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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068482 ID=TCONS_00068482|Name=TCONS_00068482|organism=Clytia hemisphaerica|type=transcript|length=3241bp
ggcccccccccccccccccagtggaccttcaattcaatcaaattttttcc
ccaaattcacgcattcccGCAacattttttcgcaattcacgcaatttttg
ttcacgccCAATTCACGCATTATAATATAACTTTATTTTATAGTTTCAAG
ATGAGTACCATATGATAAATCAATTGATTTATGTGCTTTTCCAAGTAATA
CCTAACTTTTCTTTTCTAAGCAATTTTGAACTTATGTGGGAGAAATTTTC
ATCAACTccattttccaagaattttaaACTCTTCAATTTTGATTACCAGG
AAAACTTATTACTCACTGACCACGCGGGATTATTTGCGTCATTTGACAAC
CAGCACAAAGTAAAGGAGGGGCCCTGAATTAGGatgattaaaatgttttt
ctcagAAAGAGAGATTTCATCAAATAATCAACGCCGGCGTATAAAATTTT
CTGAAGGGAGTGCTGCAGACAAGTCGTTTCGATAAAAGACCCTCCTTTCG
TTTGTTAAAGATATAGtggaaatatttaacaatgaGTACCTTTAAGGTTC
TTGCCTATGGAATGGGAGCCTCCAGGTCAGcattttaatcgtttttttAA
GATAATCATGTTTTACATCTTTTACAATTTACAAACTCCCGTTCCGTTCT
TTGGATTGGATTCTGTGTCAAGggaattattttgattttggttcCTCTGC
TCTATCTACTTTGATATGATAGTCTATAAGAAGGCTCTTAGATACAAGGA
AACCTTTTTCTTTAGGCacttctttttcagttttcttCGCTTTCTTTAAT
CCTCCTTCTGGCACATATTCTTCCATCAAGATATTCACTCATTTAGAAAT
TCGATATCCTTTTGAAATGTCTTTCAACTCGAGAGTATTAAGGAAAAAAG
GGACGTTTTAAATTCATGTCTTCACCAGCCGGTCTCATCATAAGATGTTA
CCCCCTTTGCTTTTCCTTTTAACTTTCAAAAAGCAAAATACTTGTGAAAA
TATTAAATGAAAACCAAAAACGTTTCTCATACTAAAAAGCCTTCACCTAC
ACACCATATTCTACGCATTCTAGAATTTAAGGCCATATTTTTATACAAGG
TCTGAGTAGGAGATAAATCGCTAAAGATGGCGACGATTTAGACTTTCTTT
TTCAGAGGACTGTAGTTTTTCGATGTAAGAAGgatataaaaaatttgaat
tcatatttaaaaacaaaagatgtTAAAAGTAGGTTTCTACTTCATTCTTA
TTCATATCCGCTATTTTATTCGGATTCCCAATATTTCGAGTTCTCGAGTC
CACTCAGATGAACGTCGTTTCGTTTTTTGCTCTCCTTTTTCTGTTGCAAA
GAGAAAGATGATAATCGTTGTTTTGACTCTGCCAAATATTCTTAAATACA
CTTCTGATTAGCCCGAAAAATACACAGAGTATAGATTTCATTCCCTTTGC
ATACATTTAGATGACTTAACCTATTTTcccactttttctttttcaaagta
aaatctAATACAAGCAGCTTTTTACAAAAAACCTGGTGGGTACAAAGATT
TGCAGTGTTGCCGTCTTCTGCGCTCTTTCTGTGTCAGCTTATTGTAAGTT
TGTGCATTTTTAaccaaaatgactttttttcttgaatATGTATCAACTGA
TAGCCATTTATATATCAGTGTTGTTTTGGGACTGGGTAGATCAGACTCAG
CAGTTACCAAATATTAACAGGGAAAGaaagtttcaaacaaaaaaaggcTT
AACTTGTAATGTACTCTCAGTTGCCTGATAAACAGGGTGATCAGAATTTT
TTCTTTtggggggggggggttgggttGGAAAAATCGTAAACAAATTACAA
ATTTTCATAAAGGGGGCATGATACCTCTAAATACCCACAAAATAAGGTAA
TTTTAGACTAAAACCTGGCTATTTCGAGCAAACGTATACTTgttgaaatt
ttagaaataaacAGTAATAAGGTCCGAGGGTTtgggaaaaaaaatcaaac
