TCONS_00068527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068527
Unique NameTCONS_00068527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068527 ID=TCONS_00068527|Name=TCONS_00068527|organism=Clytia hemisphaerica|type=transcript|length=2415bp
TTTATGAAATACTTAAAAAGGAAAGTTCAAAATATGGGGTATTAATCCTG
TATATTACCGTAAAGGTAGATGACCCTCCCATCTCGGTAAGGCACTTTCT
GCTTCTTAACAAAAACGCCTCCATAAGAAGAATTTTTTGTGAAACGAGTG
GTATTACAGACAGATGACGATGTATATTTATCAATGTCAGCAACTTTGAT
TAGATTCGCGCTTAGATTACAAGAAGCAAGAATCGACATACGGTTTGTGC
TTGATTTACAATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTT
ACTGTTTGGtgttatttttgaaatgttttgaaagtttgccAGTGACAAAT
CAAGTTGTGTTGGATCATCATTCGTTGGTGCGATTGAAACAATGGGGTTA
CATCAGTTCTGATGATTCagaagtgaaaagtaataccAACCCTATCCAGC
AACTGAGACTCACTCATAAATTGGTTGACGCGTTAAAAACTTTCCAaagG
TTCGCTTATTTGGAGCCAACCGGTCGTTTGGATAATGCAACCCGAGAAAA
GATGGCTGCACCGAGATGCGGAATGCCTGATGTCATCCCCGCAGAAATTA
AAAACCGTATTAAAAAACGATTCGCTGCGCAAGGCTCCAAATGGCAAAAC
AGGGTGGTCACGTGGCAACTGGAGAACACAAATAACGACGGATTAACGGT
GGCACAAGTTCGTGAATACATGACAAGATCACTCAAAAAGTGGTCTGACG
CTGCAAACATCGACTTCAGAGAAATCCCTCCGACTCCAGCAGGCCCGCAA
GCACCGGCCTCTCAGATCCGAGTACAGTTTGGTCAAGGGAACCATGGTGA
TCAGTTTCCTTTCGATGGGCCTTCAGGGACACTGGCTCATGCTTTCTTCC
CTCTCAGCAATGTTGGTTTATCAGGGGACATCCACTTCGATGATGCTGAG
CGTTACACCATCCTTGATCCACCACGTAGTAGTGGCCTCATCAAATTCTA
CTGGGTAGCGGTGCACGAGTTGGGACATTCCCTCGGGTTATCACACTCTG
AGTTGTTTGGTGCGATCATGTATCCTTTTTACACGCACTTCCCTGGATTG
GAATTCAACCTGACGCAAGATGATATTCTCGGCATACAATCCATTTATGG
TGCAAGAACAGCCACCAGTAGCTCCTCGACCACCACAACAACCACAACGA
CAACGACAGAAAAAGAAGCCACTGCACGCCCAACACAACAAACGCCCTCC
CCTCAAACACAAGCTACTACAAcgaccaccaccaccaccacaacaacaac
gaccactcaaGCCCCAACGACATGCATCAAAAGAGCAACTGCAATCACTC
TCTATAACGGCGTGGACCCTTTCATTTTCAACGACCGTTTGTTGTACATC
AGTAATTCAACAGGGTACGTGCGCCCACAGTTTGACGGATCATTCACAAA
GAAAGTGGACGCCGTTCACGGGAAAGTCGGGAACGCAAATCACGTGGTCT
TCATGCACGACACGACATTCACTGTATACGACCGGCGTACAAACGGGATC
GTTTATCCGGAACGAAAGATTTCCGATGGTTATCAGGGTTTACCAGACGG
TTTTGAGATTCCAGACACAGCTTTCATTTACCCTAGCAACAATAAATTGT
ATATGTTTAAagGAGACAAATATTGGAGGTTCACCGAGAACAAAGCTTTA
GACTACGAGCTTGATTTCGACTATCCGAAGAAAATACACATCCACTGGCC
AGGTGTTCCTGATGACCTGGATGCTGCTTTCGTTTACACCAATAAAGACA
TCTACTTCCTGAAAGGagaagagtactatcgattcGATACGAAACGGATT
GAAACTCGATCTGGTTATCCTCGCCAAAACGAACTTGGCTTCTTAAGATG
TGAAACGTCGATTCAAAACGCGAACGCTGTGCTACAAAACCTAAATTTCT
ATTCGTCGGCATTTCTCACAAAaagtaacattttatttttaatctttgCA
CTTTTTGTTCCTTATCTCTTGTAATAaatattaaattttaaattatcaaa
ttattattttattaactAAAGTAAAGTAATAACTACTTAAATAATCACAA
AGAATATGAATATCAGTTGTTGAAACTACAATAGAATGGTAGATCCTTTG
CTTTTAAGGGTAGAGTGTTTTACCTAAATTTAGTTCACAGCTGAACATTC
ATTGGGGATTCCCAAAATTTCAGTAAGCAGTGGAgcaagaaattcatact
tttcctcACCTTGTtctattcttgaaattttagggtatttttctcAAAGC
