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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068268 ID=TCONS_00068268|Name=TCONS_00068268|organism=Clytia hemisphaerica|type=transcript|length=6443bpRun BLAST on NCBI protein sequence of TCONS_00068268-protein >TCONS_00068268-protein ID=TCONS_00068268-protein|Name=TCONS_00068268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1255bp MFSNLTWFVAVLICWSFVDWKVDAQLSPGKANVCAETIKQPYYVSVRKSRRun BLAST on NCBI transcript from alignment at scaffold_482:367317..384151+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068268 ID=TCONS_00068268|Name=TCONS_00068268|organism=Clytia hemisphaerica|type=transcript|length=16835bp|location=Sequence derived from alignment at scaffold_482:367317..384151+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_482:367317..384151+ >TCONS_00068268 ID=TCONS_00068268|Name=TCONS_00068268|organism=Clytia hemisphaerica|type=CDS|length=3768bp|location=Sequence derived from alignment at scaffold_482:367317..384151+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068268 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 162.54 bits (410), Expect = 4.364e-40 Identity = 147/498 (29.52%), Postives = 232/498 (46.59%), Query Frame = 3
Query: 381 RYKQGYRYFCCSGWARQGDSCPTPI--CNPGCVNGHCSRPG--VCTCKSGY----NGNRCEKDINECSSKALNGCQHKCLNNMGSFTCACNKGYKLLPDGKSCQDINECSTLNGGCNQICTNKPGSFQCSCRRGFRLSSDGKTCKDINECSEQKP-CDNNNGICKNTFGSYQCFCEVGFQLLSDKKTCRDINECSKKELNGCQHKCSNTVGSFFCSCNVGYRLNADKKKCDDINECIEQTDKCGHNCHNTIGSYTCSCRPGYRLNGDKILCKALPCVTVSSLNHG-NISCTGYVTDQSCSYECHSGFNLLGSDQRTCLPSSQWSGNAPQCQRKDCPTIEAPEHGSIMIPCVAKYGFTCLKKCSKGFYLDGTTSAKCVLEGNQTTWTAKDSICRASTPCEPNPCLNNGQCLETSIDTFVCDCSGTL------SKGKLCDIGIVDIPTLPQLVLNQWSTDIEIMARPTAFVNIVPKSRMELTFDPPEIRIEVPESSAKFQ 1826
R KQGY R D C C CVN PG VC C SGY +G RC ++ C+S+ +GC+H+C+N GS+ C C++G+ L PD K+C I+ C++ N GC C N S+ C C +GF L+ D KTC+ IN C+ KP C++ C N SY C C G+ L + KTC ++ C++++ +GC+ C NT SF C C+ G+ +N D K C ++ C+ C ++C N S+ C C G+ L D C L + +HG SC ++ S +C G+ +L D +T C+RKD +A +HG I + +TC +C +GF L +C + +C+++ + C+NNG ++++C CS + K C G +D+ + + + E++ + FV + S LT P R+ + + S +
Sbjct: 263 RCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVN----VPGSFVCQCYSGYALAEDGKRCVA-VDYCASEN-HGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHE---CVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQD-HGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALG--DHGCEHSCVS--SEDSFVCQCFEGY-ILREDGKT-------------CRRKD--VCQAIDHGCEHICVNSDDSYTC--ECLEGFRL-AEDGKRC----------RRKDVCKSTHHGCEHICVNNG-------NSYICKCSEGFVLAEDGRRCKKCTEGPIDLVFVIDGSKSLGEENFEVVKQ---FVTGIIDS---LTISPKAARVGLLQYSTQVH 704 HSP 2 Score: 145.206 bits (365), Expect = 1.135e-34 Identity = 94/246 (38.21%), Postives = 126/246 (51.22%), Query Frame = 3
Query: 573 NGCQHKCLNNMGSFTCACNKGYKLLPDGKSCQDINECSTLNGGCNQICTNKPGSFQCSCRRGFRLSSDGKTCKDINEC-SEQKPCDNNNGICKNTFGSYQCFCEVGFQLLSDKKTCRDINECSKKELNGCQHKCSNTVGSFFCSCNVGYRLNADKKKCDDINECIEQTDKCGHNCHNTIGSYTCSCRPGYRLNGDKILCKALPCVTVSSLNHGNISCTGYVTDQSCSY--ECHSGFNLLGSDQRTC 1301
+ C H C+N GS+ C C +GY L D +C+ + C+ + C Q+C N PGSF C C G+ L+ DGK C ++ C SE C++ C N GSY C C GF L DKKTC I+ C+ +GCQH+C NT S+ C C G+ LN DKK C IN C C H C N SY C C GY L+ + C + + +HG C + S+ +C GF L+ D +TC
Sbjct: 247 HNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHE---CVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSN-HGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVD--HCAQQDHG---CEQLCLNTEDSFVCQCSEGF-LINEDLKTC 482 The following BLAST results are available for this feature:
BLAST of TCONS_00068268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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