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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068281 ID=TCONS_00068281|Name=TCONS_00068281|organism=Clytia hemisphaerica|type=transcript|length=551bp
AACACTTTTAGAAGTTCAACAACTTTACAAACAAAATTATCATGAAGGTT
GCTTTCGCATTCATCGTCATCTTTGCCGTCTTTGCAGtaAATGAAGCTGT
TCAAGGTCCAGGCCACGATACAATGATAAAAGGAGGTCGCCAAGCAAGAG
ATTACGCCATGCGCCGTGACTTCTTCTTCCAAGACTCATGCTCTGATGTA
GCTGGCTCCGCAACTTGTCAAGCCAAATTTGCAGCGGCTGGTCACATTTG
CAGTGGCGCTTATGACTTCCAGAAGAACTGTGCCAAATATTGTGAATTCT
GCTACTGATAGCTTGATGAGTTTGTTGCATCATGAACATTATTCCGATAT
TATGAATTTTTATCACAgagattaaaatttttaatatttataagtaaatt
tattgtaaagatTCTATATTTCTATTTATTTCTAACCTAGCAGGACAACG
ATAAGAATAGAATAGAACTACTACACAGAAAATATTCTTTCGTTTTTCNT
ATTTCTAACCTAGCAGGACAACGATAAGAATAGAATAGAACTACTACACA
G Run BLAST on NCBI transcript from alignment at scaffold_482:500668..502450+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068281 ID=TCONS_00068281|Name=TCONS_00068281|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_482:500668..502450+ (Clytia hemisphaerica)
AACACTTTTAGAAGTTCAACAACTTTACAAACAAAATTATCATGAAGGTT
GCTTTCGCATTCATCGTCATCTTTGCCGTCTTTGCAGGTTAGTAAATCTC
TGTTCTCATGGTTCCTGggaattttttagatttctttcACTTACACATTT
TggctaaagttaaaaaaatctcGTGCAGCGACAAAACTAACCTGTGCCAA
AATTTTCTTGGCTTGTCGAAAAGATAACGCAAGGTTGAACACACGACAAG
ATTTTTTCACAAACCATGGCAAATCGCCCGTGAGAGAAGTGATCCATGCT
ATGATAATACACGATGAATAATCTTCTATGATTATGACTATTTGTTAAAG
ATTTGGCTTGAACCATTTTCTTGACTCTTTTCACATTTtgtccttttctt
cttttttcagtaAATGAAGCTGTTCAAGGTCCAGGCCACGGTAAGTTTTT
TTAGTTCCTTGATTGAAACCGTTTGTGTTTTGTTCGACTGAACTATTTCT
GAGCTCCCTTTGTGGTTGAGTGAGAAATTCGAGTCGTGTTGAGAAAACTT
CTGATTCAGTtgagttttttaaaaatttattaacaAACGGAAAGTTTGTT
GCAACCTCGCTCCGTAAGTAGTATCGACTTtatatgcttactgatagcat
CATTCTATTTTTTGGCGTCTATCAAGAAAGTAAATATAGCCTAGGAGACA
CGGAGACAAGGTTGGGTCAGTTGAAGATTAAATGTAGGGACTGGGATATA
ATATTTGAAAGGATTCTCTTATAAACCACCCCGGTGAAATCTTTTTCTCG
TTACCTTTTCATAGCAATtggattttttctaaatttgattCTCATTCAAC
AGTCATTATGCTTTATTTCAAATCAAGTTTATTTCTAACCATAGATACAA
TGATAAAAGGAGGTCGCCAAGCAAGAGGTAAAGAAATTATTATCACCTTA
AAAATGTCCCGTTCTTGAACTGAAATTAATGATAAAGCATGTAAAAGATG
AGCTTTTATAACATCCAAAAATACTAAAACACTGAGGGTTGGAAAGATTC
TCTAATTACAATAAGCGGTGGAGAGTCCTATAAGCCCGGGATTTTTGGAA
TTATTTCCTAACGACGAAAAACTAAAAGCCAGTCCCTTAATtcgcttttt
tatgattctgaaaGCCTTAAAGATTGCATCGCGTTCATCAGCAAAATTAG
AAAGTgatgcaagtggctctgggtacgagaaNTTAAAGATTGCATCGCGT
TCATCAGCAAAATTAGAAAGTGATGCAAGTGGTTCTGGATACGagacaaa
atcgaaaaattaacaaaaaaagggGTCCCTTTTCATATTTGTGAGAACCA
TCCTTTAATCATTTCCCCTCCCGTATAAACAGATTACGCCATGCGCCGTG
ACTTCTTCTTCCAAGACTCATGCTCTGATGTAGCTGGCTCCGCAACTTGT
CAAGCCAAATTTGCAGCGGCTGGTCACATTTGCAGTGGCGCTTATGACTT
CCAGAAGAACTGTGCCAAATATTGTGAATTCTGCTACTGATAGCTTGATG
AGTTTGTTGCATCATGAACATTATTCCGATATTATGAATTTTTATCACAg
agattaaaatttttaatatttataagtaaatttattgtaaagatTCTATA
TTTCTATTTATTTCTAACCTAGCAGGACAACGATAAGAATAGAATAGAAC
TACTACACAGAAAATATTCTTTCGTTTTTCNTATTTCTAACCTAGCAGGA
CAACGATAAGAATAGAATAGAACTACTACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068281-exon-scaffold_482-1491911889:500668..500754 | TCONS_00068281-exon-scaffold_482-1491911889:500668..500754 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1510915933:500668..500754 | TCONS_00068281-exon-scaffold_482-1510915933:500668..500754 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1575043694:500668..500754 | TCONS_00068281-exon-scaffold_482-1575043694:500668..500754 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1491911889:501078..501107 | TCONS_00068281-exon-scaffold_482-1491911889:501078..501107 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1510915933:501078..501107 | TCONS_00068281-exon-scaffold_482-1510915933:501078..501107 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1575043694:501078..501107 | TCONS_00068281-exon-scaffold_482-1575043694:501078..501107 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1491911889:501562..501594 | TCONS_00068281-exon-scaffold_482-1491911889:501562..501594 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1510915933:501562..501594 | TCONS_00068281-exon-scaffold_482-1510915933:501562..501594 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1575043694:501562..501594 | TCONS_00068281-exon-scaffold_482-1575043694:501562..501594 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1491911889:502050..502450 | TCONS_00068281-exon-scaffold_482-1491911889:502050..502450 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1510915933:502050..502450 | TCONS_00068281-exon-scaffold_482-1510915933:502050..502450 | Clytia hemisphaerica | exon |
| TCONS_00068281-exon-scaffold_482-1575043694:502050..502450 | TCONS_00068281-exon-scaffold_482-1575043694:502050..502450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:500668..502450 + |
Blast
The following BLAST results are available for this feature:
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