GTGCTGtgatcatggaggtataaagaaagacaggagaagtatgctattgt
aaccaagctcgccctacgattaaaaaagttacgatgtatgcatgctcata
atctcatatatcgtg
Run BLAST on NCBI

protein sequence of TCONS_00068527-protein

>TCONS_00068527-protein ID=TCONS_00068527-protein|Name=TCONS_00068527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp
MRRFLNVLLVTIFYCLVLFLKCFESLPVTNQVVLDHHSLVRLKQWGYISS
DDSEVKSNTNPIQQLRLTHKLVDALKTFQRFAYLEPTGRLDNATREKMAA
PRCGMPDVIPAEIKNRIKKRFAAQGSKWQNRVVTWQLENTNNDGLTVAQV
REYMTRSLKKWSDAANIDFREIPPTPAGPQAPASQIRVQFGQGNHGDQFP
FDGPSGTLAHAFFPLSNVGLSGDIHFDDAERYTILDPPRSSGLIKFYWVA
VHELGHSLGLSHSELFGAIMYPFYTHFPGLEFNLTQDDILGIQSIYGART
ATSSSSTTTTTTTTTTEKEATARPTQQTPSPQTQATTTTTTTTTTTTTTQ
APTTCIKRATAITLYNGVDPFIFNDRLLYISNSTGYVRPQFDGSFTKKVD
AVHGKVGNANHVVFMHDTTFTVYDRRTNGIVYPERKISDGYQGLPDGFEI
PDTAFIYPSNNKLYMFKGDKYWRFTENKALDYELDFDYPKKIHIHWPGVP
DDLDAAFVYTNKDIYFLKGEEYYRFDTKRIETRSGYPRQNELGFLRCETS
IQNANAVLQNLNFYSSAFLTKSNILFLIFALFVPYLL
Run BLAST on NCBI

transcript from alignment at scaffold_485:151211..157461-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068527 ID=TCONS_00068527|Name=TCONS_00068527|organism=Clytia hemisphaerica|type=transcript|length=6251bp|location=Sequence derived from alignment at scaffold_485:151211..157461- (Clytia hemisphaerica)
TTTATGAAATACTTAAAAAGGAAAGTTCAAAATATGGGGTATTAATCCTG
TATATTACCGTAAAGGTAGATGACCCTCCCATCTCGGTAAGGCACTTTCT
GCTTCTTAACAAAAACGCCTCCATAAGAAGAATTTTTTGTGAAACGAGTG
GTATTACAGACAGATGACGATGTATATTTATCAATGTCAGCAACTTTGAT
TAGATTCGCGCTTAGATTACAAGAAGCAAGAATCGACATACGGTTTGTGC
TTGATTTACAATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTT
ACTGTTTGGTGTTATTTTTGAAATGTTTTGAAAGTTTGCCAGTGACAAAT
CAAGTTGTGTTGGATCATCATTCGTTGGTAAGGTTGGACTACGTTTTTTA
AGTGTGCCAAACTAAGTGTTTTAGTTATTTTGCAAGGTTTGAGATGTTTA
AAGGGCCGTCCATATTGTGCATATGTAGTTAGGGGGGAGAAGTCAAGAGG
GTTTACCAAAAGCGTACAACTATTGTTTAATTGACGGCATTTCTATAGTT
CTCCGTGTGTACAAGGGGGAGAGGGTGTCAAATATTTGGATGACCCTCAG
GGTGATGTCACTTTTCGAGGGACATTTTATAATTGCTAAAAATGAAATTC
CATTTTTGTTTTTCGTTCATTTACTACCTCTCTTTTTCAGGTGCGATTGA
AACAATGGGGTTACATCAGTTCTGATGATTCAGAAGTGAAAAGTAATACC
AACCCTATCCAGCAACTGAGACTCACTCATAAATTGGTTGACGCGTTAAA
AACTTTCCAAAGGTATTTTCAAAATTCATTTTGTATTTTATTTTCGGATA
TTCCACAGCTGTTACAAAAAAAATATTACATCATTGAAACACCTGTCTCT
CTAAACGATGGTCGGTAGCAGGTAGAGAATAAAGAAGCTTCTTCCAAACT
AATGTGGTCGAATAAAAATCCACTTCTGAAAATCAACTATCCCTGGACTA
GGGAATCAATTATTTTTTCCTGTGAAGCACAAATGAAAAAGGAAAATACG
TAATACTTAAGGCAAAAAATTTAAAGTTTTATTGATATATGATATATATA
TCTATTTTTTCAATGAGTCAATATGATGGGATATTATTTTTTTAACTTCC
TACTTCTCACGAACGAACTTATCAAAATCAGGTGATTTACTAATCAATGA
GATAATTGGGCAGTATCAGCGATTTCGATAGATTCCCTGTTGTGGTGTAA
AGGATTATAGAGTAATTAGTTTCGGTTGAAATGAATAGGAGACTAAATTG
