TCONS_00068776 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068776
Unique Name	TCONS_00068776
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2407

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_49:307246..311458+
coding sequence from alignment at scaffold_49:307246..311458+

transcript sequence

>TCONS_00068776 ID=TCONS_00068776|Name=TCONS_00068776|organism=Clytia hemisphaerica|type=transcript|length=2407bp
CCTCTTACATGTCCTTGCCCGAAATAGAATCGATTGTTCATTAAGAAGTG
ATCAAAGTGCAGAAATCAAAAATAGGTGGGATGCGTTCAAAGTAGCAAGT
TCACAACATTTtgtacattgaaaaaaaaaaatggactCTCGGCCTGTGTT
GAAGCGGAAAGACTTGAGGGTTGATCAGCAGATCTTGTCTATTATTAATT
TGGTCATCTTTTTGTCATATGGCCTGCTCAAGTGttccaatatctttcca
acattAAAAgcaTCGAAAGAATTACCGGACGAAGATCAAAAACCGGTCGC
CAAACCGAAAGAGAAATCTCCAAAAGCCgaaaagaaaaaggagaaaaaac
aaaagaaaaagaagaagaaaaagaagggcAAAGGAGGAGAGTTGGGAAAG
ATCGATGAAGATGTGGGGGAGAGTGACGTCATCACTGACCCTCCTTCGTC
ATCGTTCGTCGATGAATCTTCAGAATCAAAAATCGAAAGTTCAACGAAAG
AGGAATATGGGGCAGATCAATTGGACGAGGAAAACAACGTCACGTTGGAA
AAATTATCGACACTTGTCGGAAATGGTGACGTCATTGCTTCTGGTGGGGA
GGAGGACGTTCAAGAAATTCACGTCGAATTCACGGATGACGAACTCGCTG
ATTCTGAAGGCAGCCAATCAGAAGACGAAAAACAACCACGTGACCGGCTG
AATACCCAATTAGAAAAAAGTCGGGAGAGTGTGTTGGATAGTCTGGATGG
TTTCACCAGGAACGATAGTACTGGTAGTCAGTTGAGTGGATTTTCGGTCA
TGCAAACAGGCCCTGTGTACGAAAACGTTACTCAAGTAGTCCCTGAAGAA
TTGAACATCCAATATGCGGACGATATATTTCGAAATTGTGCTGCTCGCTA
TCAAATCTTTGTGGATAAAACACATGATTTCAAATCGACTGTAGATGCCT
TCACAAACATGGTACCTTTACTGAAAGAAAACGCAGAATTGAAAGATTAT
TTCGAAGCTTATGGAAAGTTATTGGAGCAAGAAAGTGAAAAAGATAATCA
AGTTGAGATGTCAGACGTGAACGTTTCGTTGCAAACTCTTCGCGCCAATG
GAAACCAGCTCTTAGATATCATCGATAATGTTCGGCCGCACGTAGATCGC
TTGATCGATGACGCGTCCAACGTTGACGTCATCGAATACGTCAAAGGCAA
GATGGTAGAAGGTGTACAGTTGGGCATCACATCAAAGTTTTCGGCACCGG
GTAAATATCGTCGTAACATGAAGCATTTGCGAAAAGCTTTGTCCAACATT
GATGCAGTTCAGGAAGAagtaaaagctattttagaagatgatgtttttct
cgatCGAAATGAGTGTTCAGACAGTGATGAAGAAAGCGGGCCAACCACGC
CGCCACAACCACCATCAGATAATGAATCCGATATCGTTCCCATGGTTCAA
CAGGAAGACATCCCAACAAACGATATCTTCCACAAACTTGACAACATGTC
TGTGGAAGAATCTATTGAGTTGAGTGGAGAAACGAAGCCGGTGGATGGCA
GTCAATCACCATCTTATGAACgtaaattgatgacgtcagacAACAAAAAG
GCAAACATGACCCTGCTGGAACAATCTATCGAAGCTGAACGTCAAACTTC
ACTAGAACCGCAAACTATGACGTTCGTTATCGAAAACATTCCGGAAAACG
GTAAAAGTCCGGTCAACACCAGTACTCCGACCGATAAAAATGCAATCCAA
CAGATAATTGTGGAAGAAGAGGAGCACAATACTTTGGACTTTGGTAAATA
CATATTGGTTGACCCGAACACAGGAGATATTGCCGTGATGAGGAATCGTT
CACGGAGTTTAGACAGCCTCGTTTCAATACAATCTAATCGATCAAGTATC
TCCAAGTTTGGCAGTTTTGAATTCGTCACAGACTATGAATTGACAATCGC
CGAGAAAAATCAACAattgaaaagttgatttttgagGAGGTATAGTTTTT
AAATGGAATCAGTATGGAATTTTGTATGTGAAACATATGCGATGTTTTTC
GATAGTGGTGGTGGTGAGTGATTCCACAATGAGAATTGGTGTCTAAATGA
AACTTCAAATCTTCTTCAATATAAAACTTGTTGAATGGAATGGGGGAAAG
GGGCCGTCATATTTTAGAACTCTAGTTCTTTATTTATCTTTGTATTAAAT
TTATTCTTTATATTTTCATCTCAAAAGCATTTTTCATGCACCGTTCAAAT
GTTCACCATACTCACTCACTTTTCAACGTGAATTCACAACACAAAACATT
CCTCGAGGATTAaggtcggtctccacttgcgcgcgctgcaatcgcacttt
ttggcttcaatcctttttgcttggaaaaaagattacgtcataaaaatgta
gcgcgcg

