TCONS_00068636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068636
Unique NameTCONS_00068636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068636 ID=TCONS_00068636|Name=TCONS_00068636|organism=Clytia hemisphaerica|type=transcript|length=2665bp
tagcaattgaccaaaaaaaaagatatatgaGATTACATTTTACGTTTGAA
AGATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAAACCAAAGGAA
AAACCAAAaacgaagaaagaaaaacacatGTATCCCAGAAAGCTAGTCAT
TCGAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAAGAAGAGCTAG
GAAACATTCCAGAATATGAATACTTCTATTTCACTACTGGTGACACAAGC
TTTGGTATGCAACCATATTCAAGAGCATACATTagcttcaaaaattatga
cGATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTTTTCTATGACA
CAAGAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACCGTGTCAACTT
GTACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAACACTGGAAAA
GGATCCAGAATTCATTCAATTCTTGGAATCGTTGGACAAAGAAGAAGAGA
AGCTACCGAGTGCTGAGATCTACATCGAAGAAATTGAAGCAGCCAAAGCT
ATCGATAAAAACAAGGTGAAGTTTACCACGCCATTGATCGATTATTTGAA
AGAGAAGAGAGATGTTCGGTTAGCTGCCATTGCCCAGaaagagAAGGAAC
GAAAAGAAAGGGAACAAAAGAGAAGAGAACAACGTGACAAGAAgcaaaac
aaacacgaagaacAACGCAGCGAAAGAAAATCTACCGACAGATCATCCAA
TCGTGATTCGAAGAAAAATGACGAACGAAAAGACAAATACAAGGACAAAG
AGAAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAAGACAAGAAAGAC
AACAATACAAAACAACAAGACAGGTCGTCCTCAGCAAGCAACAACAGTAA
AGATAAAGACGATCATCGcgagaaagagaagaaagaacGCCTGGGCGAAG
GCGGAGGCGGGGGCGGGGGCGGTAAACGTGGACCACGTGAACGAGCCAGC
GACAGAAAAAAAGGTCGTAACAACAATGACAACCGACAAAATGAGCAACG
CTCCTTATCATCAGCCAAAAACGAGAAATATCCGTCCTCGTCAAAAGATC
AAAGTAAAGACACGACAAAAGACAAaagttcttcttcttcatcgtcGTCA
AATAAAGATTCGTccaaagaatcttcgaaaaaagaaaacagacgCTTGAC
ACCTCCCGAAAAAGGGTCCAGAGGAGAATCACCAGAGAAGTCAGCAAAGA
AAGACAAACGGAACAAGGAACGTGACACCAGCGACGATACACCAACCTCG
TCCTCCACAACCGCATCTCAGGCCGCATCTAAAGACAATACGCCAGAAGC
TGTAAACTCCTCTGAGAAAGCAAGCCCGAATAAGAATAATCGAAAGCCAC
GACCTGAGATGAAAATCTACCGACCACCATCAGAACGGCCCTCTTCTGGT
TCTTCTAaaaatgtgacgtcatcttCAGAGAAAGATTTCGACGACCGTTC
ATCCAAGGATTCGTCATCCGACAGCAAACGAGGAAGTAGTACGTCTTCCA
AATCAAATGACGGTGGAAGTAAAAACAACAAGCCACCGCGATACCGTGAC
GATCGCCGATCCAATCGTGATCGTGATCGTGATCGTGATCGTGATAGGTA
TTACGATAGGCACGATCGATACAACGACAGTCACGAAAGTCGACATTATT
CCGATAACCGAAACAGCAAACGGGGTTCCGATTATAACGAAAAATCGGGA
AACCGGGATAAAGAGAAACGTGACGATTCTTCTTCAACACGACCtcaatc
ttccaaaaacaaaaataacgaATCTTCGAGTTCGACAAAAAAATCTTCAT
CACAGAAAGATGTCTCGGTCACCGTGAAAAAAGACGTTGACAAAGAGCGC
GAGAGAGAATTAGAACAAGAACGCTATCGAATGAATTGGCTaggtaaaga
ataaaaagacatTGTATTTTATCAGAGGGGTACTAGGATTGGcaaatgag
gggtatgtgcggacgggacctccggaAACCGATGCTTAgtgagactgatt
tttgctgaaaatacagactttttgaaaaaatctcttcgattttcggaaaa
tttcctacccttagatGTTAGAgagcttttttacgttttttttgtcTCGA
AACcgaaaaaaatcctaaaaatcgtgaattagAGCAACTAATTAAACATT
TTCTAATGTTTGCAACCCTAGGAGAGAcattgaaaggtgaaaaaccgacc
tttaccGTCTGCACATACGCAGCACCTATTTTTGTCTAATTACTCCCCCT
CCCCCGTATTGTATAAAGTATTCTACCTTTAActtagtttttatttctgc
tCTGTATATTtactgaaattttgtttttgatctcTTTGTGAATCATTGAA
TTATCTATcattgaattgaattttgtGTTGTGATTTGTATAAatattctt
tgttttcattGAACATTTTTATCGCAATTTCTTTGTGAATCCTGATTATT
TTACTGGTTAAGTACACCAGGTTTTAAATCCAAAATCTTTTGTCACATTT
TTTTGTCTGTTAATTCATATGCTGAATAATAATAGAATTAATCAAATAAT
CATTACGCTAGTTGAAAACTTTGAACGCAAATAACGCCCTCCAATTGTGT
ATAAATGAGTGCCGG
Run BLAST on NCBI

protein sequence of TCONS_00068636-protein

>TCONS_00068636-protein ID=TCONS_00068636-protein|Name=TCONS_00068636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=633bp
MGKLASDTTVDQKPKEKPKTKKEKHMYPRKLVIRRLPTSLNEETLKEELG
NIPEYEYFYFTTGDTSFGMQPYSRAYISFKNYDDVYDFRNKFDGHLFYDT
RGREFSAVVEFAPCQLVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEK
