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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068610 ID=TCONS_00068610|Name=TCONS_00068610|organism=Clytia hemisphaerica|type=transcript|length=2429bp
GCTTAAttcttctaattttgaatatttatttgaTACATTAAGAATTCTAT
TACAGTCAAAAATCATGAAAAGAGGTTTATTGAGTACATAGTAATTTTTC
ATACCCCCGGcaatatttcatatattttcCTTTGTgtaaaacttataaaa
acagcTGAGAGATCGAGAAGGTTCACTGAAGACAAAAACACAACAAACAC
GAAAGAACTACACAAGTTGaactcaaaaattctaaatcaaAATGTTTACT
GAAATCAACTCTGCTATCAAATTTTTGGTCAATGAACTTGCACAAAAGCT
TGGAGAGTTTCCAGAAGAGACATCTGAAACCTTGAAGAAAAGTCTGAGAG
AACACTTGATCGAAAGAATCGATGGTCATTGGTACCCGAACAAGCCAATC
AAAGGCAGTGCATATCGATGTCTGAACATCAGTATTGACGATGGATCTGT
CGACTCTGTCTTGCTAAAAGCTGGAGAAGAAATTGGAATCACAAAAAGTG
GAATGATGGCTGTTTTCCCAAAAGGACTTGCTTTGTGGATTGACCCAAAT
GACGTCAGTTGTCGACTAGGTAAAGGTgctattttcccaattttccgAAA
GATTGCTGAACAAAAATCAGCCAGCCCAACACCAAATGTTGCCCCTCTCA
ATGGTCAAAGAAGACCCCAACAACGTCCACGATCCATCTCACCACCCCTC
TCCAGTACCAATCAATATAACTCCTTCCAGCCCCAACAACTAACACGCCC
ACGATCAACAACTCCCCCAGGATTTACCAAAGCTAATGCTGGACAAATGT
ATCAGCAAACAGTGAAGAAGAACCACTCTTTGGACAACCTTCACAAGCTT
TGGGATACCATTCCCAACACCACCAGCTATGTGCCATCTACGTCCATCTA
CCAAGCACCTGCTGTTTCTACTGCACGTCATTACCATGGGCAGCAACAAC
AAAAACGACCGGATACTGTTTATTCCTTCAATCAATACAGTACCTTTTAC
AACTCTACTTCTATGAAGAAGAAATATAATAACAGCAGCAGCAACTATAA
CACTGCTGCTTATTACAAACAAcagcagcaacaacaacaacaacaacagc
aaaaaCAAATGTGGCAAGATGACGATACTTACAACAAGTACCATTGGTCG
CGATCTGAACGTAATGCATCACCAGTTAATGCATTCAACTCTTACAGCAG
CTACTCCCGACATGCGCAGGAAGTATGTTGAGGAGCCTGTAAGCActcaa
aatagaaatttttatctacATTAGATTTAATTTAAGCCTCGAGATTGGTT
GATCCTCTATCTCATTCAGTACATGAaacgttttgtttttaagtGTTCTA
AACAAGCTTGAAATTAGACCAAgtctaaaaatgaattttgaaagtctttt
caaataattattgtttgacctctttcattttttgaaaggaTAGCAATTAA
GTataatttgtttatattttgtatATATTGTTAAAataggatttaaaaaa
aaatgtcacAGACATAACATAAACATATCTATATAGTGTTTGAATGTAAC
AAAATTTTATTATATAACGTTTTTTCAACAAATTGTACATTTAACatagc
tttttattttttggactttacaGTATATTAATTTTCCCCGTTCTATTATG
TATATGTATAAATATGGCACTTTTTAGtagtaaaataaataaaattgaaa
atttttatcaaaaattgtaaCTTGTAGTAATATtattcctttttatatat
tttctggGTCTGCAATTtattttgtataatatttttgttttatcattACA
TTTTAATGATTACCCATTATGGTGGACAGAAGAAATAGATgccattttta
aatcaaaaaaaaaaaaattattatattgtcacttcatttttgtttcatta
tttCGATTGGATACacactttccaaaaaaaatcatccttcTAATATTCTT
ATACAGTGTGTATTCTTAGAGATGTTATTCTCAGTTATCTCAGCTTCCAT