ATCAAGCTATTTTAAGATTAAGATTAAAAATTTTTGATGCTTCAGCAAGT
CGGACATTAATCGTTCTGATGAAAAATATACAACAGTTTTAAGCTCTACA
ACAAATTCTACGACAGTTTTATGCGTTGTGTCAAACTCACTCAAACATCC
GACACAAGTGACCCTTTTAACACCTAATCGCAATATTTTTGAAATTCCAG
TCATAAAAAGAATGACTTCCATCCTGGTTTATATCTAGTTCCTCCACCTT
GTTCAAAAAGCCAATCGGCTTATCCAAGAAGTTTTAGTGATGCTTCATTT
AATTTTTTTACCTAACAGCTTCCTTCTCGACATCTCTCTTTTTTAGAAAG
TCTGATACCTCTGGCGATAAAACGCAAAATTCTACATGCCGGGCGACAAT
ATCTGCGTTTGTGTTTGCTGTGTCCATAAGAAAAACAATCCGTCATCCCT
CTCTTTTTGTTTAGGTTCGCTTATTTGGAGCCAACCGGTCGTTTGGATAA
TGCAACCCGAGAAAAGATGGCTGCACCGAGATGCGGAATGCCTGATGTCA
TCCCCGCAGAAATTAAAAACCGTATTAAAAAACGATTCGCTGCGCAAGGC
TCCAAATGGCAAAACAGGGTAAGTGCGATAATAATAATACCAAGTTTACT
TTCATTTTAGTAAGCGTTGCATATTCTGATTTGTAAGTCTTCTGCACAAT
CATCTACTAAAGTCTGACTCATAATCCGCAGCGGAAACAAAAAGGCTGTA
ACTTTTGATAGAATTCGAATTAGATGGCGGTTTTGTGTTCGTTAAAAAGA
TATTCCGGAGTGGAATATCATGTAAAAGAAAAACAATCCAAAAAGAATTG
AAAATGAGGATGGGAAAATGAAGAAAATCAACTACTTGTAAAATTGCGCT
ATGATCTTATAATTATTTTTAGACAGACTTTTAAGAGGATTCTGAATTTG
CATGTAATGAATTGAATCGAGAGGAGTGAACAATAAATTTCTTTACTGTG
GTCTGTCACTAGGTGGTCACGTGGCAACTGGAGAACACAAATAACGACGG
ATTAACGGTGGCACAAGTTCGTGAATACATGACAAGATCACTCAAAAAGT
GGTCTGACGCTGCAAACATCGACTTCAGAGAAATCCCTCCGACTCCAGCA
GGCCCGCAAGCACCGGCCTCTCAGATCCGAGTACAGTTTGGTCAAGGGAA
CCATGGTGATCAGTTTCCTTTCGATGGGCCTTCAGGGACACTGGCTCATG
CTTTCTTCCCTCTCAGCAATGTTGGTAAGAACTTCTGCTTTTCAATATCT
TTCAATTTCAATTTTCGCACAAAATCAGAATGATTCATAAATATACTCTT
TATCCCATGGCCAGAGAAAGAAACATAAAAGCGATTTATTTGAGCACAAC
TTGACTTTACAAACAATCTAAAGCTAAATTTCAGAAATCTTCTTCTGAAT
CTGAAGGCAATGACCTGATTCCTATTTCTTCGATCTGTGAATTCTCACGT
GATATGCCTATAGTCTCTACTGGTCTGGTAATTCTTATCTACCTGATGTA
TAAATGGCAACGTCAATATATCACATGAGATATAGAAAACACGATGGTAG
ATTATATACCTGATAGGTCTTTTCATAAATTACTTTTGAGTGCAACGACT
GCCTCGTTTTTAAACCATCACCAAGTTGATTAAATTCCTTGAGTCTCCAG
TTTTGATTACTTTCTTGACTTTCAATTACCCTTGCAATATTATGAAAGCG
AGGTAAGCGATACTCGTGACGTAATTTATGAAAACGTCTATTGCGATATT
ACCGCAATTGATGGTTACCTTTTACTATTTCTTAAAATCGTTTTCTTCAT
ATATACTAAAAATACGTTTTGCAGGTTTATCAGGGGACATCCACTTCGAT
GATGCTGAGCGTTACACCATCCTTGATCCACCACGTAGTAGTGGCCTCAT
CAAATTCTACTGGGTAGCGGTGCACGAGTTGGGACATTCCCTCGGGTTAT
CACACTCTGAGTTGTTTGGTGCGATCATGTATCCTTTTTACACGCACTTC
CCTGGATTGGAATTCAACCTGACGCAAGATGATATTCTCGGCATACAATC
CATTTATGGTAAGAGAACCGATCTAGGTGTTCAGTTCATTTAAATTTCCT
CTGTTAACAAGTCATAGTTCAGGACCGTCGCATGTTTAGCCCATAAAGGT
CAGTAGTAGTGAATCTTGCTAGTAGAAAGAATAAAATTCAGTGTAAACAC
ATTCTTTTCGTGAGATTTCTATCCAGGAATTTTATTTCCAGAAACTTTTT
TACGATTAATAATCAAGTTTGACGATTGAAATTTAAGTAGATGACGACAC
AGCGTAGGAAAGAAAAACTCTCTATCAATTTACCTCTTTATGTTAGAAGC
GGTAGGGATGATGCATAGGAGAGCTGTTTTGCATAAGCCAAAACACCAGT
CACTTTACTTTTCCCGCTTTTTTTCTTTACATAGGCGAGAAATCAGGGGC
GTTCGGTCCTTCTGCTCCACCCTCTCCTTTCACCACCCTGGGGTTTGTTT
