TCONS_00068266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068266
Unique NameTCONS_00068266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068266 ID=TCONS_00068266|Name=TCONS_00068266|organism=Clytia hemisphaerica|type=transcript|length=779bp
TTGACTATTTATTTTTTGAGCAAGCTTCAACAGAAAGTTTGTTTAGACAA
GAAGATCGAATGACTAGAACGTTACAAGATTatacttgaaaatatttttt
tttttcataaagaaaAGTGAAAGGCAACTTTCAAGTGCCATCGTTTTATA
ACATTcacttttagttttaaaatgttttcgAATTTGACATGGTTTGTTGC
AGTTTTAATCTGTTGGAGTTTTGTGGATTGGAAAGTCGATGCTCAGTTAT
CTCCTGGAAAAGCTAATGTTTGCGCTGAAACAATCAAACAACCTTACTAC
GTGTCTGTCCGAAAATCGAGAACTGACTATCAAAATTACCGGACATGTTG
CAGAAGAGTTTTACGCTTTTGCACAAGCAGGTGTACTCGCTCAAGAAAAA
TTACGGTATATTACACAACTGCTGAAGTGCGATACAAACAGGGTTATCGA
TACTTCTGCTGCTCTGGATGGGCGAGACAAGGTGATAGCTGTCCTACACC
GATTTGTAATCCTGGTTGTGTAAATGGACATTGTTCAAGACCTGGTGTTT
GCACGTGTAAATCAGGCTATAATGGAAACAGATGCGAAAAAGATATTGAT
GAATGTTTGAGGAAACCTTGCGACCAAACTTGTAAAAACCTTCCTGGAAC
CTATGCATGTTCGTGTAGAACAGGATATAAGAAAATCAACAATGATCCAA
AATCTCGTCAGTGTGTCAATGTGAACGAATGTTTGACAACACCATGCAAA
TGTGCTCAACCGAAGAATTGCAAAGCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_482:367268..374313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068266 ID=TCONS_00068266|Name=TCONS_00068266|organism=Clytia hemisphaerica|type=transcript|length=7046bp|location=Sequence derived from alignment at scaffold_482:367268..374313+ (Clytia hemisphaerica)
TTGACTATTTATTTTTTGAGCAAGCTTCAACAGAAAGTTTGTTTAGACAA
GAAGATCGAATGACTAGAACGTTACAAGATTatacttgaaaatatttttt
tttttcataaagaaaAGTGAAAGGCAACTTTCAAGTGCCATCGTTTTATA
ACATTcacttttagttttaaaatgttttcgAATTTGACATGGTTTGTTGC
AGTTTTAATCTGTTGGAGTTTTGTGGATTGGAAAGTCGATGCTCAGTTAT
CTCCTGGAAAGTAAGTTTTATTTGACTGGGaatttttttgtccacttttt
tgcactttttaaAGATCAATATCTCGAGCCCGTGTCTTCTTTACAGAGAA
ATACATCCTCAAAAATTAATGTACGTACAATGAAAACACAAACTTTTTTC
GGCAATTCCCTGGTCTTGATAAATGCTGAAACACATTATTCTTCTAAAAA
GCTCATATAATAATTTTAACTTAGCAAGGACTTTCTAATTTGACGAATTA
AAATTCCAAGAGACTTTTTATAAAGCTTTAAGCATGAACTTTCAGCATCT
TGCGGCTTAACATCATTACAATCAACTAATAATAACTCGACCATGATTTA
ATTAATAGCTCTTTGGTGACTGTTACCCTCATCATTAAtgcatttttttg
cgtgatattaaaaaaaactacgCAGCtactttaattttgaaagacctttt
aaaagttatctGGAAGGGGGTACTCataaaaaaatgccaaatacTGAAAT
GAAAAAGTCCCCTAGCCTAAGAACCGAAAGCACAAAGTGAAGTTGAATAA
GTCATCTAAATGGTAGATTTTGAGAAGATGAACTCTAGACATCCCTGTAT
CAGTAACCAGATCCGCCTCGGTGGATGATTTCGACCACTGGTGGGAGATA
CTGAGTACTCTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTttagccaactgaaaatatt
ctttaaaattaataaacgggggggtcctaataaggtccgggggggttgga
aaattttcgtaaaattaacaagcgggggggggaccgtttatttggcacct
aagagtaagcccgctaagaattacttaaaattttctACCCCAATTTAAAC
AATGAAATTTATGATCTTACCCCGGTCAACGAGATAGGGGTGTAACTTGG
GAACCATTTAAGTCTCAATGATGCTGAACGAAATACACtccattctcaca
gacccgctaggattttttcagctagtggggataaaaataacgatCTAAAT
AATGGTGggaaatcataaaatgataTTCCCGTACTTTTTTGACTGTGGAT
