TCONS_00068369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068369
Unique NameTCONS_00068369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068369 ID=TCONS_00068369|Name=TCONS_00068369|organism=Clytia hemisphaerica|type=transcript|length=2251bp
TTAAATTCATCCTAATTCCTCTTCCAACAGAATAGTAATGAAAATTGATA
GAAACACAGATTTCTTAGAATTATCAACGAAAAACGTTACGGCAGACGAG
GACCCAGAGAGCggcgccattttgaaaaaggcGTCATTTATGGACCTAGA
AAATTCATCACCCATTAATACAAACAACGGTGAACCACCACACAAGAAAG
GGCGGAACAACATCCTAAATAACAACGAGGTTTTAACGCCCGTTGAAACC
ACCCAACACGCCCCAAATTACCGTGTTGACATGAAATTGAAAAGTCCGAG
CCCGACTGAGGATGATTATATAAAATCAGATAAAGTGCACACGCATCACG
GTCGTGTTACGCACTATTATCGCGATGAACCGAAACATGACATGCTTCTC
GCTGTCAAGccTTATAAGGAGATGGTGACAACGGACCAATCAAGATCGAA
TTCACCGGCCCATCATCATAGATCGATTGGCGAGAGGCGTGGTGAAAAAA
GAATGGATGAGCACGCCATCATTACGCGCTTGTTTGCCGATGGTCGTTGT
CTATGGCCTTCTTGTAATACCTCGTGTATGGATAAACACGATTTTGTAAG
ACACTTAGATACAACCCATGCAATGGACGAAAAAGCAGCAGCTCAGGCTA
GAGTTCAGAAATATGCCGTCGAAGAGTTGGAGGAAAGGTTATCATATGAA
CGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAATACGCTTCTGATAA
AGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTCTCCACCACCTCGAT
CAGGATCCGGACACCATCACCCAGTCAGTAACGGAGGTGTGGTCTACCTA
CCCTACCCGCCACCGCCACACCATATCCACGCCATCCCCACCCACGTACC
CGATGATCGTGTCAGTTCACCTCATCACCGTGAAAGAGAAAGAGAGCGTG
AGAGAGAACCACGATCTCCACCTCAATCGAACTCGCCACGAAAACATTCT
CACCATAAACCAGCCCCTGGCGGTCATTACCACTTACCGGCTCCACACTA
TTACCCAGTCCATCCAGCTTATCCAATCGGACGGCCCGTAGCTTTAAAAC
GCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATGAGAGATACCCACCG
CCCGGATTGATTGCCGCCCACCCAGAGGAATTAATACATCGACCAGCTAT
TGAGGCATCAGCACACCCACCAGGTCCACCATTAACGCCCAAACAAGAAG
GCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGGCAGCTATGGTTGAC
ATTGGGCATGGTAAGGAAGACATAGGTTATCAACTTCGCACAAAGGGTAA
TCTATACCAAGACCCAAACATCAGGCCACCTTACACGTATGCCTCACTTA
TTCGACAAGGTGTTTTAGACTCACCTAATGGAGAATTGACTTTAAACGAA
ATTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCAGAAAGAACACTAG
CACTTGGAAGAATGCCGTTCGACACAACTTATCGCTACACAAATGTTTTG
TTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGTCGATGATGTTGAA
TTCTTCAGGAGAAGAATGACAAAACCAGGACTACCACGAAGAGAATATTA
CGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAAGTGGTGGTGAATATG
TGACGGATCTTCCATCTATGGCCATGTCAAGAAAGGAAGATTCAGAAGAA
GATAATTCACCGCCACCTCCGCCCACGCAACAACATCACGCTCACGAAGA
AAACGGTGAACAAGAAAATTCGATGGCAATCAAAGAAGAACGAGAAGAAT
ACCTCCAGCATGCaGATACAGTGATGGTGACATCTTGAGAGTTTCAACAG
TGTTGCAGTAACAATTATGGAGACTGACAGTTGGAGTTGGTAGTACTTGA
CAATGAATTCAACTTCGAGACCCCTTTTTTGGAAGTTCGTTACTTAAATT
TAGTACTAGCCCATGTTGTATGTTATTTTctaataatatttattttatgg
ACTTTAGAGGATATAAATTTATCTCCTCGAATTTCTCGACAATCTCTCGA
ACttgaaaactattttctttttagcatAGAACTTTTTTAAGTGGGGCAAA
AATTTCTGTAGAACCTGTAGAAATCTCAATTTTCAAGAGATACCTTTTTT
TGTTACAGTAATCCTccttttaaaaacctttgtttagtatattttgtttt
a
Run BLAST on NCBI