TGGTTGGCAGTCTGATACATTGGTTGTTGATGTTGTAAAGCATTCATCTC
CTTCGTAGGTGCAAGAACAGCCACCAGTAGCTCCTCAACCACCACAACNT
GTTGTAAAGCATTCATCTCCTTCGTAGGTGCAAGAACAGCCACCAGTAGC
TCCTCGACCACCACAACAACCACAACGACAACGACAGAAAAAGAAGCCAC
TGCACGCCCAACACAACAAACGCCCTCCCCTCAAACACAAGGTAAATGTC
TCTAAATTCTTGCAAACCTTGCCAAGAGCCAATAAATACAAATATAACTT
GTGATTGAAATACATCGGAACAAAATTGGTAAAATTGGGACAACCCTTTA
TCGCGTTTATTTTTTCCTCGTCTTCTCCAGCTACTACAACGACCACCACC
ACCACCACAACAACAACGACCACTCAAGCCCCAACGACATGCATCAAAAG
AGCAACTGCAATCACTCTCTATAACGGCGTGGACCCTTTCATTTTCAACG
ACCGTTTGTTGTACATCAGTAATTCAACAGGGTACGTGCGCCCACAGTTT
GACGGATCATTCACAAAGAAAGTGGACGCCGTTCACGGGAAAGTCGGGAA
CGCAAATCACGTGGTCTTCATGCACGACACGACGTACGTATTTATTACAC
ACGCCCTTCTCTTTATTCTCCTGTTTATTTGAACCCCACGTATTCGAAAT
TTTTGGCTAAAATTCAGTTGGTTTCCCCTCAAACTTTTAAATACTCAATT
ACTTTTAATTCAGCTGTAAACCCTCGGTTATTTAAACTTCAGTTATTCGA
AACTTCAAAACTCTTGGTTTAGAGCTAATTTTCCCTCAAATACTCGAAGT
TTATTTATAAACTTTATAGTAAAGATTAAACCCTTTTAGGACACACACAA
CTTCTTCGTATTTATTATTGAATATGGAGCTTACCAATCAAAAACATCTA
CGGAGACAGATCGGTTCAAAGTCTTTGTGTTTAAAAAAATGTGATTTTTC
CCTCTTTAGATTCACTGTATACGACCGGCGTACAAACGGGATCGTTTATC
CGGAACGAAAGATTTCCGATGGTTATCAGGGTTTACCAGACGGTTTTGAG
ATTCCAGACACAGCTTTCATTTACCCTAGCAACAATAAATTGTATATGTT
TAAAGGTAAAAATTTTTATTAAATCCATGCCTATATTTTACTTTTATTCT
ATGACACATAGAAAGCAGATACGCTTTGCAAAATAGCGCGGTTCCTTTGT
ATCGATGAGGCGTCTTCAAAAACTGACCTGCTGATAGAGAGTCCATGAAA
TGACTTTTTTGAAACCTAAAATCAAGCAGGTTGTTTTTTCACTAAATTAC
AACATACCCTCCTTCCACTTACAACAAACATCTCCTCATTTTCCAGGAGA
CAAATATTGGAGGTTCACCGAGAACAAAGCTTTAGACTACGAGCTTGATT
TCGACTATCCGAAGAAAATACACATCCACTGGCCAGGTGTTCCTGATGAC
CTGGATGCTGCTTTCGTTTACACCAATAAAGACATCTACTTCCTGAAAGG
TGAGTCAAATATGGTGGTAAAGCTTGGGACGGAACTGAAGGCTGGTTAGG
ATGTCCAGACATCACGGTGATCAGTATTCGCTCCGGTATAGTTTTCGTTA
CGGAAAGGAAATGTTCATATTCGTTTCGGAACAATAAAACGGAGTAGTAT
AGTTCCGATGCAAATATTTTCTTCAAGAAATTAGCAGTGTTGAAATGAAT
GATTTCTACACAAAAGCGTATTATGTTCTTTCGATCTTTGTTTTTCCTTA
GGAGAAGAGTACTATCGATTCGATACGAAACGGATTGAAACTCGATCTGG
TTATCCTCGCCAAAACGAACTTGGCTTCTTAAGATGTGAAACGTCGATTC
AAAACGCGAACGCTGTGCTACAAAACCTAAATTTCTATTCGTCGGCATTT
CTCACAAAAAGTAACATTTTATTTTTAATCTTTGCACTTTTTGTTCCTTA
TCTCTTGTAATAAATATTAAATTTTAAATTATCAAATTATTATTTTATTA
ACTAAAGTAAAGTAATAACTACTTAAATAATCACAAAGAATATGAATATC
AGTTGTTGAAACTACAATAGAATGGTAGATCCTTTGCTTTTAAGGGTAGA
GTGTTTTACCTAAATTTAGTTCACAGCTGAACATTCATTGGGGATTCCCA
AAATTTCAGTAAGCAGTGGAGCAAGAAATTCATACTTTTCCTCACCTTGT
TCTATTCTTGAAATTTTAGGGTATTTTTCTCAAAGCGTGCTGTGATCATG
GAGGTATAAAGAAAGACAGGAGAAGTATGCTATTGTAACCAAGCTCGCCC
TACGATTAAAAAAGTTACGATGTATGCATGCTCATAATCTCATATATCGT
G

Coding sequence (CDS) from alignment at scaffold_485:151211..157461-

>TCONS_00068527 ID=TCONS_00068527|Name=TCONS_00068527|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_485:151211..157461- (Clytia hemisphaerica)
