TCONS_00068297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068297
Unique NameTCONS_00068297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068297 ID=TCONS_00068297|Name=TCONS_00068297|organism=Clytia hemisphaerica|type=transcript|length=979bp
GGGAACAAAAGATGAAGTTTATGCGACTGGTGATGCAGGGTTGCTTGGAG
CTGTTTTGGAAGCATATAATCATCAttggaatctcaaaatttctCCTGAT
GATTTTTGGATCCCTGTTGCAATTCGTGTTGGTAGGAAAATCAATGATAA
TGCTAAGGAGGACAAAGTTAGAGATTTCTTTGTTGATTTCGAAGgcaaaa
aagaaattgtcatTTTTACTAACTCAGAGACAATTCATGAAGTCGATTAT
GTCTGgttatttgaagaattttcacaaaacataaaaaatctcataaaaaa
agccAGAGTACAACGACCTGATGACTGCTAGTTTTTCCACTTCGACTCCG
ATAACAAAAATCGCCTCCCAAATCAATATAATGTCCTCGTTAcaagaata
ttttgaatataCCATGGTAACTCGGTGTGGGATCAAAGGAGTCGAAATGC
TGGGAACATTAGAAGACTGGAAATCACTCATTACAAAAATTGATCAACTT
GCTGAATTGCTCAAACCTCTTGAAGATGTCTTGAAGCTTTCTTATTGGTT
TGAGATCGTAAGGGACGTGTATGTGAATTTGTTGGCAACATTTGAAGGTA
ATCCAGATATTGGTTGGTGGAGCAGAATTATTTCGACAGACAACCATGGC
TCTGGCGCATGTAAATACATGGGTTGGATCTTTCAATTTCTACAAGatGA
ACGTGGCTTcaataatttatcaaaaatgcAAACTTCGATAACGAGCGTGC
CGATGAAAATAACGTACGATCCACGAGCAAAAGGAGAACAAAGTGCACTT
GTGGCAGGACCAGTTGGATTTACAATCGAAGAAGGAAATGAAGATTCGAA
AAATGTTCCAACAATTCGACCGTACATTGGATGGGCTTTGTTGTTACCAA
AGAATTCAGCATTTAGATGAAACTAGCGGTCCCAGACGTCGTCAAAGACG
ACTTTTCACTATATTTCATtagtagtagg
Run BLAST on NCBI

transcript from alignment at scaffold_482:202922..204716-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068297 ID=TCONS_00068297|Name=TCONS_00068297|organism=Clytia hemisphaerica|type=transcript|length=1795bp|location=Sequence derived from alignment at scaffold_482:202922..204716- (Clytia hemisphaerica)
GGGAACAAAAGATGAAGTTTATGCGACTGGTGATGCAGGGTTGCTTGGAG
CTGTTTTGGAAGCATATAATCATCATTGGAATCTCAAAATTTCTCCTGAT
GATTTTTGGATCCCTGTTGCAATTCGTGTTGGTAGGAAAATCAATGATAA
TGCTAAGGAGGACAAAGTTAGAGATTTCTTTGTTGATTTCGAAGGCAAAA
AAGAAATTGTCATTTTTACTAACTCAGAGACAATTCATGAAGTCGATTAT
GTCTGGTTATTTGAAGAATTTTCACAAAACATAAAAAATCTCATAAAAAA
AGCCAGAGTACAACGACCTGATGACTGCTAGTTTTTCCACTTCGACTCCG
ATAACAAAAATCGCCTCCCAAATCAATATAATGTCCTCGTTACAAGAATA
TTTTGAATATACCATGGTAACTCGGTGTGGGATCAAAGGAGTCGAAATGC
TGGGAACATTAGAAGACTGGAAATCACTCATTACAAAAATTGATCAACTT
GCTGAATTGCTCAAACCTCTTGAAGATGTCTTGAAGCTTTCTTATTGGTT
TGAGATCGTAAGGGACGTGTATGTGAATTTGTTGGCAACATTTGAAGGTA
ATCCAGATATTGGTTGGTGGAGCAGAATTATTTCGACAGACAACCATGGC
TCTGGCGCATGTAAATACATGGGTTGGATCTTTCAATTTCTACAAGGTAT
GTAAAAAAAATCTTAACAACCGTTGTTGCAGACTGGAGACTTCAAAACTG
GTCGTATTCGGCTGAAATTTAGCTTATTAATCTTTGGGCGAATCCCTGGG
GTAATTCTTTTTCTTTTTTTGAAAATTTTGATTTTTAAGAGCGTGGCCAC
GAGTGTTAGCCCCAAAATGAGACTGAAAGTTTGGAGCAGGCGAGAGACTT
CAGAATGATACGATTTGGTTGAAGTTTCTTAGAATTGGACGTTCGACAGT