protein sequence of TCONS_00068369-protein

>TCONS_00068369-protein ID=TCONS_00068369-protein|Name=TCONS_00068369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=616bp
MKIDRNTDFLELSTKNVTADEDPESGAILKKASFMDLENSSPINTNNGEP
PHKKGRNNILNNNEVLTPVETTQHAPNYRVDMKLKSPSPTEDDYIKSDKV
HTHHGRVTHYYRDEPKHDMLLAVKPYKEMVTTDQSRSNSPAHHHRSIGER
RGEKRMDEHAIITRLFADGRCLWPSCNTSCMDKHDFVRHLDTTHAMDEKA
AAQARVQKYAVEELEERLSYERSRLSAMLAHLEYASDKGYVLHKSAHSAS
PPPRSGSGHHHPVSNGGVVYLPYPPPPHHIHAIPTHVPDDRVSSPHHRER
EREREREPRSPPQSNSPRKHSHHKPAPGGHYHLPAPHYYPVHPAYPIGRP
VALKRESPGDEKSPKDERYPPPGLIAAHPEELIHRPAIEASAHPPGPPLT
PKQEGGYHPVRRRGEAAAMVDIGHGKEDIGYQLRTKGNLYQDPNIRPPYT
YASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSL
HKCFVRKENHKGAVWTVDDVEFFRRRMTKPGLPRREYYAPEERPNSPPES
GGEYVTDLPSMAMSRKEDSEEDNSPPPPPTQQHHAHEENGEQENSMAIKE
EREEYLQHADTVMVTS
Run BLAST on NCBI

transcript from alignment at scaffold_483:77882..85011-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068369 ID=TCONS_00068369|Name=TCONS_00068369|organism=Clytia hemisphaerica|type=transcript|length=7130bp|location=Sequence derived from alignment at scaffold_483:77882..85011- (Clytia hemisphaerica)
TTAAATTCATCCTAATTCCTCTTCCAACAGAATAGTAATGAAAATTGATA
GAAACACAGATTTCTTAGAATTATCAACGAAAAACGTTACGGCAGACGAG
GACCCAGAGAGCGGCGCCATTTTGAAAAAGGCGTCATTTATGGACCTAGA
AAATTCATCACCCATTAATACAAACAACGGTGAACCACCACACAAGAAAG
GGCGGAACAACATCCTAAATAACAACGAGGTTTTAACGCCCGTTGAAACC
ACCCAACACGCCCCAAATTACCGTGTTGACATGAAATTGAAAAGTCCGAG
CCCGACTGAGGATGATTATATAAAATCAGATAAAGTGCACACGCATCACG
GTCGTGTTACGCACTATTATCGCGATGAACCGAAACATGACATGCTTCTC
GCTGTCAAGGTAACTGCAACGGCAAAATTCATTCAAAATACACCTATTGA
CATTTTTGCTTAAAAGCTTCGTGAATTTAGGGTTGGGTTCGAGTTTGCCA
TGCTCGATTGTCGTCAGATGCTTGAATATCTGCATTAACATTCTCGCAGA
TACTAATATTTGACTGTCATCTAAACCTCGTAAACCCGATTAACGATCCC
TTGTTCTCGAAGTACTGCAGGTTTATTTGAAAGAAAATTCCGGCGAACGA
TCTTCTAAAAGTCCCTAACTTATTCTAGACGTTTATCTTTTTTTCTCGTA
CGGTAACACATAGTTTGGTTTTTACTCGCTAGTAGCAAACCCTGTGCGAC
AAGTTACACTTTTCTGTAACCCGAAATTGTCTGCTTCATATTGATTTTAA
TAATTTATTTTTTTTATTCAGCCTTATAAGGAGATGGTGACAACGGACCA
ATCAAGATCGAATTCACCGGCCCATCATCATAGATCGATGTATGTATTAT
TAAGCATCTGACTTGGAAAGTTACCCTCGGGCTTTGTTTTTTAAGATTTT
GCCTTCCTTTACCCTTTAGCTTTTTTGACTGTGCTAAATTTCCACCAAAA
CTTTCATTTTTCTCATCTCACGTTCAATTACTTAATCTTACCATTGCATA
ACAACCCCGGGGGGGGGTGCTTAGGCAAATGGAGGGCACGGTATGTGCCG
CCCTTAAGGGTACCTTTTTTGGACTTCCAAAGTCCCGCTAAGGGTCGGAA
AAATCAGGAAATCTAATTTCAGTCCCACTAAGGGTCGGAAAATTGGAGAA
TTTCAACTTTTTACCCCCTGAAAGATCAAAATTTGGTCAAATTTGGTCAA
ATTAATCCCGCTAAGGGTCGTGAAATTCCCAAAATTTTCCTTTGTTTTCT
CCTTTTTAGTCCCGGTAAGGGTCTAAAGTTCGAAAGTCAGCTCGCAACCC
TAGTACCCCCCGGGATAACAACTCTCTTTGTACTGGTTAGAACAAGCATA
TCATGTCAATGTCGATATATTTTTTATGATGGTGTGTAGGTGTAACTTCT
TTACCCCTGCGTGAGCCTTTTGATGTTTACTGATAGCGACATATAATTTT
CTCTGGTGTCCATGAGTAACATGGAGTCTAGGATAAAGGGACAAGCTGGA