ATGAGGAGATTTTTGAATGTTCTGTTGGTAACAATTTTTTACTGTTTGGT
GTTATTTTTGAAATGTTTTGAAAGTTTGCCAGTGACAAATCAAGTTGTGT
TGGATCATCATTCGTTGGTGCGATTGAAACAATGGGGTTACATCAGTTCT
GATGATTCAGAAGTGAAAAGTAATACCAACCCTATCCAGCAACTGAGACT
CACTCATAAATTGGTTGACGCGTTAAAAACTTTCCAAAGGTTCGCTTATT
TGGAGCCAACCGGTCGTTTGGATAATGCAACCCGAGAAAAGATGGCTGCA
CCGAGATGCGGAATGCCTGATGTCATCCCCGCAGAAATTAAAAACCGTAT
TAAAAAACGATTCGCTGCGCAAGGCTCCAAATGGCAAAACAGGGTGGTCA
CGTGGCAACTGGAGAACACAAATAACGACGGATTAACGGTGGCACAAGTT
CGTGAATACATGACAAGATCACTCAAAAAGTGGTCTGACGCTGCAAACAT
CGACTTCAGAGAAATCCCTCCGACTCCAGCAGGCCCGCAAGCACCGGCCT
CTCAGATCCGAGTACAGTTTGGTCAAGGGAACCATGGTGATCAGTTTCCT
TTCGATGGGCCTTCAGGGACACTGGCTCATGCTTTCTTCCCTCTCAGCAA
TGTTGGTTTATCAGGGGACATCCACTTCGATGATGCTGAGCGTTACACCA
TCCTTGATCCACCACGTAGTAGTGGCCTCATCAAATTCTACTGGGTAGCG
GTGCACGAGTTGGGACATTCCCTCGGGTTATCACACTCTGAGTTGTTTGG
TGCGATCATGTATCCTTTTTACACGCACTTCCCTGGATTGGAATTCAACC
TGACGCAAGATGATATTCTCGGCATACAATCCATTTATGGTGCAAGAACA
GCCACCAGTAGCTCCTCGACCACCACAACAACCACAACGACAACGACAGA
AAAAGAAGCCACTGCACGCCCAACACAACAAACGCCCTCCCCTCAAACAC
AAGCTACTACAACGACCACCACCACCACCACAACAACAACGACCACTCAA
GCCCCAACGACATGCATCAAAAGAGCAACTGCAATCACTCTCTATAACGG
CGTGGACCCTTTCATTTTCAACGACCGTTTGTTGTACATCAGTAATTCAA
CAGGGTACGTGCGCCCACAGTTTGACGGATCATTCACAAAGAAAGTGGAC
GCCGTTCACGGGAAAGTCGGGAACGCAAATCACGTGGTCTTCATGCACGA
CACGACATTCACTGTATACGACCGGCGTACAAACGGGATCGTTTATCCGG
AACGAAAGATTTCCGATGGTTATCAGGGTTTACCAGACGGTTTTGAGATT
CCAGACACAGCTTTCATTTACCCTAGCAACAATAAATTGTATATGTTTAA
AGGAGACAAATATTGGAGGTTCACCGAGAACAAAGCTTTAGACTACGAGC
TTGATTTCGACTATCCGAAGAAAATACACATCCACTGGCCAGGTGTTCCT
GATGACCTGGATGCTGCTTTCGTTTACACCAATAAAGACATCTACTTCCT
GAAAGGAGAAGAGTACTATCGATTCGATACGAAACGGATTGAAACTCGAT
CTGGTTATCCTCGCCAAAACGAACTTGGCTTCTTAAGATGTGAAACGTCG
ATTCAAAACGCGAACGCTGTGCTACAAAACCTAAATTTCTATTCGTCGGC
ATTTCTCACAAAAAGTAACATTTTATTTTTAATCTTTGCACTTTTTGTTC
CTTATCTCTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042738XLOC_042738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068527-proteinTCONS_00068527-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068527-exon-scaffold_485-1575043694:157085..157461TCONS_00068527-exon-scaffold_485-1575043694:157085..157461Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:156650..156771TCONS_00068527-exon-scaffold_485-1575043694:156650..156771Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:155544..155697TCONS_00068527-exon-scaffold_485-1575043694:155544..155697Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:154888..155149TCONS_00068527-exon-scaffold_485-1575043694:154888..155149Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:154054..154