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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068544 ID=TCONS_00068544|Name=TCONS_00068544|organism=Clytia hemisphaerica|type=transcript|length=1692bpRun BLAST on NCBI transcript from alignment at scaffold_485:457466..512304- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068544 ID=TCONS_00068544|Name=TCONS_00068544|organism=Clytia hemisphaerica|type=transcript|length=54839bp|location=Sequence derived from alignment at scaffold_485:457466..512304- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068544 vs. Swiss-Prot (Human)
Match: AQP9 (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=2 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 2.930e-59 Identity = 121/268 (45.15%), Postives = 170/268 (63.43%), Query Frame = 2
Query: 404 LAELMGTFILMMFGIGSVAALVLGKGAVGTFLSVNFGWGIGCALGVYWSAGISGGHINPAVTLAMCVCGRLPWKQLPVYWAAQFLGSFIASALCFAIYKDLIYAYETQLTL-----KTAGIFSTYPFANVSHGTAFGDQVVGTMLLVGTVCALTDKRNSPPSGGTLPXXXXXXXXXXXXXXXXNCGYGINPARDLIPRIFTAIAGWGSEPFTTADHWFWIPIVGQFXXXXXXXXXXXXTIEMHHPNQHKP-SLLKSESVPTDYEKSAV 1189
L+E +GTFIL++ G G VA +L +G G +++N G+ + A+ +Y + G+SGGHINPAV+LAMC+ GR+ W +LP Y AQFLG+F+ +A F IY D + ++ L TA IF+TYP +S AF DQVV TM+L+ V A+ D RN G P+ +GL++ VI S G+N G +NPARDL PR+FTA+AGWG E F ++++WIP+VG +G IG L+Y+L IE+HHP +SE P YE S +
Sbjct: 27 LSEFLGTFILIVLGCGCVAQAILSRGRFGGVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFRAGNNFWWIPVVGPLVGAVIGGLIYVLVIEIHHPEPDSVFKTEQSEDKPEKYELSVI 294 The following BLAST results are available for this feature:
BLAST of TCONS_00068544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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