GTTTTTACAAGCTCTTTCTTGATTTGGTTGGTCGTTAGCCTGTAATAAAA
CAATTTTGTTACTTTTTCTAAAGAACGAGTCATCTCTATTATCTTAAATG
ACCAATTAGTGAAGTACAAAAACTATATCTTATAAAAACTCCAGAACATC
TCAGGATAAACGGGGACGAGGTTGTGTTTAGGTAGCAGGTAGACCCTTTC
TACAAAAAAAAACAGGCAAATAACTGATTCTTCTATTGGTTTATTTTAGT
GGCGAGAGGCGTGGTGAAAAAAGAATGGATGAGCACGCCAGTAAGTTACA
TTCCATACAAGTACTTGGTTCTTGCTATTGCACGCCAATTATCTATACAA
AACCTAGAGATAACAAAAGTAAAAAAGTGAATACTTTGTATAATTTACTA
ACTCCCACTCTCAGAGTAAGACCTATAGATGCTTATTGTCCATGTAAAGT
GTATTTTTTCTATTTTATACTACCGTTGACGCTCTCTTATTCGACGTTGT
ACTATTCGATAGGCTCCCTTATTCGATGAAATTTAAATTCTCCGTCAATA
AGAAACTCTCATAAACGACGTTCTACTATTCGATAAGCTCCCTTATTCGA
TGAAAATCCGATTCCCCTTGAAGATCGAATTAGAGAGCGTCAACTGTATA
TCCTAACTTATTTTCACTTTTCTAGTCATTACGCGCTTGTTTGCCGATGG
TCGTTGTCTATGGCCTTCTTGTAATACCTCGTGTATGGATAAACACGATT
TTGTAAGGTAAGCAAATCTAAAGAACGATAACAATTATTAATGAAAGTTT
TTTGTTTCCTTTTCTATGAATTAGGAATTGTATCATCTTTTATCATATTA
ACACTATATTTTTCTGGATACTCATCTAACACAATCAAATTCCATAGGGT
AATCACTTTTTTTGTCATGTTTTCGCCTTTAATTTTGAATGAGATTCTAT
TTGGTAACTTAAAAAATGGTTACTAACGATTGAGTTAATCGAAATTCAGT
ACTCATCCACACCTGAAAATTGCAGTTGTTATTATCCATTGGAACTTGAT
TTTTACCAAATTTTCCCATGTTGACAGTCGTTACATGGAATTAAACGAAA
TAAAGAGATTTTTACAACCGATGAACGTTTTCCTTTACGATTTAGACACT
TAGATACAACCCATGCAATGGACGAAAAAGCAGCAGCTCAGGCTAGAGTT
CAGAAATATGCCGTCGAAGAGTTGGAGGAAAGGGTAAGATGTTTTTAGTT
TATCATCTTAGTATCTTAGACCATAAAAGGTTTCATGTTTACAACTTTTT
GTCTTATGCTTAACTTGAAACTTCATTCAATTGGAGATGTTTTCTCCAAT
TGAGTATGTATTGATTGCTTTTACTTTCCAAAAGAGGACTCAGGGTAATG
TAGAATAGATTTTATAAAGGCTTCTTTCATTCTTCCTTTTTAGTTATCAT
ATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAATACGCTTCT
GATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTCTCCACCACC
TCGATCAGGATCCGGACACCATCACCCAGTCAGTAACGGAGGTGTGGTCT
ACCTACCCTACCCGCCACCGCCACACCATATCCACGCCATCCCCACCCAC
GTACCCGATGATCGTGTCAGTTCACCTCATCACCGTGAAAGAGAAAGAGA
GCGTGAGAGAGAACCACGATCTCCACCTCAATCGAACTCGCCACGAAAAC
ATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCACTTACCGGCTCCA
CACTATTACCCAGTCCATCCAGCTTATCCAATCGGACGGCCCGTAGCTTT
AAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATGAGAGATACC
CACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATTAATACATCGACCA
GCTATTGAGGCATCAGCACACCCACCAGGTCCACCATTAACGCCCAAACA
AGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGGCAGCTATGG
TTGACATTGGGCATGGTAAGGAAGACATAGGTTATCGTGAGTTGACGTTC
TTCTCTTCTAATTTTTAACTCAGACCCCTTTTTTTAGAAGTTTCGTAAAA
TGAGGTTTTTCAAATTTTTTATATAAAACGATTCTCAAGTTTAAATTTTT
TTTACAAAGTCACAGTGACTCTATTTCGAGTTTTGTATTCTATTTGCAAG
TTCGATTTTAATTAGTCTCGTTATGCCGTAACATTTCAGTATCATTTAGA
ATTATGACCCTCTTCAATTCGTTCAAATACTAAAGATTAACTTTTTCCCC
CTTTTTTCACTATCCAGAACTTCGCACAAAGGGTAATCTATACCAAGACC
CAAACATCAGGCCACCTTACACGTATGCCTCACTTATTCGACAAGGTGTT
TTAGACTCACCTAATGGAGAATTGACTTTAAACGAAATTTACAACTGGTT
TATCAAAAACTTCGCTTTCTTCAGAAAGAACACTAGCACTTGGAAGGTTG