Run BLAST on NCBI

protein sequence of TCONS_00068776-protein

>TCONS_00068776-protein ID=TCONS_00068776-protein|Name=TCONS_00068776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=615bp
MDSRPVLKRKDLRVDQQILSIINLVIFLSYGLLKCSNIFPTLKASKELPD
EDQKPVAKPKEKSPKAEKKKEKKQKKKKKKKKGKGGELGKIDEDVGESDV
ITDPPSSSFVDESSESKIESSTKEEYGADQLDEENNVTLEKLSTLVGNGD
VIASGGEEDVQEIHVEFTDDELADSEGSQSEDEKQPRDRLNTQLEKSRES
VLDSLDGFTRNDSTGSQLSGFSVMQTGPVYENVTQVVPEELNIQYADDIF
RNCAARYQIFVDKTHDFKSTVDAFTNMVPLLKENAELKDYFEAYGKLLEQ
ESEKDNQVEMSDVNVSLQTLRANGNQLLDIIDNVRPHVDRLIDDASNVDV
IEYVKGKMVEGVQLGITSKFSAPGKYRRNMKHLRKALSNIDAVQEEVKAI
LEDDVFLDRNECSDSDEESGPTTPPQPPSDNESDIVPMVQQEDIPTNDIF
HKLDNMSVEESIELSGETKPVDGSQSPSYERKLMTSDNKKANMTLLEQSI
EAERQTSLEPQTMTFVIENIPENGKSPVNTSTPTDKNAIQQIIVEEEEHN
TLDFGKYILVDPNTGDIAVMRNRSRSLDSLVSIQSNRSSISKFGSFEFVT
DYELTIAEKNQQLKS

