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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068766 ID=TCONS_00068766|Name=TCONS_00068766|organism=Clytia hemisphaerica|type=transcript|length=5801bpRun BLAST on NCBI protein sequence of TCONS_00068766-protein >TCONS_00068766-protein ID=TCONS_00068766-protein|Name=TCONS_00068766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1787bp SLGYNDYSLYIEERLGFILHTFIKQGNSIEHFPVKCLGFNMNEFLRKMFVRun BLAST on NCBI transcript from alignment at scaffold_49:216884..237868+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068766 ID=TCONS_00068766|Name=TCONS_00068766|organism=Clytia hemisphaerica|type=transcript|length=20985bp|location=Sequence derived from alignment at scaffold_49:216884..237868+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:216884..237868+ >TCONS_00068766 ID=TCONS_00068766|Name=TCONS_00068766|organism=Clytia hemisphaerica|type=CDS|length=5364bp|location=Sequence derived from alignment at scaffold_49:216884..237868+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068766 vs. Swiss-Prot (Human)
Match: ATM (Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=4) HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0 Identity = 591/1928 (30.65%), Postives = 970/1928 (50.31%), Query Frame = 3
Query: 3 SLGYNDYSLYIEERLGFILHTFIKQGNS---IEHFPVKCLGF-NMNEFLR---KMFVPHVMPWLVVHNKFEEITQIQNTYFPNVDLVSFFQNAFQRIASLLLPTYFKNQTTESLNEMEQIHLEALSEYREHVTPEY----------------FNKALQEQCKFILLRFFSHCNGAKECS----HFERSSPIAVNYPLHRANDIESFVFNLAKCYGEKRKSII-VFTRSTDTIPFMQASLAEHFFCACVNSL--RVTTFMCYHHFVMYMLGDYEEFEKVIGNFIIRVILHNTIYAARLAAKHPQELSCVLDLSFEILEKVFSMV-PLFSSVC------CEFASSLSFIVVNLTNFCLNKDVVWLVNKSIAFLEEIVCSQTDNMNLYDFINSLVLLSSFPGQDIFEKLNNHLKTLKDSQGMTSFNEELDQHLHILEQINVSTDNLAICLQNVKRFL---------VQNTARKEPSESL--NKLVHFLHQNIQSFTSDSQKLAFE----CLGLIGPQ--GSIKHQVERNNDLTNVVE-----------NILCQICKLCVSERCTTSKAAVICLSKLFEKNVFKERYEKMLSSGSTILKYLNPFVHNKKSKRIKGQSSQSQTLHQGAGVLDLELKPEVSYERWVQDLCVYLLNKKGCQ-DSYKDXXXXXXXXXXXXXTCLPYIVHLLIEVDSN------FQTELTYAIAESLALLSDTGQI---------KENLKKMC-------QLIKIIDYLRMKAIERHLEQEIDKRSIPWQANLPRIDYSKLSKMAIDCGMHYTAAVFVELSLDPIMKNPPXXXXXXXXXXXXXXXXXXXXLGDIDTMGSQTSQQCGSYGKPTQRLLYEIYERIGEADLLTGLAHSSIADPSVKLKTQKLRGNHAKALLLSDIGWNAGKSS--AKLLENLMDCGLHNVALMFVQGVDQDIHHNQKYL----ELQYEAAWRNSVWNNKSRDMLSSE-SGLHGNIYKTLCSWKNND----SHSLAY----NMEEARKNILQSCV--------LNEVGPSEMIKQSFVLNQLENTCNNLLRGDLDEIKILKSTENSFESFEMGCSVSLEAIMLCKEIKQSTPKTKEVLDLVVRYGKGLCRLARESKKFEVCERLISKLVKLEGEVNLCNDWKLEQVKLAWAEGERMHAIQLLKKFIK--DSKNA--DGCEKTLYPVALSLYGHYAGETKSESPVYIMENYLEPAIGLMEQENYSGNHS------PIDAYHTLAKYADNQYESIGQYLKSDMYEHKQSVVRKNKEEIDRLRSGK-QNHDQTVERQIRNLEKQYTEDNLELKQTTIDRNTFLLKAVQNYCKCLEQGDKHNLNVIRLVSLWFEKFSDEDLNGLLKQSLKRIESRKFLPIIYQVAARLGTAMTTQSASFKENIEQVIFQCVSEHPHHSAYVLMALKHADMDNKMT----VRNSRTK---PPTLKPQDKTRLDAACSVVERLRKRHTKYIQDIEHLSQVYIEMAYWDIKHLKTETGPFDIPESRRLRQIHNLTSVMVPTVETKVDASLQYKNIIHIRKFDDKFTHCGGVNLPKVVTCVCSDGQRRRQLIKGKDDMRQDAVMQQVFSVANMLLQQDSESRKKNFHMRTYKVVPLSRKSGVMEWCEGTMPLGDYLIGGRSKKLGAHQRYYPSDWKPSECRQRLHKSSKK-----IKAFLEIEKNFHPVLRYFFLEKFKRAENWFHKRLNYTRSTAVASIVGYILGLGDRHCQNILIDYKTADIVHIDLGVAFEQGKLLPTPETIPFRLTRDLXXXXXXXXXXXXFRQACEKTMEVMRRSKESISTIVEVLLYDPLSAWTISSEKVNRLQNKANNTTANQSILDM-------TIADTEDIFEGEKNKMANRALLRLNQKLSGVEGGSFLSIQGQINYLILEAKDKNNLCKLYPGWQPWM 5363
+ GY ++ L +++ ++ ++ + FP L + N+ +F R K+ +PH LV+ + F+E+ I N D S + F +I +LP + T +S +++ RE T Y F L E +L+ N + S F A N P ++ I++ ++ C+ K KSI+ + ++S D+ + ++ E A N++ + YH FV +L D + F++R +++ I+ Q SC++D+S + FS+ L S VC C+ A V+ T L + V + + + L+ +V DN NLY I LL FP +F+ L + +K S+G S EE++ L + + L L++++R L + ++ P + + +V+ L + + +K E CLG +GP +I Q ++ T ++ +L + V + AAV CL + +E + +L YL PF ++K K ++ + +G ++L + +++ W++ L L+ G + + + L P+C +F +T LPY++H ++ D+N T + L S T + E+ + C ++ ++DY+R ++ +I A ++Y +++K+A C H+TA ++ E+ D + S + S ++ T+ S + + G Q LL EIY IGE D L G + P +L+T + KAL+ D+ S+ A +++ L + GL ++ ++++G+D + N+ + EL Y+AAWRN W++ + E + H ++Y L S ++ + SL Y +EE K L+S L +G E I + F + + + ++LK ++ SF+ M + I++ KE+ S + + D++ ++ L LAR K ++ ER I ++ + ++W+LE+ ++ WA+ E+ A+ +LK+ IK D+ A + K Y L + G++ ET E+P IM+ YLE A+ + NY G S + A+ +LA+++D QY+ I Y+KS +E+KQ+++++ KEE+ LR K Q + TV+ Q R LE D L L+ DR FL KAV+NY CL G++H++ V RL SLW E ++NG++K+ +I + KFLP++YQ+AAR+GT M F E + +I + +HPHH+ ++++AL +A+ D +T R SR P D+ R +AA ++ +R R + ++ +E L YI +A D KT+ +IP + + ++ NL V+VPT+E KVD + +Y N++ I+ F +F GGVNLPK++ CV SDG+ RRQL+KG+DD+RQDAVMQQVF + N LLQ+++E+RK+ + TYKVVPLS++SGV+EWC GT+P+G++L+ GAH+RY P+D+ +C++++ + KK + F+++ +NF PV RYF +EKF WF KRL YTRS A +SIVGYILGLGDRH QNILI+ ++A++VHIDLGVAFEQGK+LPTPET+PFRLTRD+VDGMG+ GVEGVFR+ CEKTMEVMR S+E++ TIVEVLLYDPL WT++ K LQ + + T L+ ++D + F NK+A R L+RL +KL GVE G+ LS+ GQ+N LI +A D NL +L+PGW+ W+
