TCONS_00068813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068813
Unique NameTCONS_00068813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068813 ID=TCONS_00068813|Name=TCONS_00068813|organism=Clytia hemisphaerica|type=transcript|length=3107bp
aagtttttgaaattttgtgaagtaATTATTAAcaacaatttgaattttga
cataacgagaaaaataatttggaaTCTTACAAAGGTTTTCATAATGGTGT
ATAAAGCCTGGGACACGATTTCAAAAACGTTGTACGGCAAACGAGTTACC
GTGGTACGAAAACATAACCATCGTCAGAAGCGACGTACCAGTCAGAAAAG
ACGTATGTCACAAGCTATGGAACGTTCCTCTATGGCTGTCTTACAGGTGA
TGTCTTTAGGATCGGATATTTTACCCGAGTACCAAGTGGAATCTCCAAAA
ATCCACCCATGGACAATTCTCCATTACTCACCATTCAAAGCCATCTGGGA
TTGGGTGGTCTTATTTCTCGTCATGTATACCGCCATTATCACGCCCTACA
TGGCCGCCTTCGTATTAACCAGAGATTCCAACGAGGAAACATTCGCGATG
CATACATCTCATGCCGCTTCTGCAATCACCATAGCTGATGATCCATTGGT
CATCTTAGATTACATTGTTGATGTCATGTTTATTATTGATATTTTCATCA
ACTTTCGAACGACTTTTGTTGATGTACATGACGAGGTTGTCAGTGATCCT
TGTTTAGTTGCTATCCATTATATGAAGGGATGGTTTGTCGTTGACTTGTT
AGCTGCCATACCCTTTGAGTTACTCATCATGATTGGAAATACTGATCAGA
CGACCACGTTGATCGGTTTACTGAAGACGGCGCGTTTGCTACGTTTGGTT
CGCGTCGCACGGAAGCTAGACCGTTACTCAGAATACGGTACCGCCCTTCT
CATGTTACTAATGTTTGGTTTCGCCCTAGTGGCGCATTGGTTAGCCTGCG
TGTGGTACGCCATTGGAAATTTTGAACGCCATCAAGTCCAAGAAATGGGA
TGGCTTTATAAGTTAGGTATCAATACAAATCAACCGTATAACCGGACAGA
TtctaacagtggaccggacattcAAACCAAGTATTTGACAGCTCTGTATT
TTACATTATCAAGCTTGACAAGTGTTGGGTTTGGGAATGTATCAGCAAAC
ACCAATAGCGAGAAGATATTTACCATTGCTGTTATGCTAGTCGGAGCATT
GATGCATGCGGTTATCTTTGGTAACGTCACGGCAATCATACAACGTTTAT
ATTCGGGTATGGCCCATTACCATTCCACCATGAGACGTGTCCGTGAATTC
ATACGTTTCTATCAGATACCGTCACCGTTGCGGCAACGGTTGGAAGATTA
TGCTCAATATGATTACTCCTATACTAACGGTATTGATATGAACGAGGTTT
TACGGAACTTTCCTGAAGGTTTACAAGCAGACATTTCGTTACACTTAAAC
CGTCATCTTTTGTCCAACAACTTGGCGTTCCGTGGTTGCACTCCAGGTTG
TTTGCGCTCGCTCTCCTTGAAGTTCAATACAACACATTGTCCACCGGGTG
ATTACATCATTCACTATGGTGACGAAATCAACAATTTGTACTGGATCGGC
CGTGGTACGGTAGAAGTTATACAGTGTGATAGTATTATCGCTATACTTGG
TAAAGAGGATTCATTTGGAGAGAACTTTGGCCTGACATACAATCGAGTAA
CTGGCAAAGCAAAAGCCAGTATACGAGCCTTGACTTATTGTGATTTACAT
TCCATTTCCAAAGAAAACCTCATGCATATTATGGCAGCTTATCCAGAATT
TCGAAAAACTTTCAATGTGGATTTGCATATTACTTACGATTTGAGAGATT
CACAGCTTGAAGAAAAAGATGTCAACAGCTCAATCTTCAATTCCTCACCA
TCATTCAACGCGCAACGTTTCTCGAATAACGTACGTACTACGCCTTTCGA
TCGTCTATCGCCTAGTTACAACGGCTCACCTTGCCGGACGTGTACTAGCA
GCGGCTTCACTAAATCAACTACGGAGTTTTCAAGCGATGAGCGACGTGCA
AGTAGACCTTTATTAGACTCGTTATCTGAAGAAGACCCATGCTCCTCCAG