LPSAEIYIEEIEAAKAIDKNKVKFTTPLIDYLKEKRDVRLAAIAQKEKER
KEREQKRREQRDKKQNKHEEQRSERKSTDRSSNRDSKKNDERKDKYKDKE
KEESNSKSDKRKDKKDNNTKQQDRSSSASNNSKDKDDHREKEKKERLGEG
GGGGGGGKRGPRERASDRKKGRNNNDNRQNEQRSLSSAKNEKYPSSSKDQ
SKDTTKDKSSSSSSSSNKDSSKESSKKENRRLTPPEKGSRGESPEKSAKK
DKRNKERDTSDDTPTSSSTTASQAASKDNTPEAVNSSEKASPNKNNRKPR
PEMKIYRPPSERPSSGSSKNVTSSSEKDFDDRSSKDSSSDSKRGSSTSSK
SNDGGSKNNKPPRYRDDRRSNRDRDRDRDRDRYYDRHDRYNDSHESRHYS
DNRNSKRGSDYNEKSGNRDKEKRDDSSSTRPQSSKNKNNESSSSTKKSSS
QKDVSVTVKKDVDKERERELEQERYRMNWLGKE
Run BLAST on NCBI

transcript from alignment at scaffold_486:296621..309407-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068636 ID=TCONS_00068636|Name=TCONS_00068636|organism=Clytia hemisphaerica|type=transcript|length=12787bp|location=Sequence derived from alignment at scaffold_486:296621..309407- (Clytia hemisphaerica)
TAGCAATTGACCAAAAAAAAAGATATATGAGATTACATTTTACGTTTGAA
AGATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAAACCAAAGGAA
AAACCAAAAACGAAGAAAGAAAAACACATGTATCCCAGAAAGGTAAATTT
CGAAACACACGTTTGTATTATATAAAGAACATCAAAATTTTTTGAATCCT
TTGAATGCTCTTAACTTTTTTGAGTTAAAAGCCTAAAAATGTTCTTAACA
TTTTCATCACCATTTTCTGAGTATTTTTGTCGAAATTTGTCCATTTTCCT
AAGAAATCGGGTGTATCGATTCCACAAATCCTTAGAATTCTTTGTGCGTT
CTTAATTCCTTAATTTTTGACAATCGAAGCCATAATATGTTCTTTAGATG
GTACATAGTTTGTTCTTATTAAAAAATGTGTGAAGAACACTTTTTTGATT
TGTTGTTGTTTAAAGTAATGTTTTTTTTGCGGAGAAACACGGTTTTCTTG
ACTGGATTTTTGTCGTTATTTTGTTGAAATAATTTATATGATTGGATAAG
TTGTTTTTTTTCAAAATAATTTTAATTTTTGTATTTGTAGCTAGTCATTC
GAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAAGAAGAGCTAGGA
AACATTCCAGAATATGAATACTTCTATTTCACTACTGGTGACACAAGGTT
TGATGGAAATTTCATTTATTATTGCCCGCCCTACATCCCGCCATTAAGTA
ATGGTGTCTTTTGGGTATTTCCCTCACTTTTTTTTCCCATGAAAAAAAAA
AAAAAAAATAAACCATGGAACTACGTACTTTTTTTCTTGTGTTGGTGGGA
TGGAGCATGTTGCATTGCACCAACGCGAAAAAAAGTTCTCGCGTCCCCAA
GCCTTTAGATATACTGATATTTTAGAACTGTGACCCAACACTTTTCATTT
GGTTTTTAGCTTTGGTATGCAACCATATTCAAGAGCATACATTAGCTTCA
AAAATTATGACGATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTT
TTCTATGACACAAGAGGTATAAATTTAACTGTTATAAGAGTGTTATCCTA
TTAACGATACACCAAGACTTCTCTTTGTTTTGTGTCAAAGGTCAAAGGAG
GTGTGTACTTTGGAAGGGCCAAAATTGACCAATATTTGGTTCCTCGTCCA
AAAAGTAACGAATATTCATGATGAAATGGATGAAAACCCATAATGCTATA
AAAGAGAAAAGCGTACAGTGTACTTTGACCATATGACAGCTTCAGTAAAA
ATAAAATAAAACTTAATCCGAATATTATTGACAAACAACAAAATTTTCAT
TTTTTGAAAAACTTTTGTTGTTTGTGATCTGACTTCACATTGATCCATGG
CAAAATCAATTTTAGAATTAAGTTTTATCTTGTACAATGTACTGATACTC
CTGATTTTCCACAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACCGT
GTCAACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAACA
CTGGAAAAGGGTGAAAATGCTTTCTTTACTTATTTACATCAAAAGAATCC
TTCGTCATTTGTGTAGTGCTATTTACAGTACACATATTACAGTACACTCG
TCAAAAACCGGTAAAACCTACTCCTCATTGGAGAAATCGGCTTAAAACTG
TCCAAGTGAGAAGAATATCCACATTCCCATTGGGTGGGATTTGGCCCCTT
TATTTTATCCTTGATAAAACGGGGTGTATTCTTTCTAACAAATATTTGTT
GTTTATCTAATTCTATCATTTGTTCCACACTTTACTCCCAAATCAATCAA
CAAACAACCACGACAATTCATGATATGCACCANTCAAAAATTATGACGAT
GTTTACGATTTTCGAAATAAGTTTGATGGACATCTTTTCTATGACACAAG
AGGTATAAATTTAACTGTTATAAGAGTGTTATCCTATTAACGATACACCA
AGACTTCTCTTTGTTTTGTGTCAAAGGTCAAAGGAGGTGTGTACTTTGGA
AGGGCCAAAATTGACCAATATTTGGTTCCTCGTCCAAAAAGTAACGAATA
TTCATGATGAAATGGATGAAAACCCATAATGCTATAAAAGAGAAAAGCGT
ACAGTGTACTTTGACCATATGACAGCTTCAGTAAAAATAAAATAAAACTT
AATCCGAATATTATTGACAAACAACAAAATTTTCATTTTTTGAAAAACTT
TTGTTGTTTGTGATCTGACTTCACATTGATCCATGGCAAAATCAATTTTA
GAATTAAGTTTTATCTTGTACAATGTACTGATACTCCTGATTTTCCACAG
GTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACCGTGTCAACTTGTACCC
AAAGAGAGACAAAAGAAAGACCACAAAACAGGAACACTGGAAAAGGGTGA
AAATGCTTTCTTTACTTATTTACATCAAAAGAATTCTTCGTCATTTGTGT
AGTGCTATTTACAGTACACATATTACAGTACACTCGTCAAAAACCGGTAA
AACCTACTCCTCATTGGAGAAATCGGCTTAAAACTGTCCAAGTGAGAAGA
ATATCCACATTCCCATTGGGATTTGGCCCCTTTATTTTATCCTTGATAAA
ACGGGGTGTATTCTTTCTAACAAATATTTGTTGTTTATCTAATTCTATCA
TTTTTTCCACACTTTACTCCCAAATCAATCAACAAACAACCACGACAATT
CATGATATGCACCACTGCAATATGACTTCAGGAAATTATGCTACTTTTCT
GTTTTTGTTCCACCCAATACGTCACTTTTTCTTTTGTTTAAGTGACGTAT
TGGGTGCAAAATTTTCAAAGTTCTCAGAAGACTCTCCAGTGGTGTATTCT
CAACTTCAGTTGAGTTAGAATCTGAGAATGTCTGTGTGTGTGTCTGTGTG
TGTGTGTGTGTCTGTGTGTCTGTCACCAAAACTTTGGGGCAGCCTGGAGA
CTTCAAAAATGGTCCGATTTGGCTGAAATTTTGCACACTTCATCCTTGGG
CCAATCCCTGGGGGTGTTTTTTTCATTTATTCAAAATTTCAATTTTTGGG
GCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAACACTTTGGGGCAGGC
TGGAGACTTTAAAAATGGCCCGATTGGGCTGAAATTTTGCACACTTGATC
CTTACGCAAATCCCTGGGGGGGTTTTTTTCATTTTTTCAAAATTTTAATT
TTTGGGGCCTGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGG
CAGGCTGGAGGCTTTAAAAATGGTCCGATTGGGCTGAAATTTTACACACT
TGTTCCTTGGGCAAATCCCTGGGGGCGTTTTTTTCATTGTTTCAAAATTT
TAATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAACACT
TTGGGGCAGGCTGGAGACTTTAAAAATGGCCCGATTGGGCTGAAATTTTG
CACACTTGATCCTTACGCAAATCCCTGGGGGGGTTTTTTTCATTTTTTCA
AAATTTTAATTTTTGGGGCCTGGGACGAGTTTTTCGCCAAAACGAGGCTA
AAACTTTGGGGCAGGCTGGAGGCTTTAAAAATGGTCCGATTGGGCTGAAA
TTTTACACACTTGTTCCTTGGGCAAATCCCTGGGGGCGTTTTTTTCATTG
TTTCAAAATTTTAATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACG
AGGCTAACACTTTGGGGCAGGCTGGAGACTTTAAAAATGGCCCGATTGGG
CTGAAATTTTGCACACTTGATCCTTACGCAAATCCCTGGGGGGGTTTTTT
TCATTTTTTCAAAATTTTAATTTTTGGGGCCTGGGACGAGTTTTTCGCCA
AAACGAGGCTAAAACTTTGGGGCAGGCTGGAGGCTTTAAAAATGGTCCGA
TTGGGCTGAAATTTTACACACTTGTTCCTTGGGCAAATCCCTGGGGGCGT
TTTTTTCATTGTTTCAAAATTTTAATTTTTGGGGCCTGGGGACGAGTTTT
TCGCCAAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGACTTTAAAAATG
GTCCGATTGGGCTGAAATTTTGCACACTTGATCCTTGGGCAAATCCCTGG
GGGCGTTTTTTTTTATTTTTTCAAAATTTTAATTTTTGGGGCCTGGGGAC
GAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGTTGGAGACTTC
AAAATTGGTCCGATTGGGTTGAAATTTTGCACACTTGACCCTTGGGCAAA
TCCCCGGGGGCATTTTTTTCATTTTTTCAAGATTTTGATTTTTGGAGCCT
GGGGACGAGTTTTTAGCCTAAACGAGGCTAAAACCCAAACTGCTATAATT
TTTCTTAAGCCATTAAGTTTACATTTGGGCCTACGAATGATTTCAAAGAT
ACTGAAGTTGAGCCAGTGCGGTTAGCACGTTCGACAGTATCATGAATTCC
TTTTATATTACTCAGATCCAGAATTCATTCAATTCTTGGAATCGTTGGAC
AAAGAAGAAGAGAAGCTACCGAGTGCTGAGATCTACATCGAAGAAATTGA
AGCAGCCAAAGCTATCGATAAAAACAGTAAGCTTTTTTTGCTTCAAACAG
GATGTTTAGAATGATATCCTCCTATTGGAATTTTATTTCTCTCTCACATC
ATCGATCAATGTTTGAAAGCCCAATAAGATGCTTACCTACGTGGAAACTA
AATTACCACTGGAATACAGATTGTGCCCCCTTTCCTTTTGTTCTCTCCTT
AAATTTAATATAAGTAAGTATATTCATCTGGTTGCTGTTGGTGGAGCCGG
GAGTGGGGGAGTTAATCACCTTTTCTAATTGCGCTGACCTGGGAGATTGC
TAGGAGTGCTAGGGGGAGAACTACATCTACTCTCGGCATCTATTTTAACT
AACCAACCTATGTCAGATTACCCAATCTAAGCTACTCGCACACCGAGTTG
GCGACCCTGTCATTCATCAGCAGCCTTAGTAATATCTGGGATACATGGAT
ATTTTGTGTATTTTCTTTAAAGTATTGTTTTGCTTTTCGTAGAGGTGAAG
TTTACCACGCCATTGATCGATTATTTGAAAGAGAAGAGAGATGTTCGGTT
AGCTGCCATTGCCCAGGTAACGTCCAGTATAATGATATGTTTTGAAAAAA
CCTTGCAGAACCTTGCTATATTATCAAGAAAAGCGAGAAGTACAATCATT
AGGAATAATTAAAATCCATAATTCGAACACACATGGGGAACACAAATTTG
TTCGAGTTAAGGAAATTTACAGGGGAGCTATAATGGGTGTAGTAAATAGC
GATATTCCAATCAACTTGAAAAAGTTTTTTTTTTTTTATGTTTTCATTTG
TTGTTTTTTTTTCAGAAAGAGAAGGAACGAAAAGAAAGGGAACAAAAGGT
ATATTTTCCTATGAGGACTTTAAGGTTACAATAAATAATAAACAGTAGAC
AAAAAGAACGACAAAATTCGACGTCCGCAGCCCCTACCCGGATAGTTTGT
CCACCCGTACGATTTGATTCCTCTTTGTTTATGAACGACTTATGGCTTTA
AAGAACGATAAATTTATGCCTGTGTGTTATTAAATGCAGGAATTGTCAGT
CAAACTCACTGTATTCGCTTATTGTAGAGAACTTAAGCCATCTTAGGTGT
