TCONS_00068532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068532
Unique NameTCONS_00068532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068532 ID=TCONS_00068532|Name=TCONS_00068532|organism=Clytia hemisphaerica|type=transcript|length=865bp
tagCGTTCTGTTTTTGTAAGGCAGATATGGGTTATTAGTAATCATATTTT
CTTTGTTGTAGCCAAACCCTGATGAATGATACAAGTAGCAAAAAATACCC
AGCCGTACCCATGGTAAATATATCCAGGCAATCTGAATCAAATTAATATG
ACAATCCAAATCAAACACAATTGAACCTCAAACTATCTACCATATGGACC
TATCAACATTAAAGACGAGTTAAAACCTGGCCAAATAAAGTTATGGTGTG
CTTGTGGTTTGAGTAAGAAACAACCTTGGTGCGATGGCTCGCACAAAGGA
ACTGGGATATCACCTTTGAAATGGACTGTTCCAGAAAACAAAGTACAAcg
tttatttcaaatttgcaACTGTAAGTACACAAAAGCTCCACCATTTTGTG
ATGCAACTCATGTTTATTTACCTTTGGCCGTGAAAAAGAAGCAAGAAGAA
TGTTCAGCTGATCATTCGAAACAAGTGAAATTATGCACAGGGTGTGGAAA
GGTTCCAGATTGGTAGTTAGTTCTGCCTTAGTTTACTGGCTACACAACAT
TTAGTTACTGGCTACACAACATTTAAGATCTATTCAGCCTGATTACAACA
AATCTTTTGCAGATTTTATTGCTGTATTCATCCAGAATCTTGCATACAAT
ATGTCcataaaaaagcaaaatatGTAATATATATTCAGTGTGTACCAAAA
TAAGAGGAGCGGGCGGGTTTATTATAcaaattcaaatcattcttgCGGCT
TTTGATGACTCAattgtttaatttctttttcaaaaacccacTTTCATTAC
CTTGGGAATCTAAGTCTATTGAACATACAAAGAACttccttttcaaaatt
atatAATGCAGCCCA
Run BLAST on NCBI

transcript from alignment at scaffold_485:161938..165030-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068532 ID=TCONS_00068532|Name=TCONS_00068532|organism=Clytia hemisphaerica|type=transcript|length=3093bp|location=Sequence derived from alignment at scaffold_485:161938..165030- (Clytia hemisphaerica)
TAGCGTTCTGTTTTTGTAAGGCAGATATGGGTTATTAGTAATCATATTTT
CTTTGTTGTAGCCAAACCCTGATGAATGATACAAGTAGCAAAAAATACCC
AGCCGTACCCATGGTAAATATATCCAGGCAATCTGAATCAAATTAATATG
ACAATCCAAATCAAACACAATTGAACCTCAAACTATCTACCAGTAAATAT
TACATCCTTTATAAAATTACTTTATTATTTTACCCTATACATCAGTCAAA
ACTATTTCAAATTGCGTTTTAACAATTTTTGCAGATCCAAGTTTTTTCCA
AATTATGAAGCATCCTCTTTCAGTTCTTATAAAGTTATAAATTAAATTAT
TTATTTGCTTCTAATGATGCATGGTATGCAGAGGGGTTCTAGGTCCCCCC
AGAAAATTTAGCCCCCCCCCCCTAAAAATTAGGTACCCCCTGACATAAAA
CCTCTCAGCCCCCAGTAGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAT
AACGGGACAGATGTTTAAAAACTTTCTTGATATAAAAGTTGGACTAAAAC
AATGAATCTGTGGATTGAAAGCAGAAAAAGATTACTCCCAATTTTAAACA
AAGACAGCTCCCAGATCTTTCACATGCAGTTGTAGGTCCCCCCAGCAATA
TAGGTACCCCCTAAAAAATTAAATTTTGCCAGCCCCCAGCCAGAATATGG
TAAAAAAAAAATTAGGTCCCCCCTAATCTCTGGGGGGGGGTTCATACCAT
GTGATGGCATGTCAAAGGAAAGCTGCTTTGAATAGATATATAAAAGATTT
TCACAACCATTTAGGTCATTACTGAGATGTTTTCTATCTATCTTAATACA
TTAATGTATTAATATGATGGACCCTAAAATGTAGGTTGAATTTTGTGTTT
GAAACTTGATTGTGCCTACTATTTTCATTATCAGAAATTCTTAAAAACCA
ATCTGGTTGATTTGATGATTAGAATTAATCAAGTAAATTTTGGTCACCTC
TTTTCAATGGCCTCTAAAATGTAGGTTAGAATTCTTTGATAATTTTTCAT
GAAGTACTTTTGATATAGTCCACAGAAGGTATCTAGCCGTTTTTGTCAAT
TCAGCAATATATATATAAGAAATATAATTTATTTCTATTTATACCCAGAA
GAGGAAAATATCGATATTGCAGAATGAGAGGGAAAAGTATTTTTCATCAA
TTTTCATTTTGTGTCTTTTCGCCAGTATGGACCTATCAACATTAAAGACG
AGTTAAAACCTGGCCAAATAAAGTTATGGTGTGCTTGTGGTTTGAGTAAG
AAACAACCTTGGTGCGATGGTAAGTTTATACACAACTCAAACGATCATTA
ATGCTGTTGCGGGTGCAGTCTATTGAAACTTCACTAAAGGATGCAGGCCG
CAGGCTATGTCCTTGTTTAAAGTCTAATTCCCTAGTATAATAGACTTAAC
ATGATGTTTCATTGCTACTGCGTCCGCTGGAGCTGGAACTAGGTGATACA
GATCGATCCCTATTCTTTCTTTTCCTTTTTCTTGGTCTCTTTCCCCTATC
ATTTTCATCGATATCAGAGCTTTTTGTAGATTCTTCATTGGTTTTGTTTT
ATTCTCAGACACCAACTTGGGTCGAGGAATGAAACAAACAAGTACATAGC
CTGAGTCCCACAGCCTCTAGTGAAGTTTCGCTAGAGTGCGTCCGCAACGG
CATTATTGAATTCGTCTGTTTTTAAGCGAAGTAAAATTATGTAATGATCT
ATTGGCTTGAACTTGCTTGTAGGTAAAAGTGTCTTGTTGACGTGTGGGTT
TATTATATATTACTTGTCTAAAATCAAAATCCACAAGGAAGCAAACCCAC
AACAACATAGACAATCCACACACTTTAGCACAGCTTGAGAAAAATAATAC
TTATACCCACTGACCTTTATATAACCCTGGGAAAAAGCTTCTCAATCCCA