Sbjct: 1200 TFGYRRLEDFMASHLDYLVLEWLNLQDTEYNLSSFPFILLNYTNIEDFYRSCYKVLIPH----LVIRSHFDEVKSIANQI--QEDWKSLLTDCFPKILVNILPYFAYEGTRDS----------GMAQQRETATKVYDMLKSENLLGKQIDHLFISNLPEIVVELLMTLHEPANSSASQSTDLCDFSGDLDPAPNPPHFPSHVIKATFAYISNCHKTKLKSILEILSKSPDSYQKILLAICEQ--AAETNNVYKKHRILKIYHLFVSLLLKDIKSGLGGAWAFVLRDVIYTLIHYIN------QRPSCIMDVSL----RSFSLCCDLLSQVCQTAVTYCKDALENHLHVIVGTLIPLVYEQVEVQKQVLDLLKYLVIDNKDNENLYITIK---LLDPFPDHVVFKDLRITQQKIKYSRGPFSLLEEINHFLSVSVYDALPLTRLE-GLKDLRRQLELHKDQMVDIMRASQDNPQDGIMVKLVVNLLQLSKMAINHTGEKEVLEAVGSCLGEVGPIDFSTIAIQHSKDASYTKALKLFEDKELQWTFIMLTYLNNTLVEDCVKVRSAAVTCLKNILATKTGHSFWEIYKMTTDPMLAYLQPFRTSRK-KFLEVPRFDKENPFEGLDDINLWIPLSENHDIWIKTLTCAFLDSGGTKCEILQLLKPMCEVKTDFCQTVLPYLIHDILLQDTNESWRNLLSTHVQGFFTSCLRHFSQTSRSTTPANLDSESEHFFRCCLDKKSQRTMLAVVDYMRR-------QKRPSSGTIFNDAFWLDLNYLEVAKVAQSCAAHFTALLYAEIYADKKSMDDQEKRSLAFEEGSQST-----------TISSLSEKSKEETGISLQDLLLEIYRSIGEPDSLYGCGGGKMLQPITRLRTYEHEAMWGKALVTYDLETAIPSSTRQAGIIQALQNLGLCHILSVYLKGLD---YENKDWCPELEELHYQAAWRNMQWDHCTSVSKEVEGTSYHESLYNALQSLRDREFSTFYESLKYARVKEVEEMCKRSLESVYSLYPTLSRLQAIGELESIGELFSRSVTHRQLSEVYIKWQKHSQLLKDSDFSFQEPIMALRTVILEILMEKEMDNSQREC--IKDILTKHLVELSILARTFKNTQLPERAIFQIKQYNSVSCGVSEWQLEEAQVFWAKKEQSLALSILKQMIKKLDASCAANNPSLKLTYTECLRVCGNWLAETCLENPAVIMQTYLEKAVEVAG--NYDGESSDELRNGKMKAFLSLARFSDTQYQRIENYMKSSEFENKQALLKRAKEEVGLLREHKIQTNRYTVKVQ-RELEL----DELALRALKEDRKRFLCKAVENYINCLLSGEEHDMWVFRLCSLWLENSGVSEVNGMMKRDGMKIPTYKFLPLMYQLAARMGTKMMG-GLGFHEVLNNLISRISMDHPHHTLFIILALANANRDEFLTKPEVARRSRITKNVPKQSSQLDEDRTEAANRIICTIRSRRPQMVRSVEALCDAYIILANLDATQWKTQRKGINIPADQPITKLKNLEDVVVPTMEIKVDHTGEYGNLVTIQSFKAEFRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFLVNNED---GAHKRYRPNDFSAFQCQKKMMEVQKKSFEEKYEVFMDVCQNFQPVFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALYLQQRPEDETELHPTLNADDQECKRNLSDIDQSF----NKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV 3056 The following BLAST results are available for this feature:
BLAST of TCONS_00068766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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