TTTGTCTTACTGTGATCTCTGAGATTAATTAAATTGCTGTCGATACTCGA
TAGTGATGAAATAGACGGACAAAATCGCTTTACGTGTATAAATACAGGAA
TAAATTATAAGGGGACTTAGTTATGAAACTAGAAGTGTACTTGCCTATCC
TTTTCACTGGTCTAAATACAAATTTGTTGATTTAAGACTATGCTACGTGA
CAGTAAAGTTTGGAGTAATCTTTTTCTGGGGTAGTGCCAAGTTCATTTGC
ATCAGTAGCTGGTGaacggtttttttttaagataagCAAAATTGATAATA
GAATTTCAGAGATAACGGGTCTATTTGTGCAAAGACTaacgaaacaaaaa
cattcaaattccTTTGCTTACTAATTAAAGGAGTGTTCAGTATTATCAAC
TAATACCTGTTTTTCTGTCAACAAAAGCG Run BLAST on NCBI protein sequence of TCONS_00068610-protein >TCONS_00068610-protein ID=TCONS_00068610-protein|Name=TCONS_00068610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MFTEINSAIKFLVNELAQKLGEFPEETSETLKKSLREHLIERIDGHWYPN
KPIKGSAYRCLNISIDDGSVDSVLLKAGEEIGITKSGMMAVFPKGLALWI
DPNDVSCRLGKGAIFPIFRKIAEQKSASPTPNVAPLNGQRRPQQRPRSIS
PPLSSTNQYNSFQPQQLTRPRSTTPPGFTKANAGQMYQQTVKKNHSLDNL
HKLWDTIPNTTSYVPSTSIYQAPAVSTARHYHGQQQQKRPDTVYSFNQYS
TFYNSTSMKKKYNNSSSNYNTAAYYKQQQQQQQQQQQKQMWQDDDTYNKY
HWSRSERNASPVNAFNSYSSYSRHAQEVC Run BLAST on NCBI transcript from alignment at scaffold_486:240170..242660+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068610 ID=TCONS_00068610|Name=TCONS_00068610|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at scaffold_486:240170..242660+ (Clytia hemisphaerica)
GCTTAAttcttctaattttgaatatttatttgaTACATTAAGAATTCTAT
TACAGTCAAAAATCATGAAAAGAGGTTTATTGAGTACATAGTAATTTTTC
ATACCCCCGGcaatatttcatatattttcCTTTGTgtaaaacttataaaa
acagcTGAGAGATCGAGAAGGTTCACTGAAGACAAAAACACAACAAACAC
GAAAGAACTACACAAGTTGaactcaaaaattctaaatcaaAATGTTTACT
GAAATCAACTCTGCTATCAAATTTTTGGTCAATGAACTTGCACAAAAGCT
TGGAGAGTTTCCAGAAGAGACATCTGAAACCTTGAAGAAAAGTCTGAGAG
AACACTTGATCGAAAGAATCGATGGTCATTGGTACCCGAACAAGCCAATC
AAAGGCAGTGCATATCGATGTCTGAACATCAGTATTGACGATGGATCTGT
CGACTCTGTCTTGCTAAAAGCTGGAGAAGAAATTGGAATCACAAAAAGTG
GAATGATGGCTGTTTTCCCAAAAGGACTTGCTTTGTGGATTGACCCAAAT
GACGTCAGTTGTCGACTAGGTAAAGGTgctattttcccaattttccgAAA
GATTGCTGAACAAAAATCAGCCAGCCCAACACCAAATGTTGCCCCTCTCA
ATGGTCAAAGAAGACCCCAACAACGTCCACGATCCATCTCACCACCCCTC
TCCAGTACCAATCAATATAACTCCTTCCAGCCCCAACAACTAACACGCCC
ACGATCAACAACTCCCCCAGGATTTACCAAAGCTAATGCTGGACAAATGT
ATCAGCAAACAGTGAAGAAGAACCACTCTTTGGACAACCTTCACAAGCTT
TGGGATACCATTCCCAACACCACCAGCTATGTGCCATCTACGTCCATCTA
CCAAGCACCTGCTGTTTCTACTGCACGTCATTACCATGGGCAGCAACAAC
AAAAACGACCGGATACTGTTTATTCCTTCAATCAATACAGTACCTTTTAC
AACTCTACTTCTATGAAGAAGAAATATAATAACAGCAGCAGCAACTATAA
