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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068502 ID=TCONS_00068502|Name=TCONS_00068502|organism=Clytia hemisphaerica|type=transcript|length=1170bp
TTTTTCATGCAGAATATGAAAGAGGTTGATATCTGTcacttgttttgaat
tttttaaatttgtttacGCATTTACCGTACtcaaaatttataaataaaat
caTGATTTGAAAACTGCGGTAAAATGAAAGACTGATTTGAACACAACAAA
TCCGTTTTTGCACAACATGAAGTCCCGGTAAGTTTCCAGTTCAATACTTT
CATAAAAAGGCTGATGTTGGAAGGATGGTCCATTTTTGTGACGAACTTTT
TCTTGGATTGGTTTTAGTTGCATTTCTTCTCGAAAGCTCATGCTGCATAA
ATAATGAAGTACCAGCGAACAATCATGGCATTGAACCTCTTGCTATTATA
GACGATGTAGGTGAGGACATACAGAGAAACGAATTGAAAGCTGTTATCCC
AGTATTATCAGCTGAGTGGAGTgttcaattcaaattcaatctccATGGCA
ACCATACTGGACACAACTATTGGTGTAATATCTTACAGCTAAAGCAGAAT
GGTCCACTTTATCACAAATATGGAGCACGAACGCCTTACGTGACATTTGA
CAGCNCCACTTTATCACAAATATGGAGCACGAACGCCTTACGTGACATTT
GACAGTATCGAAAAGAAGATTTTGATCGATTCTGCTGTAAACAACAATTG
GATGTATCGGAGATATATTCATCGACAAATTCATTTCAACACAGAATACA
ATGTGGAGATTCACCAACGTTACAAAAGTGGAGGTGTTTACAAATATTCC
ATCTTTCTCGATGGAGAAGAAGTCCACTCAACCGATAATACACAAGCTCA
ACAATTTTATGACGTCAAAGTTTTTGTCTCGAATCAAGATGGTTATCCTT
GCCTCGGATCCGTTTCAGATTTGAAAATAACCAATTATTTGTAATTTATG
AATCCCCTTTTTTGGAAGCTTTACATTTTGTACAAACGGGCAATAAATGA
CTTAAAACGAGGAAATGGCAAAAGCAAGGGACAGTGTGAGTATACATTTA
ATATTTAAAGTCAACGAAATTAAAAgcttctaaaaaataaaattaatgga
aattattggaacattttctaatttgaaatatttttgattaatttatatTT
ATTATAGTATTTACAAAGTATTACTTTATAAATTCGATGCTAAAAATGTT
TATGATGTTTATTCAAAAGT Run BLAST on NCBI transcript from alignment at scaffold_485:427280..429854+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068502 ID=TCONS_00068502|Name=TCONS_00068502|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at scaffold_485:427280..429854+ (Clytia hemisphaerica)
TTTTTCATGCAGAATATGAAAGAGGTTGATATCTGTcacttgttttgaat
tttttaaatttgtttacGCATTTACCGTACtcaaaatttataaataaaat
caTGATTTGAAAACTGCGGTAAAATGAAAGACTGATTTGAACACAACAAA
TCCGTTTTTGCACAACATGAAGTCCCGGTAAGTTTCCAGTTCAATACTTT
CATAAAAAGGCTGATGTTGGAAGGATGGTCCATTTTTGTGACGAACTTTT
TCTTGGATTGGTTTTAGTTGCATTTCTTCTCGAAAGCTCATGCTGCATAA
ATAATGTAGGTACAGTACTAAATTGAGTGGAATCACCTTACTTGTCTATT
TCAAAGGATTCGGTTCAATTTAAAAGGGGGATGCACAAAtttgtacaccc
ctgtctctgtagGTGTTGAGCATCCAGGATGGGACTTCTAAATTTCACTG
GGGCGGaagatattcttaaaaatattgAGAAGACGTTGAAAGAAATTGGC
ATTTTGTTATTGTTAACATTGACTTAGGAATTGAAGAACTCCTTTTCatc
agtggcgtggtggcaggggggccaggggggccaggcccccccccccacgg
gagcccttttgagaaggggGGCCCAAAAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCtcgcacactcccttttttgtgttcataa
tgagcgtatagagaggagcgccaaaaacaaaaaatctttaaaaagggcgc
catatttgccttggccaccccggagaaattttcccaccacgccactgcTT
TCATTATTGTTGGCTTCGTTAAACTTAAAATCTCCTTCCTGTATGCTATA
GTATGGGAAATATCGTGTACGGAAAACGAATCCGGTGTAATACACTAATT
AACTCAACACGAGCAGGGAATCGAAATTCGACCCCTGTTGCTGCGAGGTC
TTTTTCGGATTTCGTACTCTATTTTGTATACTAATTTCTTTCTACAGGAA
GTACCAGCGAACAATCATGGCATTGAACCTCTTGCTATTATAGACGATGG
TGAGATAACAacttttgagtttgaagcccggAAAGCGCTAGAAATTCTtg
