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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068690 ID=TCONS_00068690|Name=TCONS_00068690|organism=Clytia hemisphaerica|type=transcript|length=1005bp
AATTATGAGAAAATAGGGATATGTCTAATAATATACTTTCAAAGTTCGAG
ATGCtcaaaatgatataaaaagGCCATCTTaaatgaaaaacaccattcAC
TTTTCACAAGCATCTCAAAGCTTAAAACAAGTGAACAAATAAAGCAAACA
ACTTTCCTGTGCAATCAAACAATCATGGGCAAAACAACTCTGGCTTTCTT
GGCTCTCGCCATCTTTGCTGCAACTTGCGTCGACGCTGGTTGCCGACACC
CTACTTTCCCTGAGGAATTTTTGTGGAGCTTCAAAGGACGTATCCCCAAG
ATGAACTGCGTCAAGGTGATTGAACCATCTGATCCTAAATGGAAGAATGG
GGACAACTTCTTGTGTCATGTTAGAGAGCATGGACGAATCTGTAACACCG
GGATCCGCTGGTCATACCGTGGTGCGATCAAGAACATGAGATGCAGCCGT
GTCAACGAACCATCAGAACCCAAAGGATACCACTGGGGAGATAACTTTCT
GTGTGTTCCCAAGAACTCTCCATACCATTTCAAATTCTACAACTACAGAC
CCAAGATGACCAGAAACTGCGTTCAAATGACCGAGCCATCTGACCCAAAT
ACATGGAAAGATAATTTCCTTTGCCTCAAAGATCTCTAAAcgaaaatttt
taagaattaaTTTCATCTGATATGATTGTCTTTCAAAGGGTCATcaagtt
tgtaaattttctgAGCAGAGGAAAACTTGGATGGTTTGTTTTACTGCTTT
CCTTGTAGTAATAAGTTAGGACTTTAATTAAGAACGCAACTATAGTTTGA
AAGAATTTGACAATTTGTATCTATCATGGCTGTTTTCGAAAGTTTAgaca
aaaagattttgattttcaaagaagGCAGCCCAACGAGATGATCGTTTTTA
AGACAATCATTGAATTTTGAGTTATAATTTATCGGAAATTGTAAGATTTT
TAgagataaaattgaaataaaatatttagtCAAAGAAAGACTAATTATAC
CTCCT Run BLAST on NCBI protein sequence of TCONS_00068690-protein >TCONS_00068690-protein ID=TCONS_00068690-protein|Name=TCONS_00068690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MGKTTLAFLALAIFAATCVDAGCRHPTFPEEFLWSFKGRIPKMNCVKVIE
PSDPKWKNGDNFLCHVREHGRICNTGIRWSYRGAIKNMRCSRVNEPSEPK
GYHWGDNFLCVPKNSPYHFKFYNYRPKMTRNCVQMTEPSDPNTWKDNFLC
LKDL Run BLAST on NCBI transcript from alignment at scaffold_487:45173..48487+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068690 ID=TCONS_00068690|Name=TCONS_00068690|organism=Clytia hemisphaerica|type=transcript|length=3315bp|location=Sequence derived from alignment at scaffold_487:45173..48487+ (Clytia hemisphaerica)
AATTATGAGAAAATAGGGATATGTCTAATAATATACTTTCAAAGTTCGAG
ATGCtcaaaatgatataaaaagGCCATCTTaaatgaaaaacaccattcAC
TTTTCACAAGCATCTCAAAGCTTAAAACAAGTGAACAAATAAAGCAAACA
ACTTTCCTGTGCAATCAAACAATCATGGGCAAAACAACTCTGGCTTTCTT
GGCTCTCGCCATCTTTGCTGCAACTTGCGTCGACGCTGGTTGCCGACACC
CTACTTTCCCTGAGGAATTTTTGTGGAGCTTCAAAGGACGTATCCCCAAG
ATGAACTGCGTCAAGGTGATTGAACCATCTGATCCTAAATGGAAGAATGG