GTTTGAGTATTCATTTTTACGGTACAGGGAAGGAGGAACTATCTTTTAAG
GTTCAGAGATAAAATTTGCATGCTAAGAAATGGAGAAAATCTACAGTAGC
CTCTCGCGTATTCGAACTCCTATAATTCGAATCCTTCTACCATTCAAACT
AATTCTCAGCTCCCACCAAGGGAAACCCTCATAAACACTTTCTCTAGTTA
GTGAATCTCTCTGTAATCTGAACAAAGAATTAATTGGGCTCTTAACTGTA
AGATTTTTCATGGTATCATATATTTGACCGTATTATAAAAATTCTATTGT
ATAGAATGCCGTTCGACACAACTTATCGCTACACAAATGTTTTGTTCGAA
AAGAAAATCACAAAGGAGCTGTATGGACGGTCGATGATGTTGAATTCTTC
AGGAGAAGAATGACAAAACCAGGACTGTAAGTTCAATTTGAAATCAATAA
CGAACCAGGGGGTTCAGGGTTTCTTTTTAAACTTGTCACGTTTGTCCAAA
AATTGTTTAAGGAAGGGAAGCTTGTTTGTAAGCCGATTCACCACCAAAGA
CAACTTAAAATAATTTTTCAAAATTCATTCTGATTCAGACCACGAAGAGA
ATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAAGTGGTGGTG
AATATGTGACGGATCTTCCATCTATGGCCATGTCAAGAAAGGAAGATTCA
GAAGAAGATAATTCACCGCCACCTCCGCCCACGCAACAACATCACGCTCA
CGAAGAAAACGGTGAACAGTAAGTACAACCTGTAATTTGTCACACGCTTT
TGCATTAGAAGTTTGCGAAACTTGAGCCTTTTGAGTTCACAATTTTTTCG
ATCTTACTTTCCAACCAGTTCTACAATTGTTTGCAATGGTTTATGCCTAG
TCCTTTAGTATTCTTGAAACTTGACAGATCAAAATCTTGACAGGGGTCTA
TGAAATTAGCTCGTTTTATAGATTTTATTTCAAACATTCCGTCTTCGATA
ATGCTATTTATACCCATAATGCATCGTATAGAGAAAATAAGAACTGCAGT
GGATTGTAGATTTCGTTTCAATAATACATCACAGAATTTACTAGATTAAA
GCACGTGTTGAAATGATTGTTTCTCGTTTTTGTTTACAGAGAAAATTCGA
TGGCAATCAAAGAAGAACGAGAAGAATACCTCCAGCATGCGTAAGTCTAC
TTTGACCTTCCTTTTTATATATCAGAAATCCACCATTATGGATTAAAGCA
ACCGATTCGAAGAGATGATTGGTTAAGCGAATCGAATGTCTTCCATAATA
GTGGGGGTTAAGGGTTAGGGTTTACTGAAAACCACTACACGTTTTTTTTT
TTATTAGAACCTAGTTTACAAGAACATATAGGCTGAAATTCGTCGAAAAA
TTAAGAACATCTTAAGAACATGCCCAGCCTCCGTTTGGAAAAAAATGACA
AGAAACTACAATTTCTTCCTCTTTTTAAGCAGTTTTTAACCGAATTTAGG
GGTGGATCTTCAAAAGTCGAGTGTCAAATATTGTCTAAATTTTGCTAAAT
TTAAGTGCTCTTTATTTTGTATCATATTGTCGATTTACAGTAGTCTGAAA
AATTAATAACGCATTTAAGAACATTTTAGGCTGAAAATTGCTAAAAAAAT
AAGCACATCAGAGCTCGAACCGGTGATGGATTCCGGTCAAAGACAATCCT
ATTATTAAGAATTTTCTGTAGACTGGTTGCTGTAGAAATCTTTTCAATAA
TACTGTGTAATTATAGATTCTGAGCGGGACTACTTCCTGAAAATCAACAT
TTTGAGAGCAGTGGCGTTGTGGGAAAATTTTTCTGGAGGGGCCAAAGTCA
ATTTTTTTTAAATGGCGCCCCCCCCCCTCCAATTTTTCAAAGTGGTGTCC
CCACCCATCATTTTCTAAACTTTTACCAAATTCATTTGCCTAGGCATAAT
GAGGAAGGAAATATTTAGTGGAGAAAAGTAGATTTATCTTTGATGAATGG
AAAAGGGAAAAACAGGCCCCACCATGGTTGGGGCCGACTAGAAAATATTT
TTAAATCAACTGCCAAGATACCCTAAATCACTAAATAAAAATAGACAAAT
TTTACACTTGCTAGAGTGAAATGAAACTTAAAGAAACAATGTGTTATGCG
AGCGAAGCGAGCGAAAAAATAGATGTTTTATGATTTCAATATTGTTGTCA
GCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCAATATTGTTGTCAGCAGATTGGTCTTGG
GACGCAGTTAGCTTTACATTTAATAATGCTATATTGTACACAAAAAAAAC
TTGTAAATTAGCTAGATATCAAAAAAGTTACCACTTAACTGTATTGCGAG
CGAAGCGAGCGAAAAAAATTGCAATTATATTTANNGGGGGGGGCCATGGC
CCCCCCGGCCCCCCCTGCCACAACGCCACTGTTTGAGAGGTATTAATCTC
GGGATATTTCCCAGATTTCAGGATTTTTCCTCTTTGTAACCCTCAGAGGG
CGACTGAAATTAATACTATTATTCTTTTTTTTTTCTTTACAGAGATACAG
TGATGGTGACATCTTGAGAGTTTCAACAGTGTTGCAGTAACAATTATGGA
GACTGACAGTTGGAGTTGGTAGTACTTGACAATGAATTCAACTTCGAGAC