CGTCTTCCTAGGGTCAGGGGGATATAGGTTTTGAGACCAAAGGGAGGTAT
AAGGGGAGGAAAAATATCTGAAACCAGGGTTGGGAGCAACTGAGGAGGAG
CAATAGGAAATATACCGGGTGTGCCACAAATAAGTTACCCTCTTTGAATT
TATATTGCAGGCAGTAGCAGAAAGATTTTTCAAAGATTGTTTCGGAATCA
TTCAGAGGAAAGCCTAACTTAAAATTTGGTGTATTACTTTTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTGCCACAAATAAGTTAC
CCTCTTTGAATTTATATTGCAGGCAGTAGCAGAAAGATTTTTCAAAGATT
GTTTCGGAATCATTCAGAGGAAAGCCTGACTTAAAATTTGGTTTATTACT
TTTTAATTTTAATCCATTGGTTCAAGAGTTATGTTCAAAAACCTAAAATG
TCAATTTTTAAACATGTCAAAAAAGGCTAAAAACAAGGGTATCGTTTTAT
GAGAGAAACGACTTCTTTTACCAAGTCTTGCTCCTTGTAACACTCTTTAT
CTATTCTTTATCTCAATTTTTTTGTTTTTGTTTTTTTACTTCTGTTTTCC
CTTGGGCATAGACATAATGCAAAATGCCTCAACCCTCACAAAATTTTCAA
CATCTTTCCAAGAGTTTCCGAGAGTTTTTCTGTATGTGCATCATCGTCGA
GAAAGGTAGATAAGGTGAAAGCTTTGAGCAAAAATGCCTTGTTTGAGCTG
CTACAGCTCATATCGATTCACAGATGATGGAATGTTTTTAAATGGATGCC
TAACCTTGTAAATAAATGCTTTTTACATAATGGAAATACATTTCCTGATG
CATAAAATGGGTTCGTGTCTCTATTCATTACAGCCAATTTTAATACTCTC
GTTTTTGCCTTTTTTGACATTTTTAAAGATTGATATTATTTATTTTTGAA
CATAACTTTTGAACCAATGAAGTAAAATTAAAAAGTAATACACCAAATTT
TAAGTCAGGCTTTCTTCTGAATTATTCCGAAACACTCTTTGAAAAATCTC
TTTTCTACTGCCTAAAATATCAGATCGAAAAAGGTAACTTATTTGTGGCA
CACCCGGTAGGAGACCACTTTTAAATTGTTAATTCAAAAGTTGAAAAAAG
CGGATTTGCTGAAATACAACTAGACATATTTTTTTTAATTATTTTAACCA
GCAATATCAAAGAGTCTTACTTGAATACAAATCCTTTCAATTAATCCGCT
TCAGCACACCTTTTAGACCGTAGTCACCAATTGCCGCGCGGGCATTTTTT
TTGTTCCAGTTCTTTTTTCGCCCCTATAGACAACAATAGAAAAAGGTGTA
AAAAAAGGTTTGGATCGAGTTTAGAGGGATGATTAAATAATAAAGTGGCA
CGCGCCTGCCCGCGTGACTATGGTCGAAAAGGTGTATTCATTTCAGTTGT
TTGTTTCATACAAAGTTGTCTCCCTTCATTCTTCTAGAGAAGAGAACAAC
GTGACAAGAAGCAAAACAAACACGAAGAACAACGCAGCGAAAGGTATGTT
GTTGTATTTTATTTTAACAAAGTTGTGAATACGTGAATACGTTAACAACA
ACAATTTTACAGTTGACTCTCGCTAATGCGAACTCGAACGGCGAATCTTG
TTCATTCGAATTACAGAGAGATGTATTTTAAGAGGACTTCTCCTTGGCGG
GGTCTGGAAACAAGTTTGAATTATAGAAATATTTGAATATTTAGAAGTTA
GATGATACAATAATGACCGGTTAGTGAGGGCTGTACTGAGGACCGAGCTT
GCGAGGTTGTTACGTCGACCGAAAAAAATATTCTCCATAGTTAAAAAAAT
TTGAATTTGTTTTTCGAGAATTACTTCAGGCGTACAAACTTTCTTAACTA
TGGAGAACATCTTTTAGAAAATCTACCGACAGATCATCCAATCGTGATTC
GAAGAAAAATGACGAACGAAAAGACAAATACAAGGTATGATTATATTAAC
AATATTAAAACAGTTTTCTCACGTTTCACTCAAAATATCAAAAGAGGACA
CTACACCGAATCTCAAAGTTATTTTTGACAAACCATAACATCAGAGGCTC
TTATTCGGATTTATTTTATTAAATCTTTGTGAACTGGTTGGATAAAAATA
TTTTTTCAAGTACCAAGTTACCATTCTCTCTCTCTTTCAATCCTAATTTA
ATTTTTCCAATTGTTCGCTAAAATTATGTTCCGATGAAGAACCGATGGTT
TAACTTCCCCATCGTATAAGACTCTGGATTGGAGGTAAAACGAGATCTCG
TTTGGTAAAATGTGCGCGTGATCTACTAAATTGGTCCCTATATGGCTAGA
AACATTTTTGAAAATTCAGTGTTTTTTAGAGGTTCGTGCATGACACTAAA
TTCTCCAGTTTCCTCAGATCGCTCCGTTTTCGTACTAAATCCTTATGTTG
CAGCAAGAGAACTCCTATGATTGGTTTGTTTTTCCCGTTTTCCCGCGTGT
TTATTTATTTGAACCGGTTGCTATTACCTACCTACAAAAAGCTTTCTGAC
CTTTCTCTGCTTGCCAGCTTGCTGTGGATTGGAATGATATTGATTTGGAT
CATCCTGGCAAGAATATTGTTGTTATTTATTTTATCTAATTAACAAGATT
CTTTCTCGCGTCGCTAGTTGCCTTAGGTGACGGTCTGGGTTATATAATAT
CAAATTCAATCTTTGAAAATGAAATCGGATCCTAGAATGACTGAGAGTGA
GAAAATTACCCATCATGTAGACGATGCTATCGTCCGTGTAATATGTTATG
ATGATATTATGATATAACATAGTTGTATATTATAAAACGTAATATGTTGC
GTGGCGGAAAAATAGAGTCTGTGTTTATATTGAGCCCCTCCGACTATTCT
TGTGCGTGCGGACAAAATTTCCGCCCGGAAATTCTTTATTATTTGAATTT
GTCTTAGACTATAGCAAAGTCTACCCATCATGTGTCTATTTTCAGGACAA
AGAGAAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAAGACAAGAAAG
ACAACAATACAAAACAACAAGACAGGTCGTCCTCAGCAAGCAACAACAGT
AAAGATAAAGACGATCATCGCGAGAAAGAGAAGAAAGAACGCCTGGGCGA
AGGCGGCGGCGGTGGTGGTGGCGGGGGCGGTAAACGTGGACCACGNAAAG
AAAGAACGGCTGAGCGAAGGCGGAGGCGGGGGCGGGGGCGGTAAACGTGG
ACCACGTGAACGAGCCAGCGACAGAAAAAAAGGTGCGTACAACAGTCTCC