aaataaaaaatggtGGGAGGGCGTTTATTAGACACCCTAAGGGGGTCAAG
CATGGGGTctcgtgacatcttttttacaacctagccatttttagtctatt
ccaaaaaaactgtatattacaagatatttaacagccgcttgaagttcaga
aacataccgacgtcagtaaCGATCAACACAAGATTTGACGTCGaatcaca
gtagagctgacagttagttggtcttaaagcggctgtatttctttgtgtgt
tttagtcagagagttgttgttgtaatacattttttgctcagaatttcatg
ctctatcagatggtaccaatcattttcgtttattttgacttttgagaatc
agctatttctctaccccttattttcccctgcagttttgcctatggcctca
ctattttggtcataaaaagttttcccgggcctaatccgcgtccagcctct
caaaatattttgtaatatactgttctttggaatacaCTAAAAATTATAAG
GTCGTacaaaagatgtcacggaaccccaggATAGGCCCCCTACTACCCGA
GAGTAGTGTTACCGAAATAAGTCAACCCTATTGATTTCATCGAAGTTTTC
TATCTGCTAATTTAATAGCAGTGTGCTTCACTTAAGGTATCATTGGAGGG
AGAGAAACGTGTCCACTTTCCAAGAAATTTACCAATTATTAAAgccttat
aaaaactccatctcatctgccaAAAGAGGATAGAAGTATACTTTAGCATT
ACATATGCcaatttttcgcaaatttgagcctcggtatgcttataaacgtt
atgtaTATAGGAAAGAGTGTGAAGCCCCTCACCTTTTTCTAGTGTTCGAA
ATAACTTTTTGGTGATTTCTTTCTCCAGGCTTGGAAAACACGACCGAAAA
TAGACAAGCAATATATGACGTCGCACAAGTTATTGCCTTACCCTTTGTAA
GTTAGTTACCTTTTGTTCGATCAAGCTACGAAAGACAACGACGTCGCCCT
TCTTCGGTTGTCCAAACCTATCGATTTTCAGAAGACCCCTGGCGTGTTAG
CAATCAGCCTTCCACTATCAGAAGCACGGAACGAATAGCGTTGTTTCAGG
ATGGGGATTTAGACAGATTCGTCGAATGAGTGATACCCTCCAATAATACA
CCATGCCTATCTTCGAACGCGACGTTtgcaaaaatttcatgaaagaaagt
taattctCAAGCGCCTTTTCTTGTTGACATGACGACGTGAA Run BLAST on NCBI transcript from alignment at scaffold_485:140553..146615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068482 ID=TCONS_00068482|Name=TCONS_00068482|organism=Clytia hemisphaerica|type=transcript|length=6063bp|location=Sequence derived from alignment at scaffold_485:140553..146615+ (Clytia hemisphaerica)
ggcccccccccccccccccagtggaccttcaattcaatcaaattttttcc
ccaaattcacgcattcccGCAacattttttcgcaattcacgcaatttttg
ttcacgccCAATTCACGCATTATAATATAACTTTATTTTATAGTTTCAAG
ATGAGTACCATATGATAAATCAATTGATTTATGTGCTTTTCCAAGTAATA
CCTAACTTTTCTTTTCTAAGCAATTTTGAACTTATGTGGGAGAAATTTTC
ATCAACTccattttccaagaattttaaACTCTTCAATTTTGATTACCAGG
AAAACTTATTACTCACTGACCACGCGGGATTATTTGCGTCATTTGACAAC
CAGCACAAAGTAAAGGAGGGGCCCTGAATTAGGatgattaaaatgttttt
ctcagAAAGAGAGATTTCATCAAATAATCAACGCCGGCGTATAAAATTTT
CTGAAGGGAGTGCTGCAGACAAGTCGTTTCGATAAAAGACCCTCCTTTCG
TTTGTTAAAGATATAGtggaaatatttaacaatgaGTACCTTTAAGGTTC
TTGCCTATGGAATGGGAGCCTCCAGGTCAGcattttaatcgtttttttAA