CAGTTGTCAAAGTCGCATGACTAAAAATAAATGTCCAACATCTAATAAAA
TAGTTGATAGTTCTTTTATCGCGACGTCACCAGTAGCTATACGAAGAGAT
ACACATCTTTCAGCTACGTCTCATCATAACGTTGCTGCAACGTCGTACCA
CGATGGATCTTGTACTTTAGAACTGAGACGAGAAGTTGAAGAGATGAGAA
CCCATTTATTCCGTATTGAAAGTCTTTTGAAACAAGACATGAAAAAAGTT
GTCGATTTGTTAGAAGAGAAAGTGACGTCAACATCTTCGACCACGCCCAA
TAAAACAAATAATGATagtaataataacaataatactTCTATCAAGAACA
ACAATACCCATAATGCAACAGTAGTCAAAAATAACAATAACCATACTTCG
ATTCCATCTACAACGACATCCAATCACAACCATATCAAGGTTTTAACAAC
AGACAAAACTAAAATTAATTCTTCATCTTCAAACTCGAACAGGGTTAAGA
ACCAATAGCAATAAACATGATGTTTCGGGgacaaaagaaataaagaaaaa
ggaaataacCGAGACTTTTTAGGTGATTCACGGCAAAAAGTTGCAGTCGT
TTAATAATTCACAGTGAATAAAAGTTGACCTtctctaatttgacgttcta
ctattctaTCCGCTagattattcgataatattgaaagtcaccgacAACGA
AAAACTCTTATTAACGGTGCTCTGTTATTCAAATCCAAATCCGATTCTTG
AATTAGATTAGAATTGAATTAGAGAACGTCAAAAACTTTCCAATCTGGTG
GCAGCTTTTTTACCGTAAATTCAAAAGTCACAgcatatttttggtttttc
ctgTAGAAATTTGTCAATATCTTTGATTTCAGTAAAGAGATAtttacgct
tttttataagaatatactttataaaaatatttatgatgaaattggccaaa
aatcaagaatatactaagaatatcaccatcatggagtTTGGCAACCGAAC
TTAAGTCATCTTACCCCAGTTTCACCGTgataaattttatgaattttgtg
TATGATTCATTTTCTATATTGTCTATATTCCgaataaaaaaaacagtaaG
TGCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00068813-protein

>TCONS_00068813-protein ID=TCONS_00068813-protein|Name=TCONS_00068813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=835bp
KFLKFCEVIINNNLNFDITRKIIWNLTKVFIMVYKAWDTISKTLYGKRVT
VVRKHNHRQKRRTSQKRRMSQAMERSSMAVLQVMSLGSDILPEYQVESPK
IHPWTILHYSPFKAIWDWVVLFLVMYTAIITPYMAAFVLTRDSNEETFAM
HTSHAASAITIADDPLVILDYIVDVMFIIDIFINFRTTFVDVHDEVVSDP
CLVAIHYMKGWFVVDLLAAIPFELLIMIGNTDQTTTLIGLLKTARLLRLV
RVARKLDRYSEYGTALLMLLMFGFALVAHWLACVWYAIGNFERHQVQEMG
WLYKLGINTNQPYNRTDSNSGPDIQTKYLTALYFTLSSLTSVGFGNVSAN
TNSEKIFTIAVMLVGALMHAVIFGNVTAIIQRLYSGMAHYHSTMRRVREF
IRFYQIPSPLRQRLEDYAQYDYSYTNGIDMNEVLRNFPEGLQADISLHLN
RHLLSNNLAFRGCTPGCLRSLSLKFNTTHCPPGDYIIHYGDEINNLYWIG
RGTVEVIQCDSIIAILGKEDSFGENFGLTYNRVTGKAKASIRALTYCDLH
SISKENLMHIMAAYPEFRKTFNVDLHITYDLRDSQLEEKDVNSSIFNSSP
SFNAQRFSNNVRTTPFDRLSPSYNGSPCRTCTSSGFTKSTTEFSSDERRA
SRPLLDSLSEEDPCSSSSCQSRMTKNKCPTSNKIVDSSFIATSPVAIRRD
THLSATSHHNVAATSYHDGSCTLELRREVEEMRTHLFRIESLLKQDMKKV
VDLLEEKVTSTSSTTPNKTNNDSNNNNNTSIKNNNTHNATVVKNNNNHTS
IPSTTTSNHNHIKVLTTDKTKINSSSSNSNRVKNQ
Run BLAST on NCBI