ATAGCTCGAACACACACGGGGAACACAGATTGGTTCGATTTATAGAGTAA
GGTTTATAAGGCATTATTAACTGAAAAGACCATAAGATTTGTCCGAGTTA
AGAGATATTCGAATTATAGGGGTTCGAGTTGAGTAGACTCAACTGTAGTT
GATGATGTTTTTGTAACAAAGAAGTTGTCGTTTTCATTCTTATGCAGGGG
ACACGGTGTATAACGATTCTGTCCAGGACTATATTTAGCTGCTTGGTGGG
AGGAAAGGCCGGGGGCCTGGGTCGAGTGATGCTTTTTGTCCTGGGTAAAA
ACAACTCAATTTGGCTAGTGAGGTTTATTCTTAGTGACATGATTTTATGA
TATACGAGTGAGCTTTTTCTCATTTATATATATGACATATCTCTTGCCAC
CGAACGAGTATTATGGCTTTTTTCATCCTCGTATTCATCCTCATACTAGG
TCGTAACAACAATGACAACCGACAAAATGAGCAACGCTCCTTATCATCAG
CCAAAAACGAGAAATATCCGTCCTCGTCAAAAGATCAAAGTAAAGACACG
ACAAAAGACAAAAGTTCTTCTTCTTCATCGTCGTCAAATAAAGATTCGTC
CAAAGAATCTTCGAAAAAAGAAAACAGACGCTTGACACCTCCCGAAAAAG
GGTCCAGAGGAGGTAAAAATGATTCCCTTGCAACTACCTTATCGGCCAAA
ACTTAGTCGGCCCTAAGTGACTAAATTTTGGCTTGGTGACTAAAATTAGG
GCCGAAGGCCGACTAAGTTTTGGCCGATAAGATATACAGTATTTGTACGA
TTAATCAAAAATTTACCACCTTAGAATTTCGCAAAATTCAGCAAAATATT
AAAAATCTGGGATAATCACGCCACATAAAAACGTCTCTGTTTCGTCATTA
AGACGTCGTCCTGTTTACTTGGATAGCATAAAAGAATTCGCAAAGCATTG
TTATTCATTGGTGAGAAGTACTAGTATCTATATCCATTAGGGAATCGAAT
TTACGATAATTCCAATTTTATCCATATAATCCTTCAGAAAGAAACCTATG
AAATGTATTTTTTAAATACTATAATGCAACTATTATCATCTCTCTTTACA
GAATCACCAGAGAAGTCAGCAAAGAAAGACAAACGGAACAAGGAACGTGA
CACCAGCGACGATACACCAACCTCGTCCTCCACAACCGCATCTCAGGCCG
CATCTAAAGACAATACGCCAGAAGCTGTAAACTCCTCTGAGAAAGCAAGC
CCGAATAAGAATAATCGAAAGGTAACCAAAAAATTCTTGAAAATGTTAGT
ATAACCCCTGGAAAATTGCTAAATGTGCAAAAAAATTCTTCTTGATACCT
TGATGGTGGACGAACTATAACCTTTTAGGTTATAAAAATAGTCTTTTACC
CCCTGGAAGTTTAAAATAATTTTGCCACTTGGAAAAATAAAAAACAACTT
CCATTGAAAATTCTTCTTCGGATTACCTCTTTGAAAAGTTCGTCCACCCC
CCCCCTGTATGGATATAAAATAAAATGAATGTAAATTAGCCTGCAAACTG
CAAAGTGAATGCTACTGTGCTACTACTGTACCTACTACTCTTCTATACTT
GAAAAATATGAAGATAACAAGTAGAATTAACTTTTTTATTACAGCCACGA
CCTGAGATGAAAATCTACCGACCACCATCAGAACGGCCCTCTTCTGGTTC
TTCTAAAAATGTGACGTCATCTTCAGAGAAAGATTTCGGTAAGCCTCATT
CTTCATGTCCATCATGAATAAACACAACAGTTTGTTTTGTTTTGGTTGAA
AGCAACAATCGTCAATCTGTTTGGAATCTGATACCTTGGCGGAAACTAAT
TTTGACGAGCGGCAAAATTCCTGAAAATTTTTAATTTTGGCGAGAACTTA
TTTTGGCGAGTGGACAAAATATTTAATTTTGGTGGGTCTTAATTTTGGCG
AATTTTGTCTAAATGCGCCAAATTCGCCAAAATTAGTTCCCGCCAAAATA
AGTTCCCTTAAGGTAGTTTCCATTTCTATTCAACCCATAACTGGAAATGG
AATTTAAATCGTTTTGGTTATTACTACAGTGGAGTCTCTATAATTCGAAC
TTCAACAACTCGAATCTCTCCTTGACTCGAACGAGTTTTCTGGTCCTACA
AACTACATAACTCGAGATTTCCTAACTCAATAAATTTGCGTTATAGAGAC
TCTACTGTACATAGCTTAGACGGTATAGAGTATGATACAGCCGTGTATAG
GCTACAACCTAATTTTAACTAGCATCCAAGATTATGCAATTTGTTGACTT
TGGAAAACGACCTTATAAAATTTCGTTAAAATTTTTGAGATTCTTAAGCT
GGGTGTCCACTGAAAAAGAATAAGTTCGTCGCAAATACCAGACATATGAT
TTTTTCCAGTGGACACCCAGCTTTACTGTTGTGTATATAAGGTATCGGTT
TCACGTCTCGCAATCTTAGCGAGAGCCAAGTCTGTCAGATTTTAGTTGAA
ATATACAATATTCCCCTTAAAATTTCAGTTAATATGAAAAGTATATATCT
TTTCTGATTTAGACGACCGTTCATCCAAGGATTCGTCATCCGACAGCAAA
CGAGGAAGTAGTACGTCTTCCAAATCAAATGACGGTGGAAGTAAAAACAA
CAAGCCACCGCGATACCGTGACGATCGCCGATCCAATCGTGATCGTGATC
GTGATCGTGATCGTGATAGGTATTACGATAGGCACGATCGATACAACGAC
AGTCACGAAAGTCGACATTATTCCGATAACCGAAACAGCAAACGGGGTTC
CGATTATAACGAAAAATCGGGAAACCGGGATAAAGAGAAACGTGACGATT
CTTCTTCAACACGACCTCAATCTTCCAAAAACAAAAATAACGAATCTTCG
AGTTCGACAAAAAAATCTTCATCACAGAAAGATGTCTCGGTCACCGTGAA
AAAAGACGTTGACAAAGAGCGCGAGAGAGAATTAGAACAAGAACGCTATC
GAATGAATTGGCTAGGTAAAGAATAAAAAGACATTGTATTTTATCAGAGG
GGTACTAGGATTGGCAAATGAGGGGTATGTGCGGACGGGACCTCCGGAAA
CCGATGCTTAGTGAGACTGATTTTTGCTGAAAATACAGACTTTTTGAAAA
AATCTCTTCGATTTTCGGAAAATTTCCTACCCTTAGATGTTAGAGAGCTT
TTTTACGTTTTTTTTGTCTCGAAACCGAAAAAAATCCTAAAAATCGTGAA
TTAGAGCAACTAATTAAACATTTTCTAATGTTTGCAACCCTAGGAGAGAC
ATTGAAAGGTGAAAAACCGACCTTTACCGTCTGCACATACGCAGCACCTA
TTTTTGTCTAATTACTCCCCCTCCCCCGTATTGTATAAAGTATTCTACCT