GATAATCATGTTTTACATCTTTTACAATTTACAAACTCCCGTTCCGTTCT
TTGGATTGGATTCTGTGTCAAGggaattattttgattttggttcCTCTGC
TCTATCTACTTTGATATGATAGTCTATAAGAAGGCTCTTAGATACAAGGA
AACCTTTTTCTTTAGGCacttctttttcagttttcttCGCTTTCTTTAAT
CCTCCTTCTGGCACATATTCTTCCATCAAGATATTCACTCATTTAGAAAT
TCGATATCCTTTTGAAATGTCTTTCAACTCGAGAGTATTAAGGAAAAAAG
GGACGTTTTAAATTCATGTCTTCACCAGCCGGTCTCATCATAAGATGTTA
CCCCCTTTGCTTTTCCTTTTAACTTTCAAAAAGCAAAATACTTGTGAAAA
TATTAAATGAAAACCAAAAACGTTTCTCATACTAAAAAGCCTTCACCTAC
ACACCATATTCTACGCATTCTAGAATTTAAGGCCATATTTTTATACAAGG
TCTGAGTAGGAGATAAATCGCTAAAGATGGCGACGATTTAGACTTTCTTT
TTCAGAGGACTGTAGTTTTTCGATGTAAGAAGgatataaaaaatttgaat
tcatatttaaaaacaaaagatgtTAAAAGTAGGTTTCTACTTCATTCTTA
TTCATATCCGCTATTTTATTCGGATTCCCAATATTTCGAGTTCTCGAGTC
CACTCAGATGAACGTCGTTTCGTTTTTTGCTCTCCTTTTTCTGTTGCAAA
GAGAAAGATGATAATCGTTGTTTTGACTCTGCCAAATATTCTTAAATACA
CTTCTGATTAGCCCGAAAAATACACAGAGTATAGATTTCATTCCCTTTGC
ATACATTTAGATGACTTAACCTATTTTcccactttttctttttcaaagta
aaatctAATACAAGCAGCTTTTTACAAAAAACCTGGTGGGTACAAAGATT
TGCAGTGTTGCCGTCTTCTGCGCTCTTTCTGTGTCAGCTTATTGTAAGTT
TGTGCATTTTTAaccaaaatgactttttttcttgaatATGTATCAACTGA
TAGCCATTTATATATCAGTGTTGTTTTGGGACTGGGTAGATCAGACTCAG
CAGTTACCAAATATTAACAGGGAAAGaaagtttcaaacaaaaaaaggcTT
AACTTGTAATGTACTCTCAGTTGCCTGATAAACAGGGTGATCAGAATTTT
TTCTTTtggggggggggggttgggttGGAAAAATCGTAAACAAATTACAA
ATTTTCATAAAGGGGGCATGATACCTCTAAATACCCACAAAATAAGGTAA
TTTTAGACTAAAACCTGGCTATTTCGAGCAAACGTATACTTgttgaaatt
ttagaaataaacAGTAATAAGGTCCGAGGGTTtgggaaaaaaaatcaaac
aaataaaaaatggtGGGAGGGCGTTTATTAGACACCCTAAGGGGGTCAAG
CATGGGGTctcgtgacatcttttttacaacctagccatttttagtctatt
ccaaaaaaactgtatattacaagatatttaacagccgcttgaagttcaga
aacataccgacgtcagtaaCGATCAACACAAGATTTGACGTCGaatcaca
gtagagctgacagttagttggtcttaaagcggctgtatttctttgtgtgt
tttagtcagagagttgttgttgtaatacattttttgctcagaatttcatg
ctctatcagatggtaccaatcattttcgtttattttgacttttgagaatc
agctatttctctaccccttattttcccctgcagttttgcctatggcctca
ctattttggtcataaaaagttttcccgggcctaatccgcgtccagcctct
caaaatattttgtaatatactgttctttggaatacaCTAAAAATTATAAG
GTCGTacaaaagatgtcacggaaccccaggATAGGCCCCCTACTACCCGA
GAGTAGTGTTACCGAAATAAGTCAACCCTATTGATTTCATCGAAGTTTTC
TATCTGCTAATTTAATAGCAGTGTGCTTCACTTAAGGTATCATTGGAGGG
AGAGAAACGTGTCCACTTTCCAAGAAATTTACCAATTATTAAAgccttat
aaaaactccatctcatctgccaAAAGAGGATAGAAGTATACTTTAGCATT
ACATATGCcaatttttcgcaaatttgagcctcggtatgcttataaacgtt