Run BLAST on NCBI

transcript from alignment at scaffold_49:307246..311458+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068776 ID=TCONS_00068776|Name=TCONS_00068776|organism=Clytia hemisphaerica|type=transcript|length=4213bp|location=Sequence derived from alignment at scaffold_49:307246..311458+ (Clytia hemisphaerica)
CCTCTTACATGTCCTTGCCCGAAATAGAATCGATTGTTCATTAAGAAGTG
ATCAAAGTGCAGAAATCAAAAATAGGTGGGATGCGTTCAAAGTAGCAAGT
TCACAACATTTtgtacattgaaaaaaaaaaatggactCTCGGCCTGTGTT
GAAGCGGAAAGACTTGAGGGTTGATCAGCAGATCTTGTCTATTATTAATT
TGGTCATCTTTTTGTCATATGGCCTGCTCAAGTGttccaatatctttcca
acattAAAAGTAAGATAAAAACTCTACACTTAAGTCTTGTCCGGGCATTG
TCCAGAGAAAATAAATATTcatattatattttcaattagaAATCCAACTT
TGGTTATTTTATTAAGTTTGTTANTATTcatattatattttcaattagaA
ATCCAACTTTGGTTATTTAattaagtttgtttttattttaggcaTCGAAA
GAATTACCGGACGAAGATCAAAAACCGGTCGCCAAACCGAAAGAGAAATC
TCCAAAAGCCgaaaagaaaaaggagaaaaaacaaaagaaaaagaagaaga
aaaagaagggcAAAGGAGGAGAGTTGGGAAAGATCGATGAAGATGTGGGG
GAGAGTGACGTCATCACTGACCCTCCTTCGTCATCGTTCGTCGATGAATC
TTCAGAATCAAAAATCGAAAGTTCAACGAAAGAGGTGcgctatgtttttg
ttttgttttacgCACTATCTATCTTTAAATGCATGCTTGTATAACGTACA
TTATTTAACGCACTCGTCTTTTCATTTCGAGGTCTCGCCTTTCCCAAACA
AAAGCTTTGGAATTCTCCAGAAAAAACTTATTTTGCCATTAATTCGATGA
GGACCGTTTGAAATTGTTATGATTTTACTTAATTCCCTATAACTTAAAAT
CTCCTCCATTTTCATAATCTTTAATTTACTTAAACAAGTTAAATTTGTAT
CCTTACTTCTCCTTACTTATAAAAGGATACTTTAAAATGTCTATTAAAAC
AAACGATCTCTACACTCATCAAAAGTTTGCACATAAATTGTTAACAATTA
AACTAACTTCACTCACCTTGCACTCACTAACCACTAACCTCATGAAGGAA
TTTTATGGAATGAAATACTTATGCCTAATTATTGGCATTGTTTAGGAATA
TGGGGCAGATCAATTGGACGAGGAAAACAACGTCACGTTGGAAAAATTAT
CGACACTTGTCGGAAATGGTGACGTCATTGCTTCTGGTGGGGAGGAGGAC
GTTCAAGAAATTCACGTCGAATTCACGGATGACGAACTCGCTGATTCTGA
AGGCAGCCAATCAGAAGACGAAAAACAACCACGTGACCGGCTGAATACCC
AATTAGAAAAAAGTCGGGAGAGTGTGTTGGATAGTCTGGATGGTTTCACC
AGGAACGATAGTACTGGTAGTCAGTTGAGTGGATTTTCGGTCATGCAAAC
AGGCCCTGTGTACGAAAACGTTACTCAAGTAGTCCCTGAAGAATTGAACA
TCCAATATGCGGACGATATATTTCGAAATTGTGCTGCTCGCTATCAAATC
TTTGTGGATAAAACACATGATTTCAAATCGACTGTAGATGCCTTCACAAA
CATGGTACCTTTACTGAAAGAAAACGCAGAATTGAAAGATTATTTCGAAG
CTTATGGAAAGTTATTGGAGCAAGAAAGTGAAAAAGATAATCAAGGTCAG
ATTCACCAAAAAGCTCTCTTTCGTAACTAGAAGTTGATAAATGTCTTTTT
AGATGAATTATCATCCATTGTTGTCAAGCTCCTCAAAAATTAGTTTAGAG
GCTAGTAACAGTAGAAACTTTAGTGAATATTGAGGTTAGTAatatgttga
tattttttgtattGCTTTAGTTGAGATGTCAGACGTGAACGTTTCGTTGC
AAACTCTTCGCGCCAATGGAAACCAGCTCTTAGATATCATCGATAATGTT