TTAACTTAGTTTTTATTTCTGCTCTGTATATTTACTGAAATTTTGTTTTT
GATCTCTTTGTGAATCATTGAATTATCTATCATTGAATTGAATTTTGTGT
TGTGATTTGTATAAATATTCTTTGTTTTCATTGAACATTTTTATCGCAAT
TTCTTTGTGAATCCTGATTATTTTACTGGTTAAGTACACCAGGTTTTAAA
TCCAAAATCTTTTGTCACATTTTTTTGTCTGTTAATTCATATGCTGAATA
ATAATAGAATTAATCAAATAATCATTACGCTAGTTGAAAACTTTGAACGC
AAATAACGCCCTCCAATTGTGTATAAATGAGTGCCGG

Coding sequence (CDS) from alignment at scaffold_486:296621..309407-

>TCONS_00068636 ID=TCONS_00068636|Name=TCONS_00068636|organism=Clytia hemisphaerica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_486:296621..309407- (Clytia hemisphaerica)
ATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAAACCAAAGGAAAA
ACCAAAAACGAAGAAAGAAAAACACATGTATCCCAGAAAGCTAGTCATTC
GAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAAGAAGAGCTAGGA
AACATTCCAGAATATGAATACTTCTATTTCACTACTGGTGACACAAGCTT
TGGTATGCAACCATATTCAAGAGCATACATTAGCTTCAAAAATTATGACG
ATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTTTTCTATGACACA
AGAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACCGTGTCAACTTGT
ACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAACACTGGAAAAGG
ATCCAGAATTCATTCAATTCTTGGAATCGTTGGACAAAGAAGAAGAGAAG
CTACCGAGTGCTGAGATCTACATCGAAGAAATTGAAGCAGCCAAAGCTAT
CGATAAAAACAAGGTGAAGTTTACCACGCCATTGATCGATTATTTGAAAG
AGAAGAGAGATGTTCGGTTAGCTGCCATTGCCCAGAAAGAGAAGGAACGA
AAAGAAAGGGAACAAAAGAGAAGAGAACAACGTGACAAGAAGCAAAACAA
ACACGAAGAACAACGCAGCGAAAGAAAATCTACCGACAGATCATCCAATC
GTGATTCGAAGAAAAATGACGAACGAAAAGACAAATACAAGGACAAAGAG
AAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAAGACAAGAAAGACAA
CAATACAAAACAACAAGACAGGTCGTCCTCAGCAAGCAACAACAGTAAAG
ATAAAGACGATCATCGCGAGAAAGAGAAGAAAGAACGCCTGGGCGAAGGC
GGAGGCGGGGGCGGGGGCGGTAAACGTGGACCACGTGAACGAGCCAGCGA
CAGAAAAAAAGGTCGTAACAACAATGACAACCGACAAAATGAGCAACGCT
CCTTATCATCAGCCAAAAACGAGAAATATCCGTCCTCGTCAAAAGATCAA
AGTAAAGACACGACAAAAGACAAAAGTTCTTCTTCTTCATCGTCGTCAAA
TAAAGATTCGTCCAAAGAATCTTCGAAAAAAGAAAACAGACGCTTGACAC
CTCCCGAAAAAGGGTCCAGAGGAGAATCACCAGAGAAGTCAGCAAAGAAA
GACAAACGGAACAAGGAACGTGACACCAGCGACGATACACCAACCTCGTC
CTCCACAACCGCATCTCAGGCCGCATCTAAAGACAATACGCCAGAAGCTG
TAAACTCCTCTGAGAAAGCAAGCCCGAATAAGAATAATCGAAAGCCACGA
CCTGAGATGAAAATCTACCGACCACCATCAGAACGGCCCTCTTCTGGTTC
TTCTAAAAATGTGACGTCATCTTCAGAGAAAGATTTCGACGACCGTTCAT
CCAAGGATTCGTCATCCGACAGCAAACGAGGAAGTAGTACGTCTTCCAAA
TCAAATGACGGTGGAAGTAAAAACAACAAGCCACCGCGATACCGTGACGA
TCGCCGATCCAATCGTGATCGTGATCGTGATCGTGATCGTGATAGGTATT
ACGATAGGCACGATCGATACAACGACAGTCACGAAAGTCGACATTATTCC
GATAACCGAAACAGCAAACGGGGTTCCGATTATAACGAAAAATCGGGAAA
CCGGGATAAAGAGAAACGTGACGATTCTTCTTCAACACGACCTCAATCTT
CCAAAAACAAAAATAACGAATCTTCGAGTTCGACAAAAAAATCTTCATCA
CAGAAAGATGTCTCGGTCACCGTGAAAAAAGACGTTGACAAAGAGCGCGA
GAGAGAATTAGAACAAGAACGCTATCGAATGAATTGGCTAGGTAAAGAAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042810XLOC_042810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068636-exon-scaffold_486-1575043694:309266..309407TCONS_00068636-exon-scaffold_486-1575043694:309266..309407Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:308711..308817TCONS_00068636-exon-scaffold_486-1575043694:308711..308817Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:308363..308448TCONS_00068636-exon-scaffold_486-1575043694:308363..308448Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:307456..307476TCONS_00068636-exon-scaffold_486-1575043694:307456..307476Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:306962..307057TCONS_00068636-exon-scaffold_486-1575043694:306962..307057Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