aatgggaaatgaagccacatAATTCCTATCTGACACGTGTGACCTGGACC
TGCATAGTTTCCAGAAAAATGGATTTGAAAGATATGCCGAGTGAAAAAAA
AGTTGTCCCTCATCATTATAAATGCAGCGTAAATTTTAAGGATTCACTTT
TTCTTccttgagaaaggttaaagattctaaTCTAGCCTTTTGGGCTTCAA
ACTTAATAAGTGCAACTCAACTAATCCCCAAGGATTTGCCACTTTACTGT
TCTTTCtcacattttagattttttgaagatatttacTACTCTAAGCtcga
aggaaaaaaaatctcttcTGATTCGATATTGTTATTGTACCTTGTAGTGC
TTTCGTTCTAAAACTAACAAAATTACCAAGGACTgaattttcctaatttt
tccTTCCTGTGAGCCAGCCTGGGAATCACAAGGtcctcaaaaatatcttt
atcCTTCAACAGTAGGTGAGGACATACAGAGAAACGAATTGAAAGCTGTT
ATCCCAGTATTATCAGCTGAGTGGAGTgttcaattcaaattcaatctccA
TGGCAACCATACTGGACACAACTATTGGTGTAATATCTTACAGCTAAAGC
AGAATGGTCCACTTTATCACAAATATGGAGCACGAACGCCTTACGTGACA
TTTGACAGCNCCACTTTATCACAAATATGGAGCACGAACGCCTTACGTGA
CATTTGACAGTATCGAAAAGAAGATTTTGATCGATTCTGCTGTAAACAAC
AATTGGATGTATCGGAGATATATTCATCGACAAATTCATTTCAACACAGA
ATACAATGTGGAGATTCACCAACGTTACAAAAGTGGAGGTGTTTACAAAT
ATTCCATCTTTCTCGATGGAGAAGAAGTCCACTCAACCGATAATACACAA
GCTCAACAATTTTATGACGTCAAAGTTTTTGTCTCGAATCAAGATGGTTA
TCCTTGCCTCGGATCCGTTTCAGATTTGAAAATAACCAATTATTTGTAAT
TTATGAATCCCCTTTTTTGGAAGCTTTACATTTTGTACAAACGGGCAATA
AATGACTTAAAACGAGGAAATGGCAAAAGCAAGGGACAGTGTGAGTATAC
ATTTAATATTTAAAGTCAACGAAATTAAAAgcttctaaaaaataaaatta
atggaaattattggaacattttctaatttgaaatatttttgattaattta
tatTTATTATAGTATTTACAAAGTATTACTTTATAAATTCGATGCTAAAA
ATGTTTATGATGTTTATTCAAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068502-exon-scaffold_485-1491911889:427280..427584 | TCONS_00068502-exon-scaffold_485-1491911889:427280..427584 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1510915933:427280..427584 | TCONS_00068502-exon-scaffold_485-1510915933:427280..427584 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1575043694:427280..427584 | TCONS_00068502-exon-scaffold_485-1575043694:427280..427584 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1491911889:428477..428528 | TCONS_00068502-exon-scaffold_485-1491911889:428477..428528 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1510915933:428477..428528 | TCONS_00068502-exon-scaffold_485-1510915933:428477..428528 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1575043694:428477..428528 | TCONS_00068502-exon-scaffold_485-1575043694:428477..428528 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1491911889:429042..429854 | TCONS_00068502-exon-scaffold_485-1491911889:429042..429854 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1510915933:429042..429854 | TCONS_00068502-exon-scaffold_485-1510915933:429042..429854 | Clytia hemisphaerica | exon |
| TCONS_00068502-exon-scaffold_485-1575043694:429042..429854 | TCONS_00068502-exon-scaffold_485-1575043694:429042..429854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:427280..429854 + |
Blast
The following BLAST results are available for this feature:
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