TCONS_00068424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068424
Unique NameTCONS_00068424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068424 ID=TCONS_00068424|Name=TCONS_00068424|organism=Clytia hemisphaerica|type=transcript|length=683bp
CCGGAATCAATGCAAAGGTTCATCAAGGAGAATTTCATAATTTATGTTGA
AGTGAGTGCTTCATCTTACGTCATAAATGGAATAATTAATGGAATTGTAG
TGTTAAGAATCAACCGAGCcatcaaaagaaagattaaaGAGCTACAACGG
AAACTTCGAGGTCGgttatttgaaaatcaaatagtGGCTGTACAGGAAGG
CCCAGCTGTCTCCCAAGGTNAAAGAAAGATTAAAGAGCTACAACGGAAAC
TTCGAGGTCGgttatttgaaaatcaaatagtGGCTGTACAGGAAGGCCCG
GCTGTCTCCCAATGCAATTCCTCATCTAGCAGCGAATCCAATGGTCAATC
TACAAACGAAAGTAAGGTGTGATTTGGAAATTATTGTAAGCAATGAAAAA
TCTCGTACCCAAAACCAATTGcaccattttttgattttactacTGATGCA
ATGGACTTAATACAAACGCGAGTCATGAAAAAGCGAactaacccagctgg
cacacaacgttgtttcaacgttcatctaacgttatatggacgttgtgaac
gttaaataaacgttgcaAAAGCGAACTAAAGACTAGGAATGAGTTTAAAC
AATGGATAGTTAAAATGAGCAAACCCAATGTTAGTATacaaacaccccct
tctcacagacccactgggaccctttcccactgg
Run BLAST on NCBI

protein sequence of TCONS_00068424-protein

>TCONS_00068424-protein ID=TCONS_00068424-protein|Name=TCONS_00068424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
PESMQRFIKENFIIYVEVSASSYVINGIINGIVVLRINRAIKRKIKELQR
KLRGRLFENQIVAVQEGPAVSQGXRKIKELQRKLRGRLFENQIVAVQEGP
AVSQCNSSSSSESNGQSTNESKV
Run BLAST on NCBI

transcript from alignment at scaffold_483:473896..474578

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068424 ID=TCONS_00068424|Name=TCONS_00068424|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at scaffold_483:473896..474578 (Clytia hemisphaerica)
ccagtgggaaagggtcccagtgggtctgtgagaagggggtgtttgtATAC
TAACATTGGGTTTGCTCATTTTAACTATCCATTGTTTAAACTCATTCCTA
GTCTTTAGTTCGCTTTtgcaacgtttatttaacgttcacaacgtccatat
aacgttagatgaacgttgaaacaacgttgtgtgccagctgggttagtTCG
CTTTTTCATGACTCGCGTTTGTATTAAGTCCATTGCATCAgtagtaaaat
caaaaaatggtgCAATTGGTTTTGGGTACGAGATTTTTCATTGCTTACAA
TAATTTCCAAATCACACCTTACTTTCGTTTGTAGATTGACCATTGGATTC
GCTGCTAGATGAGGAATTGCATTGGGAGACAGCCGGGCCTTCCTGTACAG
CCactatttgattttcaaataacCGACCTCGAAGTTTCCGTTGTAGCTCT
TTAATCTTTCTTTNACCTTGGGAGACAGCTGGGCCTTCCTGTACAGCCac
tatttgattttcaaataacCGACCTCGAAGTTTCCGTTGTAGCTCtttaa
tctttcttttgatgGCTCGGTTGATTCTTAACACTACAATTCCATTAATT
ATTCCATTTATGACGTAAGATGAAGCACTCACTTCAACATAAATTATGAA
ATTCTCCTTGATGAACCTTTGCATTGATTCCGG

Coding sequence (CDS) from alignment at scaffold_483:473896..474578

>TCONS_00068424 ID=TCONS_00068424|Name=TCONS_00068424|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_483:473896..474578 (Clytia hemisphaerica)
TCACACCTTACTTTCGTTTGTAGATTGACCATTGGATTCGCTGCTAGATG
AGGAATTGCATTGGGAGACAGCCGGGCCTTCCTGTACAGCCactatttga
ttttcaaataacCGACCTCGAAGTTTCCGTTGTAGCTCTTTAATCTTTCT
TTNACCTTGGGAGACAGCTGGGCCTTCCTGTACAGCCactatttgatttt
caaataacCGACCTCGAAGTTTCCGTTGTAGCTCtttaatctttcttttg
atgGCTCGGTTGATTCTTAACACTACAATTCCATTAATTATTCCATTTAT
GACGTAAGATGAAGCACTCACTTCAACATAAATTATGAAATTCTCCTTGA
TGAACCTTTGCATTGATTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042697XLOC_042697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068424-exon-scaffold_483-1491911889:473896..474578TCONS_00068424-exon-scaffold_483-1491911889:473896..474578Clytia hemisphaericaexon
TCONS_00068424-exon-scaffold_483-1510915933:473896..474578TCONS_00068424-exon-scaffold_483-1510915933:473896..474578Clytia hemisphaericaexon
TCONS_00068424-exon-scaffold_483-1575043694:473896..474578TCONS_00068424-exon-scaffold_483-1575043694:473896..474578Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068424-proteinTCONS_00068424-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:473896..474578 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.174485	0	0.340817	0	0	2.17407	1.98077	1.40583	2.27466	0.649391	1.30952	0.206083	0.21372	0.0879932	0.278328	0.173823	0.118168	0.163575	0.17288	0.0761019	0.334067	0.174652	0.203371	0.16269	0.288187	0.322501	0.117123	0	0.0905655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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