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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068402 ID=TCONS_00068402|Name=TCONS_00068402|organism=Clytia hemisphaerica|type=transcript|length=1752bpRun BLAST on NCBI transcript from alignment at scaffold_483:518271..527227- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068402 ID=TCONS_00068402|Name=TCONS_00068402|organism=Clytia hemisphaerica|type=transcript|length=8957bp|location=Sequence derived from alignment at scaffold_483:518271..527227- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068402 vs. Swiss-Prot (Human)
Match: CNTN2 (Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-33 Identity = 139/559 (24.87%), Postives = 227/559 (40.61%), Query Frame = 1
Query: 139 MSIVKPPAIVGNSVLTLLCKATGEGPIKVRWMFKGKTATENNFFESAKDAEGTSTLRVFD-VSLEHSGIYTCTAENRFGKVFNEKEVVVYKKGKFSPPHSRE--DPVKTIQATVGVPLTIECPPHEEGIGYKIVWGSLPLGGNPLLWLTGVTPLKNAYFGNH--GEFHVQALTADLIKLIQDLGGVSCIL--YLD---NAVVSNQINIDIGSQDINKAPVDNPPKMGRKLPANTNATVGKDRQVDLTCGADGYPYPKITWYKDGVSIEVLNEKKDSNFTVTGNGMILRINPVTSRAAGKYKCVAENFLGKEENEGTLTVNSVPKFVKGQELQIRYDVIHDQK------LVLSCRGEGTPSVSYQWYHNGSIVTNNERYKLDGGDLIIKSAGFDHIGLYMCLIRNFVGLDVQPTYVIVEATPPTL-IKGMDDPKYIFKGEDQELKCSFRSAPAPSVTWQK------DGRDISSANTGSLILKSVSDESSGRYNCTATNVEGXXXXXXXXXXXXKTKITNAPATLKTKVGTKMLELYCNAVYETQLLDVKFQWLRQGKPFE 1746
+S++ P VL L C+A P RW G TE ++ L + + + +G+Y C A N G V + + ++ + F S+E DPVK + GV L P H G+ Y+ + P P +F + G ++ A DLG SC+ ++D +V S +++ ++D P + + PA T A VG+ QV L C A G P P+I W K S+ + L+I V+ G Y+C AEN G++ +G + V + P+++K VI D + L C G P + +W NG + + R ++ GDL + G+Y C+ N G + V+A P + + +G + + C R+AP V W K + ++ G+LI++++S G+Y C A N G A S + TKIT AP++ +G L L C+A ++ +D+ F W P +
Sbjct: 44 LSVLFPEESTEEQVL-LACRARASPPATYRWKMNG---TEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFG---FLQEFSKEERDPVKAHEG-WGVMLPCNPPAHYPGLSYRWLLNEFP----------NFIPTDGRHFVSQTTGNLYIARTNAS------DLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFA----PSIKARFPAETYALVGQ--QVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPT---------LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLK---------VISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQALAPDFRLNPVRRLIPAARGGEILIPCQPRAAPKAVVLWSKGTEILVNSSRVTVTPDGTLIIRNISRSDEGKYTCFAENFMGKANSTGILSVRDATKITLAPSSADINLGDN-LTLQCHASHDPT-MDLTFTWTLDDFPID 552 The following BLAST results are available for this feature:
BLAST of TCONS_00068402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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