atgtaTATAGGAAAGAGTGTGAAGCCCCTCACCTTTTTCTAGTGTTCGAA
ATAACTTTTTGGTGATTTCTTTCTCCAGGCTTGGAAAACACGACCGAAAA
TAGACAAGCAATATATGACGTCGCACAAGTTATTGCCTTACCCTTTGTAA
GTTAGTTACCTTTTGTTCGATCAAGCTACGAAAGACAACGACGTCGCCCT
TCTTCGGTTGTCCAAACCTATCGATTTTCAGAAGACCCCTGGCGTGTTAG
CAATCAGCCTTCCACTATCAGAAGCACGGAACGAATAGCGTTGTTTCAGG
TAAGATAGTCATTCCCATTTAATAGATGTATTTCAACACTGTATTCATCC
ACTAAAGTCATTTtcttacagtcaactctctctaattcgaacctctacaa
tTCGATGTAAGACAATTCGTCGCCTTAGCTGGAGAGTAGTGCGAAACGCC
TCCATGATTCGAATTTCTTTACTACTTCCacagaaaaaaatgatcttATC
CCAAGGTtggaactttttatttttccgcccCGGATATTTGTAACTTTCCG
ACCCGGAAAATGCCATGGGATCGTGAAACACCCACCAAGCTAAATTCCGT
GTTGGAAAATTTTTAGTTTCCAAGGTGCGAAATCTTCTAATTCCGACTCG
GAAAACAAATTACTAGAAAATTCAAAGGTTGTATTTCGTCAAAACCCGGC
AAGAAAACCGTGATTTCCAATGTAAGGTTTTTGAAAATGCGGGTTGGAAA
AAGTGGATATTCCAGACATTGTCAATATTATTCTGAATATTCATATTGGA
AAAAGCCCGAAACGCAAGGTCGGAAGTTTGGATATCACACATTTTCCAAG
TTACGAAATTGTCAAATTCCGGTAAGAAAACAGTGATTTCCAACGTAAGG
ATTTGAAAATGCGGGTCGGAAAAAGTTGATATCCCAGacattgtcaaaaa
tattttgaataattatatTGGAAAAAGCCCGAAACGCAAGGTCGGAAGTT
TGGGNCCAGacattgtcaaaaatattttgaataattatatTGGAAAAAGC
CCGAAACGCAAGGTCGGAAGTTTGGGTATCACACATTTTCCAAGTTGCGA
AATTGTCAAATTCCGGTAAGAAAACAGTGATTTCCAACGTAAGGTTTTGA
AAATGCGGGTCGGAAAATAGATAGTCGATTTAAATAGAAAATGCTCTGAC
CCatcaaggttggaaatttgaaaaatttgcagCTATCGTAAAGTCGATGA
TGACCTttataaagaaaattgatatgatTGGAAATTAAGCTAAATTCATT
TAATTAAGAAATGGCTAAAAATAAGGTAGATCGGAAAAATCTACTCATTA
AATTTTCAACGTTGTatttaatttagaaatattattttcaattagaATTA
AAAAGTTATGTAACATTagcataaataaaaaatcttatcaGATTAGTTAG
CAAAAATAATACATCTTGATTAATAACATACAATGTGGTGTAGAAATTTA
TAAATATTAGCTTCAATTAGAATTAAAAAGGTATATGTAACACAAgcatg
aataaaaaaaatcttatcagATTAGTTAgcaaaaataataaatcttGATT
AATAACATACAATGAATGTGGCGTAGAAATTTATAAATATTAGCTTCAAT
TAGAATTAAAAAGGTATATGTAACACAAgcatgaataaaaaaaatcttat
cagATTAGTTAgcaaaaataataaatcttGATTAATAACATACAATGAAT
GTGGCGTAGAAATTTATAAATATTAGCTTCAATTAGAATTAAAAAGGTAT
ATGTAACACAAgcatgaataaaaaaaatcttatcagATTAGTTAgcaaaa
ataataaatcttGATTAATAACATACAATGAATGTGGCGTAGAAATTTAT
AAATATTAGCTTCAATTAGAATTAAAAAGGTATATGTAACACAAGCATAA
ATAAACAAATCTTGATTTATAACATACAATGTGGCGTAGACAAATACTta
caacattcacaaaaaacaaaataacaTAACAAAGCTTGACGATTCATAAA
GAGATAATGTTGTACACATCTATCATTTAAATTGCAACGAAATTAGACTA
ATGAATATACGAGAAAAATGCGAAGGAATGttgtaaaatttaaaatggtT
CAAAGACACGAAAAGTTTAAACAAAGAGAGTACATAAAAGATTATTTACA