CCCTTTTTTGGAAGTTCGTTACTTAAATTTAGTACTAGCCCATGTTGTAT
GTTATTTTCTAATAATATTTATTTTATGGACTTTAGAGGATATAAATTTA
TCTCCTCGAATTTCTCGACAATCTCTCGAACTTGAAAACTATTTTCTTTT
TAGCATAGAACTTTTTTAAGTGGGGCAAAAATTTCTGTAGAACCTGTAGA
AATCTCAATTTTCAAGAGATACCTTTTTTTGTTACAGTAATCCTCCTTTT
AAAAACCTTTGTTTAGTATATTTTGTTTTA

Coding sequence (CDS) from alignment at scaffold_483:77882..85011-

>TCONS_00068369 ID=TCONS_00068369|Name=TCONS_00068369|organism=Clytia hemisphaerica|type=CDS|length=1851bp|location=Sequence derived from alignment at scaffold_483:77882..85011- (Clytia hemisphaerica)
ATGAAAATTGATAGAAACACAGATTTCTTAGAATTATCAACGAAAAACGT
TACGGCAGACGAGGACCCAGAGAGCGGCGCCATTTTGAAAAAGGCGTCAT
TTATGGACCTAGAAAATTCATCACCCATTAATACAAACAACGGTGAACCA
CCACACAAGAAAGGGCGGAACAACATCCTAAATAACAACGAGGTTTTAAC
GCCCGTTGAAACCACCCAACACGCCCCAAATTACCGTGTTGACATGAAAT
TGAAAAGTCCGAGCCCGACTGAGGATGATTATATAAAATCAGATAAAGTG
CACACGCATCACGGTCGTGTTACGCACTATTATCGCGATGAACCGAAACA
TGACATGCTTCTCGCTGTCAAGCCTTATAAGGAGATGGTGACAACGGACC
AATCAAGATCGAATTCACCGGCCCATCATCATAGATCGATTGGCGAGAGG
CGTGGTGAAAAAAGAATGGATGAGCACGCCATCATTACGCGCTTGTTTGC
CGATGGTCGTTGTCTATGGCCTTCTTGTAATACCTCGTGTATGGATAAAC
ACGATTTTGTAAGACACTTAGATACAACCCATGCAATGGACGAAAAAGCA
GCAGCTCAGGCTAGAGTTCAGAAATATGCCGTCGAAGAGTTGGAGGAAAG
GTTATCATATGAACGTTCAAGGCTGTCAGCCATGTTGGCACATTTGGAAT
ACGCTTCTGATAAAGGGTACGTTCTGCACAAGTCGGCTCATTCGGCTTCT
CCACCACCTCGATCAGGATCCGGACACCATCACCCAGTCAGTAACGGAGG
TGTGGTCTACCTACCCTACCCGCCACCGCCACACCATATCCACGCCATCC
CCACCCACGTACCCGATGATCGTGTCAGTTCACCTCATCACCGTGAAAGA
GAAAGAGAGCGTGAGAGAGAACCACGATCTCCACCTCAATCGAACTCGCC
ACGAAAACATTCTCACCATAAACCAGCCCCTGGCGGTCATTACCACTTAC
CGGCTCCACACTATTACCCAGTCCATCCAGCTTATCCAATCGGACGGCCC
GTAGCTTTAAAACGCGAATCGCCTGGAGACGAAAAAAGCCCTAAAGATGA
GAGATACCCACCGCCCGGATTGATTGCCGCCCACCCAGAGGAATTAATAC
ATCGACCAGCTATTGAGGCATCAGCACACCCACCAGGTCCACCATTAACG
CCCAAACAAGAAGGCGGATACCACCCTGTAAGGCGTCGTGGTGAGGCGGC
AGCTATGGTTGACATTGGGCATGGTAAGGAAGACATAGGTTATCAACTTC
GCACAAAGGGTAATCTATACCAAGACCCAAACATCAGGCCACCTTACACG
TATGCCTCACTTATTCGACAAGGTGTTTTAGACTCACCTAATGGAGAATT
GACTTTAAACGAAATTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCA
GAAAGAACACTAGCACTTGGAAGAATGCCGTTCGACACAACTTATCGCTA
CACAAATGTTTTGTTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGT
CGATGATGTTGAATTCTTCAGGAGAAGAATGACAAAACCAGGACTACCAC
GAAGAGAATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAAGT
GGTGGTGAATATGTGACGGATCTTCCATCTATGGCCATGTCAAGAAAGGA
AGATTCAGAAGAAGATAATTCACCGCCACCTCCGCCCACGCAACAACATC
ACGCTCACGAAGAAAACGGTGAACAAGAAAATTCGATGGCAATCAAAGAA
