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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068304 ID=TCONS_00068304|Name=TCONS_00068304|organism=Clytia hemisphaerica|type=transcript|length=871bp
taaaaaaagaagaaattttcaattatctTCTTTGGAAATGGTATATATGG
TATACAACAAATATTGACTTTGACGAAATTGTCTCTGACCAAACACGACA
TTCAACACAAACTAAACTTCTTTACATCAATGTAATGCGAATCACTGGAA
ATTTTCGTTATTTCTCTTGGCAGAAGCATACAAAAGCCTGGCGAAAAGGa
aacattgaaatattctttgaaaattcaTCTAACCTAACCTTTCGTAAAGT
TTCTTTCCGATTGTTGGTTTCTGACGACCTGAAAATGGCGAAGACACATC
AAATCGTTGAAACAGTATTTTATTCTTTAATGATTCTGATCGGTGGGATC
GGGAATATCTTGGTCATCATTTTCTTTGCactcaaatcaaaaaagaaaga
gttgaaTTCGTATCATTTCATTATTGCTCAATTAGCTGTGTCTGATTTGA
TTGTCTGTGTTGGAGTCcctgtagtggaaattcaatacaCCTTTGCTACA
AGTTATGCCAACGAGCTTATGTGTAAAGCAATTTCCGTCCCTTTTGTTGG
AGTTACTGTTTCTTGTTGGATTCTCTGTGGAATGTCTTTTGACCGGTATC
GAAGAATCAAAGATCCGATGGCTGAGAACTTTGGTAAAGTCAGAATTACT
TTGGCTTGCTTAATTGTTTGGTCTATTTTCTTCTTGGCAGCCATCCCTCA
ATTTATAAAGACAGTATATTATGCTGAAACTCAAGAATGCTATTTCGACG
CCTTTGAAAGCTTCTCGTCTTCGTTTGCTATTGGTTATTACGCATTCTAT
TTCATTGCAAATGTTGTTGTGCCTCTTAGCATTTTTCTGGTTCTCTATTT
CAAATCCCGAAATCGCCTTTC Run BLAST on NCBI protein sequence of TCONS_00068304-protein >TCONS_00068304-protein ID=TCONS_00068304-protein|Name=TCONS_00068304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
KKEEIFNYLLWKWYIWYTTNIDFDEIVSDQTRHSTQTKLLYINVMRITGN
FRYFSWQKHTKAWRKGNIEIFFENSSNLTFRKVSFRLLVSDDLKMAKTHQ
IVETVFYSLMILIGGIGNILVIIFFALKSKKKELNSYHFIIAQLAVSDLI
VCVGVPVVEIQYTFATSYANELMCKAISVPFVGVTVSCWILCGMSFDRYR
RIKDPMAENFGKVRITLACLIVWSIFFLAAIPQFIKTVYYAETQECYFDA
FESFSSSFAIGYYAFYFIANVVVPLSIFLVLYFKSRNRL Run BLAST on NCBI transcript from alignment at scaffold_482:351353..352503- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068304 ID=TCONS_00068304|Name=TCONS_00068304|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at scaffold_482:351353..352503- (Clytia hemisphaerica)
TAAAAAAAGAAGAAATTTTCAATTATCTTCTTTGGAAATGGTATATATGG
TATACAACAAATATTGACTTTGACGAAATTGTCTCTGACCAAACACGACA
TTCAACACAAACTAAACTTCTTTACATCAATGTAATGCGAATCACTGGAA
ATTTTCGTTATTTCTCTTGGCAGAAGCATACAAAAGCCTGGCGAAAAGGA
AACATTGAAATATTCTTTGAAAATTCATCTAACCTAACCTTTCGTAAAGT
TTCTTTCCGGTAAGCACTGTTGATTCAAAGTTATTTTAAAGTCACTTTGT
TAAGCTCAGACTCAGAGCACTCAAAGATTTTTGTGTTCTTTTCGAATCTT
CTTGACTTGAACAAGTCTTCTTGTCTCTTAATTTAACAATATTATAAATG
CTCGTCTCCATATTTCGAAATTGTCGGAAAAGTCTGTGTTCCTCGTGCGT
GTTCGAGTTATGGAGACTCCAACGTGGTCATTTACCCGAACAATATTGTT
TTAAATCTTATATCTCTTATTTCCTATTTTTTCTTGTAGATTGTTGGTTT
CTGACGACCTGAAAATGGCGAAGACACATCAAATCGTTGAAACAGTATTT
TATTCTTTAATGATTCTGATCGGTGGGATCGGGAATATCTTGGTCATCAT
TTTCTTTGCACTCAAATCAAAAAAGAAAGAGTTGAATTCGTATCATTTCA
