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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068783 ID=TCONS_00068783|Name=TCONS_00068783|organism=Clytia hemisphaerica|type=transcript|length=985bp
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT
CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG
GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC
AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC
AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG
AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT
GGAAACAATAGTTTCAAATTATCACAAATGGTCGGAGAGCAAGGCAAAAT
TGTTGCTATTGATCCTATCAAAGATCGAATAACTGAAGCCAATTCTAGTT
ATAGCTCTCCAAATCTACATTTCTATGAGGGTTCAGCAAAGGATGTTACC
AAATTTGGAAGTgattttgatttggttgttgCAGCTACAGTCATACACTG
GATACCACCGCAAGAAAGACAAGAAGTGTTCCAAGGGATTATGCAAACTA
TGAAAGAAGGCGCTCAATTTATATTCAACATGACAAAGAAGGATACTTTC
AACATGATACCTATCTtggccaaaatcaaaacaaatcctTACAAGGGCGG
AAACTACTGGCCTGTACCAGAGATCAAAGATATAGAGCAATTAGCCAGCA
ATTCTGGTTATAGAGATGTCCAGGTTAAGGAACAAGAAATGGTGCAACGA
TTACCCTCTCTCGATCAATATCTGAGATGGGCTGCTTCTTCTTTTCACAC
ACGAGATTATGACCAAACATTGAAGGAGTTGAGAGATGTTTGTCAGAATG
AAGATGTATCATGCCTTTATGATAAAGATGGACATTTagtttataaacaa
aaatatttctttgccTATTGTAGAAAATGAATTTAATTCAGTCCTCGATA
CCTGGCATAttcaattcaaataaaaaatttatatt Run BLAST on NCBI protein sequence of TCONS_00068783-protein >TCONS_00068783-protein ID=TCONS_00068783-protein|Name=TCONS_00068783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MTEIKNKIFTGQATNGVKDYSELSKIVQETFFDYLVKDVKIENGWKVLDI
GCGTGNNSFKLSQMVGEQGKIVAIDPIKDRITEANSSYSSPNLHFYEGSA
KDVTKFGSDFDLVVAATVIHWIPPQERQEVFQGIMQTMKEGAQFIFNMTK
KDTFNMIPILAKIKTNPYKGGNYWPVPEIKDIEQLASNSGYRDVQVKEQE
MVQRLPSLDQYLRWAASSFHTRDYDQTLKELRDVCQNEDVSCLYDKDGHL
VYKQKYFFAYCRK Run BLAST on NCBI transcript from alignment at scaffold_49:398842..399892+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068783 ID=TCONS_00068783|Name=TCONS_00068783|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_49:398842..399892+ (Clytia hemisphaerica)
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT
CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG
GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC
AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC
AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG
AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT
NATTATTTGGTCAAAGACGTCAAGATTGAAAAAGGATGGAAGGTTTTAGA
TATCGGATGTGGCACTGGAAACAATAGTTTCAAATTATCACAAATGGTCG
GAGAGCAAGGCAAAATTGTTGCTATTGATCCTATCAAAGATCGAATAACT
GAAGCCAATTCTAGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTC
AGCAAAGGATGTTACCAAATTTGGAAGTgattttgatttggttgttgCAG
CTACAGTCATACACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAA
GGGATTATGCAAACTATGAAAGAAGGCGCTCAATTTATATTCAACATGAC
AAAGAAGGATACTTTCAACATGATACCTATCTtggccaaaatcaaaacaa
atcctTACAAGGGCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATA
GAGCAATTAGCCAGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACA
AGAAATGGTGCAACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTG
CTTCTTCTTTTCACACACGAGATTATGACCAAACATTGAAGGAGTTGAGA
GATGTTTGTCAGAATGAAGATGTATCATGCCTTTATGATAAAGATGGACA
TTTagtttataaacaaaaatatttctttgccTATTGTAGAAAATGAATTT
AATTCAGTCCTCGATACCTGGCATAttcaattcaaataaaaaatttatat
t Coding sequence (CDS) from alignment at scaffold_49:398842..399892+ >TCONS_00068783 ID=TCONS_00068783|Name=TCONS_00068783|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_49:398842..399892+ (Clytia hemisphaerica)
ATGACAGAAATCAAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGT
AAAAGATTACTCAGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATT
ATTTGGTCAAAGAcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATC
GGATGTGGCACTGGAAACAATAGTTTCAAATTATCACAAATGGTCGGAGA
GCAAGGCAAAATTGTTGCTATTGATCCTATCAAAGATCGAATAACTGAAG
CCAATTCTAGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTCAGCA
AAGGATGTTACCAAATTTGGAAGTgattttgatttggttgttgCAGCTAC
AGTCATACACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAAGGGA
TTATGCAAACTATGAAAGAAGGCGCTCAATTTATATTCAACATGACAAAG
AAGGATACTTTCAACATGATACCTATCTtggccaaaatcaaaacaaatcc
tTACAAGGGCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATAGAGC
AATTAGCCAGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACAAGAA
ATGGTGCAACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTGCTTC
TTCTTTTCACACACGAGATTATGACCAAACATTGAAGGAGTTGAGAGATG
TTTGTCAGAATGAAGATGTATCATGCCTTTATGATAAAGATGGACATTTa
gtttataaacaaaaatatttctttgccTATTGTAGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068783-exon-scaffold_49-1491911889:398842..399117 | TCONS_00068783-exon-scaffold_49-1491911889:398842..399117 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1510915933:398842..399117 | TCONS_00068783-exon-scaffold_49-1510915933:398842..399117 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1575043694:398842..399117 | TCONS_00068783-exon-scaffold_49-1575043694:398842..399117 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1491911889:399184..399892 | TCONS_00068783-exon-scaffold_49-1491911889:399184..399892 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1510915933:399184..399892 | TCONS_00068783-exon-scaffold_49-1510915933:399184..399892 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1575043694:399184..399892 | TCONS_00068783-exon-scaffold_49-1575043694:399184..399892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:398842..399892 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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