GGACAACTTCTTGTGTCATGTTAGAGAGCATGGACGAATCTGTAACACCG
GGATCCGCTGGTCATACCGTGGTATgtaaacccagctggcacacaacgtt
gtttcaacgttcatctaacgttatggggacgttgtgaacattaaataaac
gttgaaagaacgttgtgtgccagctgcgCATGTTTATGAATTGTTTTTGT
ACTGTTTTTACTCAATATTTTTCTGTCTAACTATTTCATTGAGAAAATAG
GTGCACGAAGATCGTTTTAAAATGTGATAAATACTAATCCGAATCGGGTT
CATGTTAGTTAGTCCAAAATGAACAGAAAATGTCCTACTGtaaaatttgg
caaagatttcgtccccggtgggaaaataccatggaatttcagccccactg
agaatttgactttattttcatccccattcgagttccaatgtttgaaaatt
gcactccaaaaccatcccacttgattttttaaccttggaataatctatcc
ccattgagatttcaataggaatttttatccccactgaggaaaaactTCAC
tgaggctgtgagacagggggcgctgttttttaattgaaaattctGTCGGA
TGCACAATCGATACTTCTGACAGAGTTGAATAAAAATTAGTTATGAGTTA
GGTTCAAAGCTTATTATTATAAATAAGGACTAATGGGTTCTTTTTAATAG
CGAACTTTCCAAGAATCAAACTCTTTACAGCTTTTTTCAGTAAAGTCAAA
TTCAAGTCTGTCGGACGCACGCGATAGAAAATggacttcaaaatttttga
gggCAAATCCTAATTCTATCGAAAGTACTAGGCCTACAAACTTGAACTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtc
aaaaaaatcactttttggcAGGTACACTGTAGTCACCGACTCACAGAGGC
GATTTGCATGATCGGCGAAGTCTCGTGGCGAGTTGACAACAATTCCTAAC
GATTTGACCTCTCgaaagactttattttttatCGTTCCACCAACTCCATC
CATAGGGCCTTTGCCATGAGAGGCCTCGTTGTAGTGCCACTCTATCAGCT
TATCAGGATGCAGTTTAGGTAGCAGTGCGAATTTGAACCGCGAGCAAAAT
CGCGACGAACACCCATCACTCCACAAATACACCTTCTTCAAAGTGTATCG
AAGTGGCAGCCGTTCCTCGACACAATCGATGACCTTTGAAACGCAAGTGA
ATGATGCAATGCGTGAGTGATCGTTTGTTTCACTGACAATTGTCAGTGGA
ACCTTCTCGAGGTCAGAAGAATCGTTGTTAAGTTaagttttgagtgtatt
ttgtTGTTAATTAACTTATCTGTCGGAcgcacaaatatcttttttcagat
tcgcaaaaaaaaaagtcattttcctGAAGATAATAGTTTAATAATATAAT
TAATAATAGAAAGTACCTAAAGCCTTAAACAAATTCGGGGATCCAAATAT
TggttaaatttaattttcctcTTGTTTTAATTATATTGAACTTATCTGTC
GGACGCACAGCTAAAATGGATAGAGCTAGTACTTCCATCTCGGAAGCAAG
AGCTTCATAATTTTATCGGTTTACGATAAGACTCCCTAAAAGTTGATAGT
TTACAGGCTATCGTCAATAGTCTATacattgtttttctaaaaaaaaaaaa
atgctatCATAAATCTGTCGGACGCACAAAATAAAGTTTATGAAGTTGTC
AAAGTAGCTATTGAGATCTAAATAAGCTTATTTTGCTATTTTATCAAAAC
CTCATATGAAGTTTGCATAGTTTCTGCAATTGAAACGACTTTTTAACCAT
GCGAGGGGGGCATTATTGCATAAAATGTTTGTGCGTCCAACAGACAGATT
TTCAATGATCTCCTCGTTCAAATCGTTGATAAGaatactgaaaaataaaa
attttaagcaaTCTTTGTAGACACCAAACAAATTCGGTGTTAAGGAACGA
CTTTAGCTCGGAAATTGCTGCATtatcttgattttaaaaattgacgTTGA
TGGTTACCAATTAAAAAACAGCACCAGGGGTGTTTATTGGCTTTTATTGA
CCATTTATGAACTCTTTATTCCCATCCTTAGGTGCGATCAAGAACATGAG
ATGCAGCCGTGTCAACGAACCATCAGAACCCAAAGGATACCACTGGGGAG
ATAACTTTCTGTGTGTTCCCAAGAACTCTCCATACCATTTCAAATTCTAC