ATTATTTTCTAAATTAGTTAGTCTTCTGCCCTTTCCAATCCACAAACACA
ATAACATTGTCTTTGTCATCGACTGGTGTGTCGATGACCGCAGCCAAGCG
CTTGTCTATAACTGCCTTGGCAAATTCTTGCACTGCAGCTTTATCCTTTA
GGGTCGGGTTCAGTCTTATGTCCAAATCAAACGCCGCTTGGTTTATGACT
GAACGCTTCAGTTTGCTTACTTGACAGTAAATTCTTGCCACCCCATCTAG
GTCTTTTTCACTTAAAtctaaaatcaagaaaaagaatgaattaaaacatt
gaaaaaaaaaacaatcggTAAAAATTCTACTTTATTACATGTATTCCATA
ATATTGGACTGCAAAACGTTTTTCACACAGTAGAAAATTAGAAGAATAAC
GCACCTTTTAAAGGCACTTCCTTGGGTTTGCCTGATCTCTTCTGTGTTTG
TGTAACTAAAAAAAgcagtgaaaaaattaaatatgaaataaaatgttGGC
ACAACAAAAAAATACTTGTTTTTGATACTAAATTTATTACAAGCAGTTAC
AAGACCCATTCTATTGATTTAACAGTTTAAAAGAGAGTAGTTGTGACAAT
TGCAGAACAACTTACAACTAATATCATAAGCAGATTCACTTTCCACATTC
TTAGGCGGAGGAGTCTAAAAAGGAAACAAAGAAAGCATGTATTTATATAA
GAAAAGCAAAGTAACAACCATGACAGTCAGCAGGTGTCTGCAAATTATTA
TAAgaagataccttaagggaacttattttggcaggaACTAAGCCCAAAAT
AAAGAGGAATTAAGGTAATGTTAATATGCCGAAATCTTGAATTCAAATAA
AAGGTCTTAGTCCCATTaagatcgaattaaagagagaaacAGCTGAATTT
CTAATCACTCTTTTTCTCTAGGATGGGGATTTAGACAGATTCGTCGAATG
AGTGATACCCTCCAATAATACACCATGCCTATCTTCGAACGCGACGTTtg
caaaaatttcatgaaagaaagttaattctCAAGCGCCTTTTCTTGTTGAC
ATGACGACGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068482-exon-scaffold_485-1491911889:140553..143651 | TCONS_00068482-exon-scaffold_485-1491911889:140553..143651 | Clytia hemisphaerica | exon |
| TCONS_00068482-exon-scaffold_485-1510915933:140553..143651 | TCONS_00068482-exon-scaffold_485-1510915933:140553..143651 | Clytia hemisphaerica | exon |
| TCONS_00068482-exon-scaffold_485-1575043694:140553..143651 | TCONS_00068482-exon-scaffold_485-1575043694:140553..143651 | Clytia hemisphaerica | exon |
| TCONS_00068482-exon-scaffold_485-1491911889:146474..146615 | TCONS_00068482-exon-scaffold_485-1491911889:146474..146615 | Clytia hemisphaerica | exon |
| TCONS_00068482-exon-scaffold_485-1510915933:146474..146615 | TCONS_00068482-exon-scaffold_485-1510915933:146474..146615 | Clytia hemisphaerica | exon |
| TCONS_00068482-exon-scaffold_485-1575043694:146474..146615 | TCONS_00068482-exon-scaffold_485-1575043694:146474..146615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:140553..146615 + |
Blast
The following BLAST results are available for this feature:
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