:304782..304892TCONS_00068636-exon-scaffold_486-1575043694:304782..304892Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:304242..304315TCONS_00068636-exon-scaffold_486-1575043694:304242..304315Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:303960..303992TCONS_00068636-exon-scaffold_486-1575043694:303960..303992Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:302115..302170TCONS_00068636-exon-scaffold_486-1575043694:302115..302170Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:301674..301740TCONS_00068636-exon-scaffold_486-1575043694:301674..301740Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:300506..300662TCONS_00068636-exon-scaffold_486-1575043694:300506..300662Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:300376..300438TCONS_00068636-exon-scaffold_486-1575043694:300376..300438Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:299696..299908TCONS_00068636-exon-scaffold_486-1575043694:299696..299908Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:299087..299256TCONS_00068636-exon-scaffold_486-1575043694:299087..299256Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:298620..298713TCONS_00068636-exon-scaffold_486-1575043694:298620..298713Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1575043694:296621..297795TCONS_00068636-exon-scaffold_486-1575043694:296621..297795Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:309266..309407TCONS_00068636-exon-scaffold_486-1510915933:309266..309407Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:308711..308817TCONS_00068636-exon-scaffold_486-1510915933:308711..308817Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:308363..308448TCONS_00068636-exon-scaffold_486-1510915933:308363..308448Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:307456..307476TCONS_00068636-exon-scaffold_486-1510915933:307456..307476Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:306962..307057TCONS_00068636-exon-scaffold_486-1510915933:306962..307057Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:304782..304892TCONS_00068636-exon-scaffold_486-1510915933:304782..304892Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:304242..304315TCONS_00068636-exon-scaffold_486-1510915933:304242..304315Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:303960..303992TCONS_00068636-exon-scaffold_486-1510915933:303960..303992Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:302115..302170TCONS_00068636-exon-scaffold_486-1510915933:302115..302170Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:301674..301740TCONS_00068636-exon-scaffold_486-1510915933:301674..301740Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:300506..300662TCONS_00068636-exon-scaffold_486-1510915933:300506..300662Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:300376..300438TCONS_00068636-exon-scaffold_486-1510915933:300376..300438Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:299696..299908TCONS_00068636-exon-scaffold_486-1510915933:299696..299908Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:299087..299256TCONS_00068636-exon-scaffold_486-1510915933:299087..299256Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:298620..298713TCONS_00068636-exon-scaffold_486-1510915933:298620..298713Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1510915933:296621..297795TCONS_00068636-exon-scaffold_486-1510915933:296621..297795Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:309266