AACTACAGACCCAAGATGACCAGAAACTGCGTTCAAATGACCGAGCCATC
TGACCCAAATACATGGAAAGATAATTTCCTTTGCCTCAAAGATCTCTAAA
cgaaaatttttaagaattaaTTTCATCTGATATGATTGTCTTTCAAAGGG
TCATcaagtttgtaaattttctgAGCAGAGGAAAACTTGGATGGTTTGTT
TTACTGCTTTCCTTGTAGTAATAAGTTAGGACTTTAATTAAGAACGCAAC
TATAGTTTGAAAGAATTTGACAATTTGTATCTATCATGGCTGTTTTCGAA
AGTTTAgacaaaaagattttgattttcaaagaagGCAGCCCAACGAGATG
ATCGTTTTTAAGACAATCATTGAATTTTGAGTTATAATTTATCGGAAATT
GTAAGATTTTTAgagataaaattgaaataaaatatttagtCAAAGAAAGA
CTAATTATACCTCCT Coding sequence (CDS) from alignment at scaffold_487:45173..48487+ >TCONS_00068690 ID=TCONS_00068690|Name=TCONS_00068690|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_487:45173..48487+ (Clytia hemisphaerica)
ATGGGCAAAACAACTCTGGCTTTCTTGGCTCTCGCCATCTTTGCTGCAAC
TTGCGTCGACGCTGGTTGCCGACACCCTACTTTCCCTGAGGAATTTTTGT
GGAGCTTCAAAGGACGTATCCCCAAGATGAACTGCGTCAAGGTGATTGAA
CCATCTGATCCTAAATGGAAGAATGGGGACAACTTCTTGTGTCATGTTAG
AGAGCATGGACGAATCTGTAACACCGGGATCCGCTGGTCATACCGTGGTG
CGATCAAGAACATGAGATGCAGCCGTGTCAACGAACCATCAGAACCCAAA
GGATACCACTGGGGAGATAACTTTCTGTGTGTTCCCAAGAACTCTCCATA
CCATTTCAAATTCTACAACTACAGACCCAAGATGACCAGAAACTGCGTTC
AAATGACCGAGCCATCTGACCCAAATACATGGAAAGATAATTTCCTTTGC
CTCAAAGATCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068690-exon-scaffold_487-1491911889:45173..45593 | TCONS_00068690-exon-scaffold_487-1491911889:45173..45593 | Clytia hemisphaerica | exon |
| TCONS_00068690-exon-scaffold_487-1510915933:45173..45593 | TCONS_00068690-exon-scaffold_487-1510915933:45173..45593 | Clytia hemisphaerica | exon |
| TCONS_00068690-exon-scaffold_487-1575043694:45173..45593 | TCONS_00068690-exon-scaffold_487-1575043694:45173..45593 | Clytia hemisphaerica | exon |
| TCONS_00068690-exon-scaffold_487-1491911889:47904..48487 | TCONS_00068690-exon-scaffold_487-1491911889:47904..48487 | Clytia hemisphaerica | exon |
| TCONS_00068690-exon-scaffold_487-1510915933:47904..48487 | TCONS_00068690-exon-scaffold_487-1510915933:47904..48487 | Clytia hemisphaerica | exon |
| TCONS_00068690-exon-scaffold_487-1575043694:47904..48487 | TCONS_00068690-exon-scaffold_487-1575043694:47904..48487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:45173..48487 + |
Blast
The following BLAST results are available for this feature:
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