CACTGCTGCTTATTACAAACAAcagcagcaacaacaacaacaacaacagc
aaaaaCAAATGTGGCAAGATGACGATACTTACAACAAGTACCATTGGTCG
CGATCTGAACGTAATGCATCACCAGTTAATGCATTCAACTCTTACAGCAG
CTACTCCCGACATGCGCAGGAAGTATGTTGAGGAGCCTGTAAGCActcaa
aatagaaatttttatctacATTAGATTTAATTTAAGCCTCGAGATTGGTT
GATCCTCTATCTCATTCAGTACATGAaacgttttgtttttaagtGTTCTA
AACAAGCTTGAAATTAGACCAAgtctaaaaatgaattttgaaagtctttt
caaataattattgtttgacctctttcattttttgaaaggaTAGCAATTAA
GTataatttgtttatattttgtatATATTGTTAAAataggatttaaaaaa
aaatgtcacAGACATAACATAAACATATCTATATAGTGTTTGAATGTAAC
AAAATTTTATTATATAACGTTTTTTCAACAAATTGTACATTTAACatagc
tttttattttttggactttacaGTATATTAATTTTCCCCGTTCTATTATG
TATATGTATAAATATGGCACTTTTTAGtagtaaaatatataaaattgaaA
TCGTATTGTGTAAAGcttaagtttaaaaaaagtgtctcagcaaaacacaa
ataaaattgaaaatttttatcaaaaattgtaaCTTGTAGTAATATtattc
ctttttatatattttctggGTCTGCAATTtattttgtataatatttttgt
tttatcattACATTTTAATGATTACCCATTATGGTGGACAGAAGAAATAG
ATgccatttttaaatcaaaaaaaaaaaaattattatattgtcacttcatt
tttgtttcattatttCGATTGGATACacactttccaaaaaaaatcatcct
tcTAATATTCTTATACAGTGTGTATTCTTAGAGATGTTATTCTCAGTTAT
CTCAGCTTCCATTTTGTCTTACTGTGATCTCTGAGATTAATTAAATTGCT
GTCGATACTCGATAGTGATGAAATAGACGGACAAAATCGCTTTACGTGTA
TAAATACAGGAATAAATTATAAGGGGACTTAGTTATGAAACTAGAAGTGT
ACTTGCCTATCCTTTTCACTGGTCTAAATACAAATTTGTTGATTTAAGAC
TATGCTACGTGACAGTAAAGTTTGGAGTAATCTTTTTCTGGGGTAGTGCC
AAGTTCATTTGCATCAGTAGCTGGTGaacggtttttttttaagataagCA
AAATTGATAATAGAATTTCAGAGATAACGGGTCTATTTGTGCAAAGACTa
acgaaacaaaaacattcaaattccTTTGCTTACTAATTAAAGGAGTGTTC
AGTATTATCAACTAATACCTGTTTTTCTGTCAACAAAAGCG Coding sequence (CDS) from alignment at scaffold_486:240170..242660+ >TCONS_00068610 ID=TCONS_00068610|Name=TCONS_00068610|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_486:240170..242660+ (Clytia hemisphaerica)
ATGTTTACTGAAATCAACTCTGCTATCAAATTTTTGGTCAATGAACTTGC
ACAAAAGCTTGGAGAGTTTCCAGAAGAGACATCTGAAACCTTGAAGAAAA
GTCTGAGAGAACACTTGATCGAAAGAATCGATGGTCATTGGTACCCGAAC
AAGCCAATCAAAGGCAGTGCATATCGATGTCTGAACATCAGTATTGACGA
TGGATCTGTCGACTCTGTCTTGCTAAAAGCTGGAGAAGAAATTGGAATCA
CAAAAAGTGGAATGATGGCTGTTTTCCCAAAAGGACTTGCTTTGTGGATT
GACCCAAATGACGTCAGTTGTCGACTAGGTAAAGGTgctattttcccaat
tttccgAAAGATTGCTGAACAAAAATCAGCCAGCCCAACACCAAATGTTG
CCCCTCTCAATGGTCAAAGAAGACCCCAACAACGTCCACGATCCATCTCA
CCACCCCTCTCCAGTACCAATCAATATAACTCCTTCCAGCCCCAACAACT
AACACGCCCACGATCAACAACTCCCCCAGGATTTACCAAAGCTAATGCTG