..309407TCONS_00068636-exon-scaffold_486-1491911889:309266..309407Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:308711..308817TCONS_00068636-exon-scaffold_486-1491911889:308711..308817Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:308363..308448TCONS_00068636-exon-scaffold_486-1491911889:308363..308448Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:307456..307476TCONS_00068636-exon-scaffold_486-1491911889:307456..307476Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:306962..307057TCONS_00068636-exon-scaffold_486-1491911889:306962..307057Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:304782..304892TCONS_00068636-exon-scaffold_486-1491911889:304782..304892Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:304242..304315TCONS_00068636-exon-scaffold_486-1491911889:304242..304315Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:303960..303992TCONS_00068636-exon-scaffold_486-1491911889:303960..303992Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:302115..302170TCONS_00068636-exon-scaffold_486-1491911889:302115..302170Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:301674..301740TCONS_00068636-exon-scaffold_486-1491911889:301674..301740Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:300506..300662TCONS_00068636-exon-scaffold_486-1491911889:300506..300662Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:300376..300438TCONS_00068636-exon-scaffold_486-1491911889:300376..300438Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:299696..299908TCONS_00068636-exon-scaffold_486-1491911889:299696..299908Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:299087..299256TCONS_00068636-exon-scaffold_486-1491911889:299087..299256Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:298620..298713TCONS_00068636-exon-scaffold_486-1491911889:298620..298713Clytia hemisphaericaexon
TCONS_00068636-exon-scaffold_486-1491911889:296621..297795TCONS_00068636-exon-scaffold_486-1491911889:296621..297795Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068636-proteinTCONS_00068636-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:296621..309407 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5884	10.9713	9.9721	5.72135	18.2804	13.5387	10.5005	7.04681	15.9445	16.0618	11.4724	11.1983	5.60913	7.21245	7.6218	9.64455	12.8714	10.5691	5.41826	6.39773	7.85969	9.01077	6.15637	7.02227	12.0174	9.23518	3.95257	3.61371	3.50325	4.0046
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00068636 vs. Swiss-Prot (Human)
Match: REN3B (Regulator of nonsense transcripts 3B OS=Homo sapiens GN=UPF3B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.031e-28
Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = 2 
Query:  140 KLVIRRLPTSLNEETLKEELGNIPEYEYFYFTTGDTSFGMQPYSRAYISFKNYDDVYDFRNKFDGHLFYDTRGREFSAVVEFAPCQ-LVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEKLPSXXXXXXXXXXXXXXDKNK---VKFTTPLIDYLKEKR 610
            K+VIRRLP +L +E L+E L  +PE++YF F + DTS     Y+RAYI+FKN +D+  FR++FDG++F D +G+E+ A+VEFAP Q    K+ +K+D K GT++ DPE+ +FLES   + EK+ S    + E   A    KN+    K TTPL+ +LK K+
Sbjct:   52 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPETLLEEIEA----KNRELIAKKTTPLLSFLKNKQ 208
The following BLAST results are available for this feature:
BLAST of TCONS_00068636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REN3B7.031e-2845.34Regulator of nonsense transcripts 3B OS=Homo sapie... [more]
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