transcript from alignment at scaffold_49:834204..845489+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068813 ID=TCONS_00068813|Name=TCONS_00068813|organism=Clytia hemisphaerica|type=transcript|length=11286bp|location=Sequence derived from alignment at scaffold_49:834204..845489+ (Clytia hemisphaerica)
aagtttttgaaattttgtgaagtaATTATTAAcaacaatttgaattttga
cataacgagaaaaataatttggaaTCTTACAAAGGTTTTCATAATGGTGT
ATAAAGCCTGGGACACGATTTCAAAAACGTTGTACGGCAAACGAGTTACC
GTGGTACGAAAACATAACCATCGTCAGAAGCGACGTACCAGTCAGAAAAG
ACGTATGTCACAAGCTATGGAACGTTCCTCTATGGCTGTCTTACAGGTTA
CTCTATTGTTctagtgtttttttatttttttgttttctttccgAGCATCA
TATCAGGCACATTACTAGTCTGAATCGcggacctctacaaaaccccaggt
agtatataaggagcacgaatccgttagtggatgcgaGCAGCCTAGCACAT
TACGCAATTTATACACATTTGTAAAGAACACATCACTAGCTTTTTTTACA
TCGGCTCTTTATCCGCCGATGCCTTATTTTGAGCTTACGCCCATTTAGGG
CCGTTAATAAATAACGACTAAACTTGTTAAAATCAATAACAGGCTTTAAA
TACTGAATATTGACTTTAATTGGCAATAAATACCCTGCTTTGGTCGCTAC
TTTATTTATAGCTGAAAAAGGACCGAAAGTCAGTATCTCCTTCATAGTTT
CTGGGATCTGAGGTTGTGGTTGTTCTTAATCTGATCTTGATTTTTGGCTA
AATGTCAGTCTTGCTCCTATAAAAACGTGTTTACTCGATAATTTAACGAC
TGTCCGATTCTACTACTCAGAATATCTTATTTACAATCCCTGATGTTATA
TAGTAAATTATTCTTCTATATTTGATACATCTAGAACTTTAAATGCAATG
TCGGTGTATATTTTCCAGCCCTTTATATCAATCAAaaatacccccttctc
acagacccactggggacccttcccactggaatattgtccaaaatattgtc
cccagtggaaaattatccaaaatattgtccccagtggaaaattatcctcc
aattttttgtctccactgaaaataatcaaataaaccaatcctcgctGCGA
AACATGATGctttttttcccatccccactgaattttgtgacttgaaaaaa
atagaattgaaatccccagccataaaaaatatgagaatatcaatccccat
tgagtttcagtccgttgtttttattcccactggctgaaaaaatcccgcTG
CCGGGGTCTGTGAGTAGGGGGAGTTCAAAACCAATCTTATCACTTTGATA
ATGATTTGGTGATACCCTGTAGAGAGCTCatttaaaactaaaatctattt
cattttaaagaattcgcgtgatatatgtattttttttctttcccttaaaa
aaatgaattaatatacagtattaattttttgaaattttagcgttattttg
tgatttttctttttcaaaatttaaatttcttgttATGATACAATTTTGCA
GTGGGAACATCTAGTTTTTTTTAAACGCCTCGGTTTTCTTTTTATGGCTT
AATTTGCTAGATCCttcaaaaaaaagggaaaaagtgGGAATCAAGAAAGA
TGTACCTAAAGATACTTCGTATATTGAGAACGAAGTAAGATGtaggtaac
ctgataacagctggtcaTGATTTTCTTACTGGCACGGTAACCCTCTGAAG
gcccttgaaaattaaccatctgaggaaaatagtcttTCCGCGGTGAATTC
TAcgacaagaatcttgttgtgcgccggaaagtcaaaaactaaattttcct
gatacggcgccctattttTAAACACTATCGCGcaacttttttttgtcatt
cccagtcctgtTAGACAAGCCAGTTGAAGCGCGGTCCTCACAAATTCGtc
atattgttttgttttcacccatctctttagagcttcagtgtGGCGGTGGG
CAGAAACAATCTGATCTCAGTTTAGATGTAGGTATCTATTCACCTATCAA
GTGCCAAAATATGTGTTGAGACGTCAAGAGTGTATTTTTCTTGATTGGGA
TGTGTACTCGCattataaataaacaaaaattagaCAATAAGCCTTTTTCA