ttaaaattccattgttttcaagttagaaaactcggtggggatgggaaaaa
aggtgtcaggaaaattgcccccgagaaaactANAAGATGACCATTGGGTA
TACCCACCGTTCACTTAAGGTTAAATTCAAACAGTTTAAACCTACTAAAG
CTTTATTTTATATTCCAGTTTTTTTCGGTGTCAGGAAAATTTCCCCcgag
aaaactgccccccggaaaactgccccctagaaaattgccccccggaaaac
ggccccccagaaaattgccccccaggaaaattgccccccggaaaacggcc
cccagaaaattgccccctaggaaaattgccccctaattttccatttttcg
aaactaaatctaactcaattttcaacatCCTTTCTTTAATCAATCAACAA
ACATTGGAGCTCGATTGGCTCGATTTGATTCAAAGTTTTCGAAACGTTAA
AGTTTTTGGatgttttcaatgactaaaAAGGGACTTAAAACATTTCTTTG
TGAAACTTTTTGGAGATTTGAAATTTCCCATGTAAAAAACGGATTTTGTA
GACCGTGCACggtaaaacaaaaacattgaattatcaaatgaattaaaatt
cttaattcttaaagaaaaaagacgcctcaaaaacgacttttacaagtttt
gtatgAGGTGGAGAAAGATAGTCGAGTaataaaatcactttcaaaaaaat
ctttccccaTTTCTTAACCCTAAGCGCTTAagctaagggaactaattttt
actaactcgccaaaataagttcccaccaaaattaaaatttcagttttctt
ggctaaataacccctgaaattcaacaaagttgctcaaaataagatgaAAT
AGAGCAGATTTGCGTtgtcattcgctaaaattaattccaaccacagttaa
aaaattaattacagttttccccaaaaaaagttcccaccaaaataatctat
ttttcgaaaattttctacccaggacattgtTGATCCAACCCCTCCTCCGC
TTATCAATTTTTCGGAATNNNNNNNNNNNNNNNNNNNNNNNNctaggggg
caattttcctagggggcaattttcctagggggcaattttctagggggcaa
ttttccgggggcagttttccggggggcaattttctcggGGGCAGTTTTCC
TAGAACCGGGAAAAAATAGCAtggttttatttgattattttcagtgggga
ctaAAATTGGAGGATGATTTTTCCACTGGAgacgatatttttgccaattt
ttccagtgggaagggccAGTGGGCCTTTCAGAAGGGGGTGTCGAAATAGG
TAGCTTGTAAAATTAGCAATGCATTCTCTTCGTACATGATTATTTTCAGA
TAAATTTTTATTAGTTGTTGACATTCAGCACGATAAATATCGACCAAATG
CTTATCACAGCTTGTATTTCTAAGAAGGCCCATGAGACCCATAGCTCACG
GTGCGTTAGTAGAGATTCTGTGTGAACACAATCATTTCCCTACCTTGAAC
GATACATTTTGATATTCGATATTTTCTTCCTTGCTTTATTAGCTATCGTT
CAAGATTGTTTTGAGAATGCTACTTCCCTTATGAAATTTGAGATTATCAA
AAAAGCCAACAATTGCATTTTCTTGTTATCAAGTAAATACTCCCCCAAAA
ACTTGCGAATCCTTCTGCAAATAAGAAACGCAAGAATTGTAAAATGTGAC
TAGAaacaatagatcttatcggagtttttgatttttctaaaaaagtgatg
cattgtgggattgtttcggaaGTATCACAATAGGATttcctcgaggaatt
cctaagagatttttattttaatactcccaaaacaatcccacaatgcattg
cttttttagaaaaataNAGAAGGGGGTGTCGAAATAGGTAGCTTGTAAAA
TTAGTAATGCATTCTCTTCGTACatgattattttcaaataaatttttatt
agtTGTTGACATTCAGCACGATAAATATCGACCAAATGCTTATCACAGCT
ATGTATTTCTAAGAAGGCCCATGAGACCCATAGCTCACGGTGCGTTAGTA
GAGATTCTGCATCAACACAAACATTTCTCTACCTTGAACGATACATTTTG
ATATTCGATATTTTCTTCCTTACTTTATTAGCTATCGTTCAAGATTGTTT
TGAGAATGTTACTTCCCTTATGAAATTTGAGATTATCAAAACAAAGTGAA
AATTCTAACTCAACGCAAATCAAAGAGATAATCATTCTAAAAAGCCAACA
ATTGCATTTTCTTGTTATCAAGTAAATTCTCCCCCAAAAACTTGCGAATC
CTTCTGCAAATAAGAAACGCAAGAATTGTAAAATGTGACTAGAaacaata
gatcttatcggagtttttgatttttctaaaaaagtgatgcattgtgggat
tgtttcggaaGTATCACAATAGGATttcctcgaggaattcctaagagatt
tttattttaatactcccaaaacaatcccacaatgcattgcttttttagaa
aaataaaaaacttcgaTAAGATTTATTgtcgtttttttttcactttttta
gaagaaaaaaactttttagtaaGTAAGGACTCAAAATTAGGTCaattttt
aagctattttcagtttgattttaaaacttttggaaCATATTTTGACAACG
TTTAGCGAATTAAATAACATTTAATGATTAacgcaagaaagtgcatgttt
CCCTCGTGTTTCATCGTCAAATCTGCATGTTGAGTGTTTGTAAAACGAGT
