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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068399 ID=TCONS_00068399|Name=TCONS_00068399|organism=Clytia hemisphaerica|type=transcript|length=5243bpRun BLAST on NCBI protein sequence of TCONS_00068399-protein >TCONS_00068399-protein ID=TCONS_00068399-protein|Name=TCONS_00068399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1281bp MIYKMLILKLLLIVSCWIDHAALLGIPKITEMSIVKPPAIVGNSVLTLLCRun BLAST on NCBI transcript from alignment at scaffold_483:507854..527227- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068399 ID=TCONS_00068399|Name=TCONS_00068399|organism=Clytia hemisphaerica|type=transcript|length=19374bp|location=Sequence derived from alignment at scaffold_483:507854..527227- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_483:507854..527227- >TCONS_00068399 ID=TCONS_00068399|Name=TCONS_00068399|organism=Clytia hemisphaerica|type=CDS|length=3846bp|location=Sequence derived from alignment at scaffold_483:507854..527227- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068399 vs. Swiss-Prot (Human)
Match: L1CAM (Neural cell adhesion molecule L1 OS=Homo sapiens GN=L1CAM PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 4.654e-50 Identity = 238/1064 (22.37%), Postives = 413/1064 (38.82%), Query Frame = 1
Query: 181 LTLLCKATGEGPIKVRWM-----FKGKTATENNFFESAKDAEGTSTLRVFDVSLEHSGIYTCTAENRFGKVFNEKEVVVYKKGKFSPPHSREDPVKTIQATVGVPLTIECPPHEEGIGYKIVWGS-----------LPLGGNPLLWLTGVTPLKNAYFGNHGEFHVQALTADLIKLIQDLGGVSCILYLDNAVVSNQINIDIGSQDINKAPVDNPPKMGRKLPANTNATVGKDRQVDLTCGADGYPYPKITWYKDGVSIEVLNEKKDSNFTVTGNGMILRINPVTSRAAGKYKCVAENFLGKEENEGTLTVNSVPKFVKGQELQIRYDVIHDQKLVLSCRGEGTPSVSYQWYHNGSIV---TNNERYKLDGGDLIIKSAGFDHIGLYMCLIRNFVGLDVQPTYVIVEATPPTLIKGMDDPKYIFKGEDQELKCSFRSAPAPSVTW--------QKDGRDISSANTGSLILKSVSDESSGRYNCTATNVEGXXXXXXXXXXXXKTKITNAPATLKTKVGTKMLELYCNAVYETQLLDVKFQWLRKGKPFES---NDRVYLERRLEGPKRVLFLTDIEMSDAGEYKCRVFTHVKGDEGNIISEDVKTGSVAVIGKPPSPSNLAFSGNCSDTDSDIEITWEQRNNFGQSISTYIIEYGDRNADEDEWF---KYKGNMVISEDKLSIPVKNLPGSTDLKFRLTAVTYY-ESETFKSDSVVIVPDSCSTPAGAPAAWVATGLRTNNKKAGQLVVEWDEPADIYKKGPNFCVEVTYQ-KLPDGEIKTVCIKDGNNFVLEDAGEGEKYSISVRGKNDEGSGPETKKVLTSGA---PAITGKPENLQVKYDANITFNWDKVQ------HATKYNFYYQEDASSXXXXXXXDTSSETKVTVTNNQTVLIPKDLASQTSYSFYVKAANDWMEGDASETQTFQTKPSAPNTPSNADIDIIGH-AVQVKWDPPKRSKPEVTGYVIRYK---KKGSGTYFVKECDADCRDMFLTDLEPFAYYTVELQAKSSAGLGDPIIFDGLVVSSXXXXXXXXXXXYVNENATIINVNFMLPEEG 3228
++L C+A+G+ ++ RW FK K ++S T T + + GIY C A N+ G + E+ + +G P ++ VK ++ G + + C P +I W + + +G N L+ V N H ++ A +IQ + ID+ + N +D P++ ++++ + + + L C A+G+P P I W + + T + L++ V G+Y+C+AEN LG + +TV + P ++ + + + L C+ +G P W NG V +++Y++ G LI+ + + C RN GL + Y+ V P ++ + +G L C AP PSV W +D R AN G+L ++ + +GRY C A N + + +A + T+IT P + K G++ + C A ++ L W G+ + +D+ ++E L + ++ SD G Y C V E +++ + + V+G P L S T S + ++W + I Y IE+ D+ ++W+ K GN + KLS V FR+TA+ Y E V+ P++ P P G T N +V+ W + P V ++ + G + + D V+ + Y I V+ N +G GPE + + P + E +++ + + W V H YN Y + S R+ +R + V V N T +I L +SY V+A N G ASE TF T P P ++ + ++ ++W PP +TGYV+ Y + G G D + R LTDL P Y +LQA + G G+ I+ +G ++ EN ++++ +P+EG
Sbjct: 53 ISLKCEASGKPEVQFRWTRDGVHFKPKEELGVTVYQSPHSGSFTITGNNSNFAQRFQGIYRCFASNKLGTAMSH-EIRLMAEGA---PKWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIKQDERVTMGQNGNLYFANVLTSDN-----HSDYICHAHFPGTRTIIQ------------------KEPIDLRVKATNSM-IDRKPRLLFPTNSSSHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPA------DRVTYQNHNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTVEAAPYWLHKPQSHLYGP---GETARLDCQVQGRPQPEVTWRINGIPVEELAKDQKYRIQRGALILSNVQPSDTMVTQCEARNRHGLLLANAYIYVVQLPAKILTADNQTYMAVQGSTAYLLCKAFGAPVPSVQWLDEDGTTVLQDERFFPYAN-GTLGIRDLQANDTGRYFCLAANDQNNVTIMANLKVKDATQITQGPRSTIEKKGSR-VTFTCQASFDPS-LQPSITWRGDGRDLQELGDSDKYFIE------DGRLVIHSLDYSDQGNYSC-----VASTELDVVESRAQ---LLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDIEFEDKEMAPEKWYSLGKVPGNQTSTTLKLSPYVH-------YTFRVTAINKYGPGEPSPVSETVVTPEAA--PEKNPVDVKGEGNETTN-----MVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSD-PFLVVSNTSTFVPYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRH--IHKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEF-TFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLRDPELRTHNLTDLSPHLRYRFQLQATTKEGPGEAIVREGGTMALSGISDFGNISATAGENYSVVS---WVPKEG 1041 The following BLAST results are available for this feature:
BLAST of TCONS_00068399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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