GAACGAGAAGAATACCTCCAGCATGCAGATACAGTGATGGTGACATCTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042667XLOC_042667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068369-proteinTCONS_00068369-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068369-exon-scaffold_483-1575043694:84603..85011TCONS_00068369-exon-scaffold_483-1575043694:84603..85011Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:84123..84190TCONS_00068369-exon-scaffold_483-1575043694:84123..84190Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:83172..83212TCONS_00068369-exon-scaffold_483-1575043694:83172..83212Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:82705..82786TCONS_00068369-exon-scaffold_483-1575043694:82705..82786Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:82229..82316TCONS_00068369-exon-scaffold_483-1575043694:82229..82316Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:81376..82018TCONS_00068369-exon-scaffold_483-1575043694:81376..82018Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:80916..81094TCONS_00068369-exon-scaffold_483-1575043694:80916..81094Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:80486..80607TCONS_00068369-exon-scaffold_483-1575043694:80486..80607Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:80144..80323TCONS_00068369-exon-scaffold_483-1575043694:80144..80323Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:79722..79772TCONS_00068369-exon-scaffold_483-1575043694:79722..79772Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1575043694:77882..78269TCONS_00068369-exon-scaffold_483-1575043694:77882..78269Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:84603..85011TCONS_00068369-exon-scaffold_483-1510915933:84603..85011Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:84123..84190TCONS_00068369-exon-scaffold_483-1510915933:84123..84190Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:83172..83212TCONS_00068369-exon-scaffold_483-1510915933:83172..83212Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:82705..82786TCONS_00068369-exon-scaffold_483-1510915933:82705..82786Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:82229..82316TCONS_00068369-exon-scaffold_483-1510915933:82229..82316Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:81376..82018TCONS_00068369-exon-scaffold_483-1510915933:81376..82018Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:80916..81094TCONS_00068369-exon-scaffold_483-1510915933:80916..81094Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:80486..80607TCONS_00068369-exon-scaffold_483-1510915933:80486..80607Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:80144..80323TCONS_00068369-exon-scaffold_483-1510915933:80144..80323Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:79722..79772TCONS_00068369-exon-scaffold_483-1510915933:79722..79772Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1510915933:77882..78269TCONS_00068369-exon-scaffold_483-1510915933:77882..78269Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