATATTACACATAAAAATGCATACAATTTTAT
TCCACATATTATATTAAAACGAAAAATATATTCTGGTAACGTATACCATG
TTTTTAAcgaattaaaattttttgattgctGTAAATAAGAATTTCCAATT
TATTCTTAGAattcatttctttattttctatcagaatttatactttttat
aacacacattaatttctttaataaagAAACAAGCTAAGGCTAACGCAACA
TAAATTATATCATTCCTTTTTCCCAGCGGTGTGTAAGCGAGCGTGTTACC
CCAATGACAATGTCTATACTACTTTGAGACAACAAGTTTATAAataacaa
aaacattcaaacccaacaaaaatttataaaaatacaaaataaaaattatt
gttCATTTAACCTATATTTCTTGTCTCTTTCGTTGCCATTTTAGAAATAG
AACTTTAGTCATCAATTCCGACTACTCTTTCCAATTGTATAACCTTCAAG
TTGGAAAATCAATTTTGGGTTCTTTTGTCTAATGGAAGTCTTGATACTTC
TCCGCCatttaatttcaattctttATCCATATTCCAGAATACAACAGTTC
ATTTCATAGACTTGCTTCTTCTGAATTGTTCGAAGATCTGTCTTTTCTTT
CTCTTCCCATCCTCCCAGACTTCTTGGTGAGATTTCTGAGCAAACAGAAC
TTCAAATTCATCATCTCGACTACCAGTGGCTGTAGTGGTTACGATTGCTT
TATGGTGATCAAAACCATTGGTGAACTGGTAATCTCTGGAAGATTGATGG
CCACCAGAGACTGCTCCTCCATAACTTACCACAGCATTTGATCCAGGGTA
TGTATTATAGGATGACTGGTACATCGAATTCCCTGCATATGCACCGTTTC
GATGATTCTGGTTGTTCCCAAATTGCCAGGGTTCAATATTGACCACATCC
GAGGTTGTACCAACACACCTGTTAGCATACTGCTTTACCATCCGTTTCGC
TTCCTCCTTCTTCAACTCGATAAACTTAGACAACTCTTGAGACATTGTCC
AATGGATCTGTTCAGTATCGGTAGATATTGGATATACATGCCGTTTCTTC
AGAATAGGTTCTTCGAAGATGCATCGGTTCATATCATGCCAGAGTTGTTC
AAATTCGATTCCTGTTTTACATCTTACCATTCGCATCATGAGGTTTTGGA
ACTCTTTGGCAGATCTGATATGTTTGTGTTTTCTCTCAGCTGGTTGTAAC
ACAGCGTACAGACAAACTAGGAATGTTAGCGTTGCCACTAACCCAGCAAT
GATGAATATAGTCACCGTTTGTAGTAATGCCAACAGAGTTGCAACAGCTC
CAAAGATTGCCATAGCTGACAGAaggattttattgattttgttcCAGTAG
CGTGATGCCCACATATGACTTTTGTATTTGGCTTCGGTCTTCTGGATGAA
GGTTTTCCATTTCTTGGTCATCTCCTTGAGGACTTCTTGGCCAATCTTCT
TGAGCTCAATATCTTTATCCGTC

Coding sequence (CDS) from alignment at scaffold_482:210956..220878+

>TCONS_00068255 ID=TCONS_00068255|Name=TCONS_00068255|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_482:210956..220878+ (Clytia hemisphaerica)
ATGGACGCTGACAAAAAAGCACCACCAcctaaagaaatttttgagaatGG
TGGAGAAGAAGTGTTCGATGATCCGGATGGtattttgaagaagaagaaga
agaacaagAATAAAGTAGCTCCTTCTTCACAAACTGTAAGATCGTCTGCC
ACAATCAACATTATACGAACTCTCAAGGATGTTGTGACAAGTGAAGATGA
AAAGGGAATGGCAATGAAGAGAGTATTGGAACTAGAGAAAGAACTTCTGG
ACATGCGCAGTTCGAAGaatgaaagtgaagaagaagtGAAAGGGTTGAAA
TATGAATTGGGTGGTcttcaaaagaatttcaaagagTTGAAAGATTCATC
AGCAGCATCTCTGGAAGAACTGGAAAAATTCGAAGTCACACGACTTTCAG
ATGAAAACGAGGctctaaagaaagaaaatactgACCTGATGAAACAAGTG
GAGAACTCCATGACGCAACAAATTGCAGACCAGAAAGAATGCGAACTCTT
GAAAACTGATCTAAAAAACAAAACTGAAGAAATGAAAGTGTTGAAATTAC
AagttgatgaaatgaaaagtcAACTTCTCAATTCTATATCCAGTAATAAT
GAGTCGCTTCAGGTCATTGAGGAAGCGAAgaaagaaataaagcaaatgaC
TGAGAGCATGAAACAGAAAGAAGAAACGCTCAAACAACAAATTACTCAAC
TTGAAAATGATTACAAAGCAAAAGAAGACAAAATTAACAACGAAAAAGAT
TCCCTTCTAAAAGAGCTAAATGAAGAACgagagaaagtgaaagtgaacaA
CAGTGAAATCAAAGTGTTGAAGAACGGAATCGAAAAACTGATCAAAGAGA
AGACTGACGAAAAATCTTTCAGAATCAAAATAGCAGAGCGTTTAAAAATG
ATTATTGAAGAGAAAAATACTATGGAAGGTGCTTACAAACTCGACCTGCA
ACAAGTGTCACGCGATTTTGAAGACCTCAAAAAACACTTCGTTCACGTTA
CAAGCGACAAAGcagaaatgtttcaaaaattaagCGACGCTGTGTTCGAG
AAATGCAAGAAACAACGCTGGGTACCTGACATTGAATCAGAAAATTGTAC
AAATTGTTGTGAAAAATTCTCTTTCACTCTCAGGAGGcacCACTGTCGAA
TGTGTGGTCACATCTTTTGTTTCAAATGTTCCGATCGATGGTTGCTTACT
CCACACAGTAGCAAGAGAGTTCGTGCTTGTGATGTCTGTGCGGACACGTA
CACAGAACAACATTTGGATGCTGAACCAGGGCGTGATATAGATATGACTG
ACGCCCCTCCACAACAAATGTATAGAGAATTGAGAGGTGAAGAAATCACA
AAGTATGAAAAGGAGTACCAAGAGGACGAAGATGCAGAAGACGATGGTGG
ACCTGGTGAAACTTCTCGTTTGCTGGAGAAAGGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042604XLOC_042604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068255-exon-scaffold_482-1491911889:210956..211300TCONS_00068255-exon-scaffold_482-1491911889:210956..211300Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:210956..211300TCONS_00068255-exon-scaffold_482-1510915933:210956..211300Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:210956..211300TCONS_00068255-exon-scaffold_482-1575043694:210956..211300Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:212269..212384TCONS_00068255-exon-scaffold_482-1491911889:212269..212384Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:212269..212384TCONS_00068255-exon-scaffold_482-1510915933:212269..212384Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:212269..212384TCONS_00068255-exon-scaffold_482-1575043694:212269..212384Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:213290..213331TCONS_00068255-exon-scaffold_482-1491911889:213290..213331Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:213290..213331TCONS_00068255-exon-scaffold_482-1510915933:213290..213331Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:213290..213331TCONS_00068255-exon-scaffold_482-1575043694:213290..213331Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:213924..214082TCONS_00068255-exon-scaffold_482-1491911889:213924..214082Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:213924..214082TCONS_00068255-exon-scaffold_482-1510915933:213924..214082Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:213924..214082TCONS_00068255-exon-scaffold_482-1575043694:213924..214082Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:214472..214705TCONS_00068255-exon-scaffold_482-1491911889:214472..214705Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:214472..214705TCONS_00068255-exon-scaffold_482-1510915933:214472..214705Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:214472..214705TCONS_00068255-exon-scaffold_482-1575043694:214472..214705Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:215210..215362TCONS_00068255-exon-scaffold_482-1491911889:215210..215362Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:215210..215362TCONS_00068255-exon-scaffold_482-1510915933:215210..215362Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:215210..215362TCONS_00068255-exon-scaffold_482-1575043694:215210..215362Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:216234..216347TCONS_00068255-exon-scaffold_482-1491911889:216234..216347Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:216234..216347TCONS_00068255-exon-scaffold_482-1510915933:216234..216347Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:216234..216347TCONS_00068255-exon-scaffold_482-1575043694:216234..216347Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:216726..216850TCONS_00068255-exon-scaffold_482-1491911889:216726..216850Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:216726..216850TCONS_00068255-exon-scaffold_482-1510915933:216726..216850Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:216726..216850TCONS_00068255-exon-scaffold_482-1575043694:216726..216850Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:217236..217368TCONS_00068255-exon-scaffold_482-1491911889:217236..217368Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:217236..217368TCONS_00068255-exon-scaffold_482-1510915933:217236..217368Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:217236..217368TCONS_00068255-exon-scaffold_482-1575043694:217236..217368Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:217603..217676TCONS_00068255-exon-scaffold_482-1491911889:217603..217676Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:217603..217676TCONS_00068255-exon-scaffold_482-1510915933:217603..217676Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:217603..217676TCONS_00068255-exon-scaffold_482-1575043694:217603..217676Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:218062..218169TCONS_00068255-exon-scaffold_482-1491911889:218062..218169Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:218062..218169TCONS_00068255-exon-scaffold_482-1510915933:218062..218169Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:218062..218169TCONS_00068255-exon-scaffold_482-1575043694:218062..218169Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:218442..218527TCONS_00068255-exon-scaffold_482-1491911889:218442..218527Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:218442..218527TCONS_00068255-exon-scaffold_482-1510915933:218442..218527Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:218442..218527TCONS_00068255-exon-scaffold_482-1575043694:218442..218527Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1491911889:218932..220878TCONS_00068255-exon-scaffold_482-1491911889:218932..220878Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1510915933:218932..220878TCONS_00068255-exon-scaffold_482-1510915933:218932..220878Clytia hemisphaericaexon
TCONS_00068255-exon-scaffold_482-1575043694:218932..220878TCONS_00068255-exon-scaffold_482-1575043694:218932..220878Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068255-proteinTCONS_00068255-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:210956..220878 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.56624	3.9915	4.31578	4.76561	0.675554	0.728847	0	0.527243	0.492361	0.310952	5.17386	0.669427	4.66597	2.62431	10.993	12.1576	2.00772	2.37716	5.80659	8.13045	0.720983	0.756128	1.8878	3.45305	3.3397	4.17612	0.762408	1.42416	12.4054	9.91624
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
IPR001841Znf_RING
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
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BLAST of TCONS_00068255 vs. Swiss-Prot (Human)
Match: EEA1 (Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.740e-18
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 3 
Query: 1350 RWVPDIESENCTNCCEKFSFTLRRHHCRMCGHIFCFKCSDRWLLTPHSSKRVRACDVC 1523
            +W  D E +NC  C + FS T+RRHHCR CG+IFC +CS +  LTP S K VR CD C
Sbjct: 1348 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC 1405
The following BLAST results are available for this feature:
BLAST of TCONS_00068255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EEA16.740e-1855.17Early endosome antigen 1 OS=Homo sapiens GN=EEA1 P... [more]
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