CGGCCGCACGTAGATCGCTTGATCGATGACGCGTCCAACGTTGACGTCAT
CGAATACGTCAAAGGCAAGATGGTAGAAGGTGTACAGTTGGGCATCACAT
CAAAGTTTTCGGCACCGGGTAAATATCGTCGTAACATGAAGCATTTGCGA
AAAGCTTTGTCCAACATTGATGCAGTTCAGGAAGAagtaaaagctatttt
agaagatgatgtttttctcgatCGAAATGAGTGTTCAGACAGTGATGAAG
AAAGCGGGCCAACCACGCCGCCACAACCACCATCAGATAATGAATCCGAT
ATCGTTCCCATGGTTCAACAGGAAGACATCCCAACAAACGATATCTTCCA
CAAACTTGACAACATGTCTGTGGAAGAATCTATTGAGTTGAGTGGAGAAA
CGAAGGTAATCATCCTTCCTTCGTCTCTTCTCTTAATCTTAAAAATTGAT
CAGgagttaaggccggtctccacttgcgcgcgctgcgatcgcattTTTTG
GCTTCAGTGCTTTTTGCTTggataaaagattacgtcataaaaatatagtg
cgcgctcgaaaaaaaagttgaacacatttcaacttttttcaaccgttacg
tcagatcgcgccaatggagttgcttcatttttcttttgaccaatagcgtg
gaagcttcgcccgaaaaagtgcgatcgaagcgcgcgcaagtggagaccgg
cctttacccTCTTCAGCTTGAGCTCTTTCAATGGGTAATCCATTGATTTT
ATTATTCTAAATAAATGAGGGTTCATTAACATAATTCTTAATCCCTAATG
ACTACTAACAACTAATCCACCTACAATTCTGGAGGTCTCTAATAACAGTC
ACATTAAAATTCTCTTTAACACGCGTGAATTTTGCCTTTCtagtaatttt
tttcctgtaCTTGGTCggaatttcttaaaaattggcaaaattggCGCGCA
TAAATAATCATCCATAATCATGCACGCTACAATATGCACGTTTTAAGTCT
AAACAAGATTCTTTAAGATCTTGCATCTCAATATGACCACAGTTCAATCT
ATATAAAACTTTAACCACGTCATTTCACAATGTGCCCGAAAAAGCGAACA
AATCTTTATATAAGGTAAATCCCCAAAACTTGTTATCAAAACTGtgctta
aaataatttgaaagaagatTACGATTGTTGTTCGATCTAAAGATATTCAA
TccccaagatgattgaataagTTTTTGAGATTTGAATATTAAGtatacaa
gtcataaaatttggcatgaagtatgaggattttactttacatAAAATTTG
TCcgttttttgggacacactatGTATTTATAAACTTTAAAGCTTTTTACA
ATACCATTTTACTGAATTGAGTTATTATTTTTCTCCTTCGCAGCCGGTGG
ATGGCAGTCAATCACCATCTTATGAACgtaaattgatgacgtcagacAAC
AAAAAGGCAAACATGACCCTGCTGGAACAATCTATCGAAGCTGAACGTCA
AACTTCACTAGAACCGCAAACTATGACGTTCGTTATCGAAAACATTCCGG
AAAACGGTAAAAGTCCGGTCAACACCAGTACTCCGACCGATAAAAATGCA
ATCCAACAGATAATTGTGGAAGAAGAGGAGCACAATACTTTGGACTTTGG
TAAATACATATTGGTTGACCCGAACACAGGAGATATTGCCGTGATGAGGA
ATCGTTCACGGAGTTTAGACAGCCTCGTTTCAATACAATCTAATCGATCA
AGTATCTCCAAGTTTGGCAGTTTTGAATTCGTCACAGACTATGAATTGAC
AATCGCCGAGAAAAATCAACAattgaaaagttgatttttgagGAGGTATA
GTTTTTAAATGGAATCAGTATGGAATTTTGTATGTGAAACATATGCGATG
TTTTTCGATAGTGGTGGTGGTGAGTGATTCCACAATGAGAATTGGTGTCT
AAATGAAACTTCAAATCTTCTTCAATATAAAACTTGTTGAATGGAATGGG
GGAAAGGGGCCGTCATATTTTAGAACTCTAGTTCTTTATTTATCTTTGTA
TTAAATTTATTCTTTATATTTTCATCTCAAAAGCATTTTTCATGCACCGT
TCAAATGTTCACCATACTCACTCACTTTTCAACGTGAATTCACAACACAA
AACATTCCTCGAGGATTAaggtcggtctccacttgcgcgcgctgcaatcg
cactttttggcttcaatcctttttgcttggaaaaaagattacgtcataaa
aatgtagcgcgcg