GCCAAGCAAAATCTTTGATCGGAGTTTTTTGAAAATTGGTACCCTAATGT
CGGCACTACTCGATAGCGGTGTAAATGCACCGAGANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAATTTTTAACATTGCAATGGCTTCTCCTTGGGTACC
AATTCTAAAAAAACTCCAATCAAAGATGGCAGATATTGTTTGGTCCAGGG
TTATATAAAGGTCAGTGGTTATACCATATGAAGGCAGCAAAACTTTCTTT
AATGTTCTACTAAGGCTAATAAACTAATAATTTTTTTAAGTTTTCAACTT
TTGTTTCTTATAAGGCTCGCACAAAGGAACTGGGATATCACCTTTGAAAT
GGACTGTTCCAGAAAACAAAGTACAACGTTTATTTCAAATTTGCAACTGT
AAGTACACAAAAGCTCCACCATTTTGTGATGCAACTCATGTTTATTTACC
TTTGGCCGTGAAAAAGAAGCAAGAAGAATGTTCAGCTGATCATTCGAAAC
AAGTGAAATTATGCACAGGGTGTGGAAAGGTTCCAGATTGGTAGTTAGTT
CTGCCTTAGTTTACTGGCTACACAACATTTAGTTACTGGCTACACAACAT
TTAAGATCTATTCAGCCTGATTACAACAAATCTTTTGCAGATTTTATTGC
TGTATTCATCCAGAATCTTGCATACAATATGTCCATAAAAAAGCAAAATA
TGTAATATATATTCAGTGTGTACCAAAATAAGAGGAGCGGGCGGGTTTAT
TATACAAATTCAAATCATTCTTGCGGCTTTTGATGACTCAATTGTTTAAT
TTCTTTTTCAAAAACCCACTTTCATTACCTTGGGAATCTAAGTCTATTGA
ACATACAAAGAACTTCCTTTTCAAAATTATATAATGCAGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042739XLOC_042739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068532-exon-scaffold_485-1575043694:164839..165030TCONS_00068532-exon-scaffold_485-1575043694:164839..165030Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1575043694:163612..163705TCONS_00068532-exon-scaffold_485-1575043694:163612..163705Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1575043694:161938..162516TCONS_00068532-exon-scaffold_485-1575043694:161938..162516Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1510915933:164839..165030TCONS_00068532-exon-scaffold_485-1510915933:164839..165030Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1510915933:163612..163705TCONS_00068532-exon-scaffold_485-1510915933:163612..163705Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1510915933:161938..162516TCONS_00068532-exon-scaffold_485-1510915933:161938..162516Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1491911889:164839..165030TCONS_00068532-exon-scaffold_485-1491911889:164839..165030Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1491911889:163612..163705TCONS_00068532-exon-scaffold_485-1491911889:163612..163705Clytia hemisphaericaexon
TCONS_00068532-exon-scaffold_485-1491911889:161938..162516TCONS_00068532-exon-scaffold_485-1491911889:161938..162516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:161938..165030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0427	8.378	3.39268	2.3895	5.26953	7.06218	3.98755	2.41739	0.277482	0.164836	0.600262	0.129984	0.329649	0	0.36086	0.557561	0.544565	1.3112	0	0	0.49735	0.310939	15.0083	8.60397	0.526667	0.808953	0.676086	0	4.75911	6.56078
Blast
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BLAST of TCONS_00068532 vs. Swiss-Prot (Human)
Match: CISD3 (CDGSH iron-sulfur domain-containing protein 3, mitochondrial OS=Homo sapiens GN=CISD3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.705e-16
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  208 IKDELKPGQIKLWCACGLSKKQPWCDGSH--KGTGISPLKWTVPENKVQRLFQICNCKYTKAPPFCDATH 411
            IK EL  G+   WC CG SKKQP+CDGSH  + TG+SPLK+   E    R+  +C CK T+ PP+CD TH
Sbjct:   47 IKVELVAGKTYRWCVCGRSKKQPFCDGSHFFQRTGLSPLKFKAQET---RMVALCTCKATQRPPYCDGTH 113
The following BLAST results are available for this feature:
BLAST of TCONS_00068532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CISD31.705e-1652.86CDGSH iron-sulfur domain-containing protein 3, mit... [more]
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