TTATTGCTCAATTAGCTGTGTCTGATTTGATTGTCTGTGTTGGAGTCCCT
GTAGTGGAAATTCAATACACCTTTGCTACAAGTTATGCCAACGAGCTTAT
GTGTAAAGCAATTTCCGTCCCTTTTGTTGGAGTTACTGTTTCTTGTTGGA
TTCTCTGTGGAATGTCTTTTGACCGGTATCGAAGAATCAAAGATCCGATG
GCTGAGAACTTTGGTAAAGTCAGAATTACTTTGGCTTGCTTAATTGTTTG
GTCTATTTTCTTCTTGGCAGCCATCCCTCAATTTATAAAGACAGTATATT
ATGCTGAAACTCAAGAATGCTATTTCGACGCCTTTGAAAGCTTCTCGTCT
TCGTTTGCTATTGGTTATTACGCATTCTATTTCATTGCAAATGTTGTTGT
GCCTCTTAGCATTTTTCTGGTTCTCTATTTCAAATCCCGAAATCGCCTTT
C Coding sequence (CDS) from alignment at scaffold_482:351353..352503- >TCONS_00068304 ID=TCONS_00068304|Name=TCONS_00068304|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_482:351353..352503- (Clytia hemisphaerica)
AAAAAAGAAGAAATTTTCAATTATCTTCTTTGGAAATGGTATATATGGTA
TACAACAAATATTGACTTTGACGAAATTGTCTCTGACCAAACACGACATT
CAACACAAACTAAACTTCTTTACATCAATGTAATGCGAATCACTGGAAAT
TTTCGTTATTTCTCTTGGCAGAAGCATACAAAAGCCTGGCGAAAAGGAAA
CATTGAAATATTCTTTGAAAATTCATCTAACCTAACCTTTCGTAAAGTTT
CTTTCCGATTGTTGGTTTCTGACGACCTGAAAATGGCGAAGACACATCAA
ATCGTTGAAACAGTATTTTATTCTTTAATGATTCTGATCGGTGGGATCGG
GAATATCTTGGTCATCATTTTCTTTGCACTCAAATCAAAAAAGAAAGAGT
TGAATTCGTATCATTTCATTATTGCTCAATTAGCTGTGTCTGATTTGATT
GTCTGTGTTGGAGTCCCTGTAGTGGAAATTCAATACACCTTTGCTACAAG
TTATGCCAACGAGCTTATGTGTAAAGCAATTTCCGTCCCTTTTGTTGGAG
TTACTGTTTCTTGTTGGATTCTCTGTGGAATGTCTTTTGACCGGTATCGA
AGAATCAAAGATCCGATGGCTGAGAACTTTGGTAAAGTCAGAATTACTTT
GGCTTGCTTAATTGTTTGGTCTATTTTCTTCTTGGCAGCCATCCCTCAAT
TTATAAAGACAGTATATTATGCTGAAACTCAAGAATGCTATTTCGACGCC
TTTGAAAGCTTCTCGTCTTCGTTTGCTATTGGTTATTACGCATTCTATTT
CATTGCAAATGTTGTTGTGCCTCTTAGCATTTTTCTGGTTCTCTATTTCA
AATCCCGAAATCGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068304-exon-scaffold_482-1575043694:352245..352503 | TCONS_00068304-exon-scaffold_482-1575043694:352245..352503 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1575043694:351353..351964 | TCONS_00068304-exon-scaffold_482-1575043694:351353..351964 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1510915933:352245..352503 | TCONS_00068304-exon-scaffold_482-1510915933:352245..352503 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1510915933:351353..351964 | TCONS_00068304-exon-scaffold_482-1510915933:351353..351964 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1491911889:352245..352503 | TCONS_00068304-exon-scaffold_482-1491911889:352245..352503 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1491911889:351353..351964 | TCONS_00068304-exon-scaffold_482-1491911889:351353..351964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:351353..352503 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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