GTTTCAGAATCAGATTTAAAAAGTTTACATAGAACAGGTTTTATTAAAGG
TTTTACTTTTTGAAAAAGCTTGTGAATCAAAATTTATGAGTAAGCAAACG
ATATCACTCTTATTTAAAAACCTTTGAATCTTAAATTTTAAATTTTGAAG
TTTCTTTGAGTTAACTCTCACTCTCACAAAAGTGCAAAACTTTTTGAAAT
GAATTATTTCTGCGATATATTGCACCCTCAGCAAGTACGTAAGTAAGCTT
TTTTTTAAATCTAGATGAACGTGGCTTCAATAATTTATCAAAAATGCAAA
CTTCGATAACGAGCGTGCCGATGAAAATAACGTACGATCCACGAGCAAAA
GGAGAACAAAGTGCACTTGTGGCAGGTAAGCTATCAGATTTCTATAACAA
TAACTGTTAAGAAACAGCTTCAACAAGCTAAGAACAATAAGATGTCAGAA
AGGGATAAGAAAATTCTGATTTCAATGAAATCAAAAAGAATCATACTTGA
ATTCTGGAAAAATAGTCAAAGAACAAAATAACACAACAATAAAATTGCAT
TAAAAACACATCTTTTTTCAGGACCAGTTGGATTTACAATCGAAGAAGGA
AATGAAGATTCGAAAAATGTTCCAACAATTCGACCGTACATTGGATGGGC
TTTGTTGCTACCAANTTTTTCAGGACCAGTTGGATTTACAATCGAAGAAG
GAAATGAAGATTCGAAAAATGTTCCAACAATTCGACCGTACATTGGATGG
GCTTTGTTGTTACCAAAGAATTCAGCATTTAGATGAAACTAGCGGTCCCA
GACGTCGTCAAAGACGACTTTTCACTATATTTCATTAGTAGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042622XLOC_042622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068297-exon-scaffold_482-1575043694:204021..204716TCONS_00068297-exon-scaffold_482-1575043694:204021..204716Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1575043694:203392..203502TCONS_00068297-exon-scaffold_482-1575043694:203392..203502Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1575043694:202922..203093TCONS_00068297-exon-scaffold_482-1575043694:202922..203093Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1510915933:204021..204716TCONS_00068297-exon-scaffold_482-1510915933:204021..204716Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1510915933:203392..203502TCONS_00068297-exon-scaffold_482-1510915933:203392..203502Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1510915933:202922..203093TCONS_00068297-exon-scaffold_482-1510915933:202922..203093Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1491911889:204021..204716TCONS_00068297-exon-scaffold_482-1491911889:204021..204716Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1491911889:203392..203502TCONS_00068297-exon-scaffold_482-1491911889:203392..203502Clytia hemisphaericaexon
TCONS_00068297-exon-scaffold_482-1491911889:202922..203093TCONS_00068297-exon-scaffold_482-1491911889:202922..203093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:202922..204716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0012883	0	0	0	0.517369	0	0.632575	3.65811	0	0	4.14425	4.66549	6.68635	6.12124	0.688121	1.39509	1.98545	4.45471	0.267803	0.132729	0.443568	0.258454	0.329415	0.317866	10.6466	10.0888	3.29121	2.07643
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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