Coding sequence (CDS) from alignment at scaffold_49:307246..311458+

>TCONS_00068776 ID=TCONS_00068776|Name=TCONS_00068776|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_49:307246..311458+ (Clytia hemisphaerica)
atggactCTCGGCCTGTGTTGAAGCGGAAAGACTTGAGGGTTGATCAGCA
GATCTTGTCTATTATTAATTTGGTCATCTTTTTGTCATATGGCCTGCTCA
AGTGttccaatatctttccaacattAAAAgcaTCGAAAGAATTACCGGAC
GAAGATCAAAAACCGGTCGCCAAACCGAAAGAGAAATCTCCAAAAGCCga
aaagaaaaaggagaaaaaacaaaagaaaaagaagaagaaaaagaagggcA
AAGGAGGAGAGTTGGGAAAGATCGATGAAGATGTGGGGGAGAGTGACGTC
ATCACTGACCCTCCTTCGTCATCGTTCGTCGATGAATCTTCAGAATCAAA
AATCGAAAGTTCAACGAAAGAGGAATATGGGGCAGATCAATTGGACGAGG
AAAACAACGTCACGTTGGAAAAATTATCGACACTTGTCGGAAATGGTGAC
GTCATTGCTTCTGGTGGGGAGGAGGACGTTCAAGAAATTCACGTCGAATT
CACGGATGACGAACTCGCTGATTCTGAAGGCAGCCAATCAGAAGACGAAA
AACAACCACGTGACCGGCTGAATACCCAATTAGAAAAAAGTCGGGAGAGT
GTGTTGGATAGTCTGGATGGTTTCACCAGGAACGATAGTACTGGTAGTCA
GTTGAGTGGATTTTCGGTCATGCAAACAGGCCCTGTGTACGAAAACGTTA
CTCAAGTAGTCCCTGAAGAATTGAACATCCAATATGCGGACGATATATTT
CGAAATTGTGCTGCTCGCTATCAAATCTTTGTGGATAAAACACATGATTT
CAAATCGACTGTAGATGCCTTCACAAACATGGTACCTTTACTGAAAGAAA
ACGCAGAATTGAAAGATTATTTCGAAGCTTATGGAAAGTTATTGGAGCAA
GAAAGTGAAAAAGATAATCAAGTTGAGATGTCAGACGTGAACGTTTCGTT
GCAAACTCTTCGCGCCAATGGAAACCAGCTCTTAGATATCATCGATAATG
TTCGGCCGCACGTAGATCGCTTGATCGATGACGCGTCCAACGTTGACGTC
ATCGAATACGTCAAAGGCAAGATGGTAGAAGGTGTACAGTTGGGCATCAC
ATCAAAGTTTTCGGCACCGGGTAAATATCGTCGTAACATGAAGCATTTGC
GAAAAGCTTTGTCCAACATTGATGCAGTTCAGGAAGAagtaaaagctatt
ttagaagatgatgtttttctcgatCGAAATGAGTGTTCAGACAGTGATGA
AGAAAGCGGGCCAACCACGCCGCCACAACCACCATCAGATAATGAATCCG
ATATCGTTCCCATGGTTCAACAGGAAGACATCCCAACAAACGATATCTTC
CACAAACTTGACAACATGTCTGTGGAAGAATCTATTGAGTTGAGTGGAGA
AACGAAGCCGGTGGATGGCAGTCAATCACCATCTTATGAACgtaaattga
tgacgtcagacAACAAAAAGGCAAACATGACCCTGCTGGAACAATCTATC
GAAGCTGAACGTCAAACTTCACTAGAACCGCAAACTATGACGTTCGTTAT
CGAAAACATTCCGGAAAACGGTAAAAGTCCGGTCAACACCAGTACTCCGA
CCGATAAAAATGCAATCCAACAGATAATTGTGGAAGAAGAGGAGCACAAT
ACTTTGGACTTTGGTAAATACATATTGGTTGACCCGAACACAGGAGATAT
TGCCGTGATGAGGAATCGTTCACGGAGTTTAGACAGCCTCGTTTCAATAC
AATCTAATCGATCAAGTATCTCCAAGTTTGGCAGTTTTGAATTCGTCACA
GACTATGAATTGACAATCGCCGAGAAAAATCAACAattgaaaagttga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042887	XLOC_042887	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00068776-protein	TCONS_00068776-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:307246..311458 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.540904	1.82479	0.77316	1.65216	2.22332	3.26192	5.33804	4.59223	16.9283	20.7098	2.45516	35.734	19.2266	34.0976	81.0893	1.71175	3.26555	8.14882	20.2638	0	0	0	0	1.12997	0	0	0	0.412779	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00068776 vs. Swiss-Prot (Human)

BLAST of TCONS_00068776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00068776 (transcript) - C. hemisphaerica