GGTCGAGGTTGAGTCAatttatacacccccttctcacagacccggtagga
tctttcagccagtggggataaaaaaaacagactgaaactcgatgagattg
atattcccatattctttatggttgaagatttgaaattcattttttttcaa
gtcagtGGGGAtaggaaaaatagcataatattgtGCAATTCCCGGGGTTT
GTGAGTGTATGGGTGTGTGGGTGTATTTATAAGGCTAGCATATGAATTAT
TTACTGACAAACTGCTTGAAATAACTCATGGCTTAAAGTCTACACTAACA
CATACTAAATGCATGATAACTAATCTTATTATAGAGCTAATGTTTGCGCT
GAAACAATCAAACAACCTTACTACGTGTCTGTCCGAAAATCGAGAACTGA
CTATCAAAATTACCGGACATGTTGCAGAAGAGTTTTACGCTTTTGCACAA
GCAGGTGTACTCGCTCAAGGTAATAACTATTTCCATATTCTCATAGGCCA
AATGTTTGTTCAGCTACCATTAAACAATTATATTATGTGTCTGTCCGAAA
ATCGAGGATTGGTTATCAGAATTATCGGACATGTTGCAAAAGGGTTTTGA
GAGCTTGTACCAGCAGGTGTACTCGCTCTAGGTAAGTTtataatttatat
ttatattactAAATAATGGCGAGAAGAACTCtcacaaaaattatatttcc
ccTACGGTATACTGAAAAGATCGATCAGAATGTATTTAAGTAAAAATCAA
CTTAAAAACTCAATGCATACTCTCAAGTTGaacatttacaagaattttcg
tcattttcgtcccttattatatttttctaaagaacgcgtcatctctattg
ttttaaataaccaattatgtgagcatcttgtaaaaaactTCAATACAACT
GACTCTTACTCCTTCATGTGTGTCTCATTTTAAAAACGTAAATTTTTTCT
TCCAGAAAAATTACGGTATATTACACAACTGCTGAAGTGCGATACAAACA
GGGTTATCGATACTTCTGCTGCTCTGGATGGGCGAGACAAGGTGATAGCT
GTCCTACACGTAAGTTTTTTAAATCAAGAATCCTCGCtgtttttttgcca
aatcttcgaaaaaactcCCTGAGTTGTATATATGTATCTTAAGGTATTTA
ATATGTTATAAGCTTAACTTTGCTTATAGCGTTTGATATACAATGGAGTC
TCGATAAGTTAAACACCCACGGGCGGGGATTATAGATTTGTTCGCGTTGA
GGAAATTTTGAGCTttagagtaaggtttataactGAAGGAACCATAAAAC
TAGTTTAAGtttaggagacattcgagttaaagaggccCGAACTATCTTTG
TATTTGACTTTTAATcggaataccttatcggggaaaaattttggtcgggg
aaaattttggtcggggaaaaatattcgttatatggccgaaatttcgtcac
ttttccccgacgaagttttcccgaTAAGGTAACTGCGTAAGTTTTATCGC
ACATAAGACTTTTAAAGAAAGACAAATGAATGAGGAATCTTACCTACCTT
TAATGAAGAAGCtgttttattcttcattttagCGATTTGTAATCCTGGTT
GTGTAAATGGACATTGTTCAAGACCTGGTGTTTGCACGTGTAAATCAGGC
TATAATGGAAACAGATGCGAAAAAGGTCGATAATTCCACTACTTTTTAGA
CAAACTCTTTCATTCATTCTTGTGCATTACCTATCAAATATTCagaaatg
attttcaaaacttACGAATACCAACGCTTATGTCTAATAGAGATAAATTT
TCCATTCAATAATCTCCCTCAGAAGGAGATTtagaaattttcgaaatttg
gtgaGACAAGGTTGTTTTGGAGAGTACGACAATTAACAGACCAGAACCAT
CTTATAATTTTACCATATCATTTCTATTACAGATATTGATGAATGTTTGA
GGAAACCTTGCGACCAAACTTGTAAAAACCTTCCTGGAACCTATGCATGT
TCGTGTAGAACAGGATATAAGAAAATCAACAATGATCCAAAATCTCGTCA
GTGTGTCAGTAAGTCAGTAATGACTGGATGAATGtgttaagctttttttc
cttTGACGCCATAGTGGCGGTTACTACATAACACCCAGGGGCGGGGGTAC
TACGGTTGGCGGACgtggggtatgtgcggacgggacctacAAAAACCGAC
TCtaagagagactttttttttaattttcttcgatttttaaaaaaagtggt
acccttaaagagacttttttacaattttttctcttgaaatcaaaaaaaat
tcccaaaatcgtgaattttccgacccttagagagagtaatttaaagtttt
ctgatttttccgacccgtagagagactttgaaaggtgaaaagaccgaccc
ttaccgtccgcaccaGCACCCATTGTTGCCTAAGTATCCTTCTCAGGAGA
ATACATCACCACGACCTTATTTCTTACTTTTTAAGATGTGAACGAATGTT