GACAAATGTATCAGCAAACAGTGAAGAAGAACCACTCTTTGGACAACCTT
CACAAGCTTTGGGATACCATTCCCAACACCACCAGCTATGTGCCATCTAC
GTCCATCTACCAAGCACCTGCTGTTTCTACTGCACGTCATTACCATGGGC
AGCAACAACAAAAACGACCGGATACTGTTTATTCCTTCAATCAATACAGT
ACCTTTTACAACTCTACTTCTATGAAGAAGAAATATAATAACAGCAGCAG
CAACTATAACACTGCTGCTTATTACAAACAAcagcagcaacaacaacaac
aacaacagcaaaaaCAAATGTGGCAAGATGACGATACTTACAACAAGTAC
CATTGGTCGCGATCTGAACGTAATGCATCACCAGTTAATGCATTCAACTC
TTACAGCAGCTACTCCCGACATGCGCAGGAAGTATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068610-exon-scaffold_486-1491911889:240170..241855 | TCONS_00068610-exon-scaffold_486-1491911889:240170..241855 | Clytia hemisphaerica | exon |
| TCONS_00068610-exon-scaffold_486-1510915933:240170..241855 | TCONS_00068610-exon-scaffold_486-1510915933:240170..241855 | Clytia hemisphaerica | exon |
| TCONS_00068610-exon-scaffold_486-1575043694:240170..241855 | TCONS_00068610-exon-scaffold_486-1575043694:240170..241855 | Clytia hemisphaerica | exon |
| TCONS_00068610-exon-scaffold_486-1491911889:241918..242660 | TCONS_00068610-exon-scaffold_486-1491911889:241918..242660 | Clytia hemisphaerica | exon |
| TCONS_00068610-exon-scaffold_486-1510915933:241918..242660 | TCONS_00068610-exon-scaffold_486-1510915933:241918..242660 | Clytia hemisphaerica | exon |
| TCONS_00068610-exon-scaffold_486-1575043694:241918..242660 | TCONS_00068610-exon-scaffold_486-1575043694:241918..242660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:240170..242660 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002087 | Anti_prolifrtn |
Blast
BLAST of TCONS_00068610 vs. Swiss-Prot (Human)
Match: BTG1 (Protein BTG1 OS=Homo sapiens GN=BTG1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.013e-17 Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 2
Query: 242 MFTEINSAIKFLVNELAQKLGEFPEETSETLKKSLREHLIERIDGHWYPNKPIKGSAYRCLNISIDDGSVDSVLLKAGEEIGITKSGMMAVFPKGLALWIDPNDVSCRLGK-GAIFPIFRKIAEQKSASPTPNV 640
M EI +A+ F+ L K G E +T +SL+E L E HW+P KP KGS YRC+ I + +D ++ +A + IG++ + + P L LW+DP +VS R+G+ G+I ++ S + NV
Sbjct: 11 MIGEIAAAVSFISKFLRTK-GLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCIRI---NHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLYEASPAGGSTQNSTNV 140
The following BLAST results are available for this feature:
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