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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068261 ID=TCONS_00068261|Name=TCONS_00068261|organism=Clytia hemisphaerica|type=transcript|length=544bp
AACAGACTTCGGGAAGGAAATGACGTCAATCCAAAATGGTTGATTGGAAG
TTATGTATAAATTTAATCGATATTTATATTgattaatattttctttatct
ttcCTAAGCAGTCCGCAAAACACTTGTTTCAAGAACGGAAGattgttaca
aaaatattttcactaaaacaagAAGATAGGGAAAAAGACCAAgacagaaa
aagaagaaacgcaACCACCACaaaagTAACATGAAGACTTTGTGGGTAGC
AGTCCCACTATCATCTATCCTTTTTGGTTTGATCATAATGAACGATGACG
TCACCCACGCTAAAACAATCGACACATGTGGTTGTAAAGAGTTGTTAATG
CAATGTTTTGGCGTTGTCGAAAAAGCAGAAAGCCGAGTGAAAAATTGTCT
TGAAGCTCACAAAAAATGTCAAGCTTCTTGTCTGGATAAAGGAACTGAAA
GACGGCGAGAAATGAAATCCAGCCTTtgggaaaaagaaaaattatttgat
tCTTTTTGGAATGAGATTtaaagtttattttattttctataaat Run BLAST on NCBI transcript from alignment at scaffold_482:298661..300821+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068261 ID=TCONS_00068261|Name=TCONS_00068261|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_482:298661..300821+ (Clytia hemisphaerica)
AACAGACTTCGGGAAGGAAATGACGTCAATCCAAAATGGTTGATTGGAAG
TTATGTATAAATTTAATCGATATTTATATTgattaatattttctttatct
ttcCTAAGCAGTCCGCAAAACACTTGTTTCAAGAACGGAAGattgttaca
aaaatattttcactaaaacaagAAGATAGGGAAAAAGACCAAgacagaaa
aagaagaaacgcaACCACCACaaaagtatttttaatttttactaTACATA
CTCAACACAGAATGCTTTTAAATTTGAGTTGTAAATGGCTAAAGGAAGCA
GCCACTTTTTCAAACAGAATTCGGAATACCCTTGGTATTTGTGATCAATT
CCTTTCAGAAAGCAGGAGATCGGGTTAAATAGATCAGAGATCTGCATAGC
cggaaactttttttaaaagatatgaAAATTGAAACCTAGAATTCTGCCGA
GTTTAGGCTGAAAGAAAGATAATGTTCTGGATGGAGAAGAAACTAAACTT
TAATAAAACCATCATTTGAAAAGAGCTTATCTTGTGAACCGCTCCCAata
aaagtttcattttataTGCTGGTACTTGGGCGAGTGAAGGGAACGGTCAG
TCCCTCTCAGGTAAGTTATAGCATGTcctaaaattaccataatttttaaa
tcgcattagccgacagaaaacgaccaaacaaatgactgaacatgaggggt
atgatgaagtttctaacctgctcaggcaaattaaggcctgtccagatttt
tcaaacttagcTTAactttttatcaccgtttccacttgtcatagtATGTC
ACTTCaacatcgaaagaagcgtatttgagtgtagatcactggaattgctg
tgccataattaattttttcacccaaaaaaagatattaggcaaaaaccaaa
aaatgctgacgtcagcaaaacttgttttttgaataactccagtttggctt
atggtaaaaacatgaaatttggaccaaagttgcacactattaaaaggatc
atttaaaaaaaatatttttaaaatttttctgacgtcagcactttattgca
aaatttcgtattttgctgatttctcgtgtaacctaattttttttcgctga
ttttcgcgaaaaaccacaaaaactgattatgacggcataatcgatgacgt
cataaaaactaaaaattgaatttctcaaggatGGTTTATTCAATTGTCTT
TTagctttcaccaaagatgtatcataatcagtttttgcagattttcgcgA
AAaccagcgaaaaaacaattaggttacacatcaggttacaAACTAAATCA
TATTACCCTttatgttcagtcatttgtttggtcattttctgtcgactaat
gcgatctagaAATTATggtatttttcagtttttgagacatgccataactt
acccgagctGAAAGGGTTGGaagaatcagaaaatcaaacttcagtccacT
AAGGGTCAGAAAGAATAaggaaactttcaaatttttgccccccagaaaga
tagaaattttgTCTCAATAAGGGCAACAGAATTCACAGTTTTGCTCCTCC
TTTTTTAGTTCCGCTATAAGTGTCCGAGGGTAGAAGTAAATATTCTGTTG
CTTTTTCTTGTAAgaattattttataagaacatagaGCTCGATCAATTCC
CGAAAGCTAAGACCAAATTAAGAAAAATCCTGACTCTTTTAACTcttagg
aaaattttaacatttgaTCTCGaatcccccccaaaaaaaattaataggCA
AGTCTCAAGCAAAAATCAATGGTTCATATAAACTAAATGTATTTTAGTAG
CCTTTTCTTTGGGAAAGTAAAAatatcttttgttttctttaggTAACATG
AAGACTTTGTGGGTAGCAGTCCCACTATCATCTATCCTTTTTGGTTTGAT
CATAATGAACGATGACGTCACCCACGCTAAAACAATCGACACATGTGGTT
GTAAAGAGTTGTTAATGCAATGTTTTGGCGTTGTCGAAAAAGCAGAAAGC
CGAGTGAAAAATTGTCTTGAAGCTCACAAAAAATGTCAAGCTTCTTGTCT
GGATAAAGGAACTGAAAGACGGCGAGAAATGAAATCCAGCCTTtgggaaa
aagaaaaattatttgattCTTTTTGGAATGAGATTtaaagtttattttat
tttctataaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068261-exon-scaffold_482-1491911889:298661..298885 | TCONS_00068261-exon-scaffold_482-1491911889:298661..298885 | Clytia hemisphaerica | exon |
| TCONS_00068261-exon-scaffold_482-1510915933:298661..298885 | TCONS_00068261-exon-scaffold_482-1510915933:298661..298885 | Clytia hemisphaerica | exon |
| TCONS_00068261-exon-scaffold_482-1575043694:298661..298885 | TCONS_00068261-exon-scaffold_482-1575043694:298661..298885 | Clytia hemisphaerica | exon |
| TCONS_00068261-exon-scaffold_482-1491911889:300503..300821 | TCONS_00068261-exon-scaffold_482-1491911889:300503..300821 | Clytia hemisphaerica | exon |
| TCONS_00068261-exon-scaffold_482-1510915933:300503..300821 | TCONS_00068261-exon-scaffold_482-1510915933:300503..300821 | Clytia hemisphaerica | exon |
| TCONS_00068261-exon-scaffold_482-1575043694:300503..300821 | TCONS_00068261-exon-scaffold_482-1575043694:300503..300821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:298661..300821 + |
Blast
The following BLAST results are available for this feature:
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