TGACAACACCATGCAAATGTGCTCAACCGAAGAATTGCAAAGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042611XLOC_042611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068266-exon-scaffold_482-1491911889:367268..367527TCONS_00068266-exon-scaffold_482-1491911889:367268..367527Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1510915933:367268..367527TCONS_00068266-exon-scaffold_482-1510915933:367268..367527Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1575043694:367268..367527TCONS_00068266-exon-scaffold_482-1575043694:367268..367527Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1491911889:372102..372236TCONS_00068266-exon-scaffold_482-1491911889:372102..372236Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1510915933:372102..372236TCONS_00068266-exon-scaffold_482-1510915933:372102..372236Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1575043694:372102..372236TCONS_00068266-exon-scaffold_482-1575043694:372102..372236Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1491911889:372723..372826TCONS_00068266-exon-scaffold_482-1491911889:372723..372826Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1510915933:372723..372826TCONS_00068266-exon-scaffold_482-1510915933:372723..372826Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1575043694:372723..372826TCONS_00068266-exon-scaffold_482-1575043694:372723..372826Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1491911889:373350..373442TCONS_00068266-exon-scaffold_482-1491911889:373350..373442Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1510915933:373350..373442TCONS_00068266-exon-scaffold_482-1510915933:373350..373442Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1575043694:373350..373442TCONS_00068266-exon-scaffold_482-1575043694:373350..373442Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1491911889:373700..373825TCONS_00068266-exon-scaffold_482-1491911889:373700..373825Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1510915933:373700..373825TCONS_00068266-exon-scaffold_482-1510915933:373700..373825Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1575043694:373700..373825TCONS_00068266-exon-scaffold_482-1575043694:373700..373825Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1491911889:374253..374313TCONS_00068266-exon-scaffold_482-1491911889:374253..374313Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1510915933:374253..374313TCONS_00068266-exon-scaffold_482-1510915933:374253..374313Clytia hemisphaericaexon
TCONS_00068266-exon-scaffold_482-1575043694:374253..374313TCONS_00068266-exon-scaffold_482-1575043694:374253..374313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:367268..374313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0149719	0	0	0.178107	0.834066	0.744482	0	0.000734298	0	4.91098e-05	0	0	1.24712	0	0	0	0	0	0	0	0	0	0	0	0	0	3.67666	1.61746	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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