287TCONS_00068527-exon-scaffold_485-1575043694:154054..154287Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:153371..153484TCONS_00068527-exon-scaffold_485-1575043694:153371..153484Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:152979..153231TCONS_00068527-exon-scaffold_485-1575043694:152979..153231Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:152457..152602TCONS_00068527-exon-scaffold_485-1575043694:152457..152602Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:152063..152215TCONS_00068527-exon-scaffold_485-1575043694:152063..152215Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1575043694:151211..151810TCONS_00068527-exon-scaffold_485-1575043694:151211..151810Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:157085..157461TCONS_00068527-exon-scaffold_485-1510915933:157085..157461Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:156650..156771TCONS_00068527-exon-scaffold_485-1510915933:156650..156771Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:155544..155697TCONS_00068527-exon-scaffold_485-1510915933:155544..155697Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:154888..155149TCONS_00068527-exon-scaffold_485-1510915933:154888..155149Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:154054..154287TCONS_00068527-exon-scaffold_485-1510915933:154054..154287Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:153371..153484TCONS_00068527-exon-scaffold_485-1510915933:153371..153484Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:152979..153231TCONS_00068527-exon-scaffold_485-1510915933:152979..153231Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:152457..152602TCONS_00068527-exon-scaffold_485-1510915933:152457..152602Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:152063..152215TCONS_00068527-exon-scaffold_485-1510915933:152063..152215Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1510915933:151211..151810TCONS_00068527-exon-scaffold_485-1510915933:151211..151810Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:157085..157461TCONS_00068527-exon-scaffold_485-1491911889:157085..157461Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:156650..156771TCONS_00068527-exon-scaffold_485-1491911889:156650..156771Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:155544..155697TCONS_00068527-exon-scaffold_485-1491911889:155544..155697Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:154888..155149TCONS_00068527-exon-scaffold_485-1491911889:154888..155149Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:154054..154287TCONS_00068527-exon-scaffold_485-1491911889:154054..154287Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:153371..153484TCONS_00068527-exon-scaffold_485-1491911889:153371..153484Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:152979..153231TCONS_00068527-exon-scaffold_485-1491911889:152979..153231Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:152457..152602TCONS_00068527-exon-scaffold_485-1491911889:152457..152602Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:152063..152215TCONS_00068527-exon-scaffold_485-1491911889:152063..152215Clytia hemisphaericaexon
TCONS_00068527-exon-scaffold_485-1491911889:151211..151810TCONS_00068527-exon-scaffold_485-1491911889:151211..151810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:151211..157461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07122	1.2799	0.432655	0.210315	2.25938	1.66298	1.11527	1.34721	0.754972	0.915868	0.977678	0.593088	20.8466	12.515	0.354825	0.353046	0.340979	0.723329	27.4754	28.4891	0.45768	0.537629	0.427013	0.533801	1.35352	1.37734	0.286244	0.278434	0.532988	0.595835
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021190Pept_M10A
IPR018487Hemopexin-like_repeat
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR002477Peptidoglycan-bd-like
IPR001818Pept_M10_metallopeptidase
IPR000585Hemopexin-like_dom
IPR021158Pept_M10A_Zn_BS
IPR018486Hemopexin_CS
IPR033739M10A_MMP
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00068527 vs. Swiss-Prot (Human)
Match: MMP25 (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.822e-34
Identity = 95/237 (40.08%), Postives = 130/237 (54.85%), Query Frame = 3 
Query:  450 QLRLTHKLVDALKTFQRFAYLEPTGRLDNATREKMAAPRCGMPDVIPAEIKNRIKKRFAAQGSKWQNRVVTWQLEN-TNNDGLTVAQVREYMTRSLKKWSDAANIDFREIPPTPAGPQAPASQIRVQFGQGNHGDQFPFDGPSGTLAHAFFPLSNVGLSGDIHFDDAERYTILDPPRSSGLIKFYWVAVXXXXXXXXXXXXXXFGAIMYPFYTHFPG--LEFNLTQDDILGIQSIYG 1151
            QL+   KL DA+K  QRFA L  TGR+D  T   M  PRC +PDV+      R ++R+A  GS W+ R +TW++ +   +  L+   VR  M+ +L  W   + + F E+      PQ     I + F +  H D +PFDG  GTLAHAFFP  +  +SGD HFDD E +T     +       + VAVHE GH+LGL HS    +IM PFY    G   ++ L+QDD  G+Q +YG
Sbjct:   51 QLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDVLGVAGLVRRRRRYALSGSVWKKRTLTWRVRSFPQSSQLSQETVRVLMSYALMAWGMESGLTFHEV----DSPQGQEPDILIDFARAFHQDSYPFDGLGGTLAHAFFPGEHP-ISGDTHFDDEETWTFGS--KDGEGTDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYG 280
The following BLAST results are available for this feature:
BLAST of TCONS_00068527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP255.822e-3440.08Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP... [more]
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