:84603..85011TCONS_00068369-exon-scaffold_483-1491911889:84603..85011Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:84123..84190TCONS_00068369-exon-scaffold_483-1491911889:84123..84190Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:83172..83212TCONS_00068369-exon-scaffold_483-1491911889:83172..83212Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:82705..82786TCONS_00068369-exon-scaffold_483-1491911889:82705..82786Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:82229..82316TCONS_00068369-exon-scaffold_483-1491911889:82229..82316Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:81376..82018TCONS_00068369-exon-scaffold_483-1491911889:81376..82018Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:80916..81094TCONS_00068369-exon-scaffold_483-1491911889:80916..81094Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:80486..80607TCONS_00068369-exon-scaffold_483-1491911889:80486..80607Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:80144..80323TCONS_00068369-exon-scaffold_483-1491911889:80144..80323Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:79722..79772TCONS_00068369-exon-scaffold_483-1491911889:79722..79772Clytia hemisphaericaexon
TCONS_00068369-exon-scaffold_483-1491911889:77882..78269TCONS_00068369-exon-scaffold_483-1491911889:77882..78269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:77882..85011 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.92534	0.665942	0.974393	1.03832	15.5938	8.8831	11.4137	16.2148	7.164	3.40536	1.37704	5.30515	4.34552	2.20732	2.74233	6.6439	21.7676	15.4501	2.36797e-09	1.11153	12.0365	11.7368	4.5054	7.60957	7.45345	3.64269	10.3263	11.9088	1.34046	2.99227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR032354FOXP-CC
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00068369 vs. Swiss-Prot (Human)
Match: FOXP4 (Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.160e-39
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 2 
Query: 1166 AHPEELIHRPAIEASAHPPGPPLTPKQEG-----GYHPVRRRGEAAAMVDIGHGKEDIGYQLRTKGNLYQDPNIRPPYTYASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSLHKCFVRKENHKGAVWTVDDVEFFRRRMTK 1624
            + P+ L+H P    SA  P  PL P   G     G  P RRR               I  +L      Y++ ++RPP+TYASLIRQ +L++P+ +LTLNEIYNWF + FA+FR+NT+TWKNAVRHNLSLHKCFVR EN KGAVWTVD+ E+ +RR  K
Sbjct:  403 SFPDGLVHPPT---SAAAPVTPLRPPGLGSASLHGGGPARRRSSDKFC-------SPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPK 550
The following BLAST results are available for this feature:
BLAST of TCONS_00068369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXP41.160e-3950.63Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 P... [more]
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