TAAATAGTTTTGAGTGCAACGAGTGCCTCGTtctgaaaccattaccaagg
tgattaaatctCTTGAGTCTTCGAATGTTACTTTCATATATAGAGTAAAC
TTCTAATGGACTATTCTGGTGGNttatgagcatgcatacatcgtaacttt
tttaatcgtagggcgagcttggttacaatagcatacttctcctgtttctt
tatacctccatggtgggaatcaatacactcttctcgagatgcataaattt
attgttgtcctcgttttcaaacagatttcattgctataaaataacacatt
cacaatgataattgtgttgttttcacctcatgagacattttgaatttcaa
gtacttttgttttagagttaatgtttgccttttggggatttaaattggtt
taaatgtataatttcatagcaatgaaatctgtttgaaaacgaggacaaca
ataaatttatgcatctcgagaagagtgtattaccatagcaatattttgaa
aactaaGTGCTctcatgacgtaatttttaaaaaggttttcgGGTCCTTCT
TATATGTGTGAATACGTtggaaaacttaaaaaattacaTCTCAAAATCAT
TTGAACAAGAAATCTTCTTCCCTTATCAGCTCGAGGGTAAATCTCTAAAT
ATGTACATACAAATGATATAACGCCGTTGACAAATCAAGAAGTCCAATCG
TCCCAAATCATTGCCTGAGAAAACTAAGAGTTTTTCTGTCTGTCTGagca
taaattttgagattgaccctGTTTCATGTATATGGGACCCTCCTCGCTAT
GTAAGATAAGCCAATGTCGAAATTAAGGCTAGCTAGACAGAAAAACTCTT
AGCTTTCTCAGACACTAATTTTGTGATTTAATGGCGATATGCTTAGGACA
GCCAATTTGTAATCTTGTTTACGATTCATTATACAATCTGCCCGTTGAGT
CCCCAGTTTGAAAATAATCCTTCTAGTTTAGTTGATTATCTAACAAGTAT
ATTGTTCTGGCTCTAAATGGCCCTAAGTAATTGTAAAGTTTATTGTTCTC
GCTCTAAATGGCCCTAAATAACTTTAATAAGTTTATTTTACCAATACTAA
TTGGTCAAAGGTCGCCGCTATCCCCCAAAAATTTACTTAGGGCACAGGGG
ATGTCAGAATATGAACCAAACTTCGGGccgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgacgtTTGCTCCGTCTTATGAATGT
TAAATTTTCCTTGATTATACATAACGCTCTTTTCATGAAACTTTTTGGGG
GTCTTGCGAAAAACTAATAGAATTAAATATAGGTTAGAAACCAagaaaaa
gaaatggaaaggTTTCCAGCAAGGTTGTTTAAGTATTATCGACCTGAGGT
TTTCATTAAGGGGAAATCtataaaaatgtctttgttaCAGGGTCTCACCC
GGTCTCAACAAAATAATGTGTATTTATTAGACTATTTAATTAAGttttat
gaaatttaacttCAGGTCTATTTTTTTACCAACCgtagtttttccttttt
ttatatcctttctatgctcaaacaaaatttcttctcttttttatagGTCC
AGTACCTTTTTTTtgcttcttcatttttagaaattatgatttttgttttt
tatataattattatggtttctcttttttcaattatatatttggatttctt
aaactttttttgtatttgtttgTTTGGGATGTGGAATGGTGGAATGTTGA
TTTTTAAGTTGATGAAAACATAGCTATCCGTGAAAAATACTGTAATATCT
ATACTCCAGAAAAAGTGAAATATCgaactaccttattacacgaatattat
tAGACAAATactcaacggccttgaaattaacacgcaaaaaattagcacga
cttttatttgctttttcaaggacaccacggctggttttaattaagggggt
ttttattaacacgaaatttttcaattcgtgttaataaaatgactagcaat
atttgtgtaataaggtaaatCATAACTTTAAACAGTTGTACTATACTATT
GGTAGCTTGTAGAAATGGGACTAAAACCTACCAAAAAAGAAGGGGAAAAT
TTAAAGAATCAAGTGAAATATGGTACTGGAACATCTGATTGTTTGATTTG
GGATGGCACTGTGGACGGGGGTGATGTCTTTACCGGAAAATCACGATCGG
TCAAAACACCAGTGAGCACTTATTGGTAACCTTCGAAATGATTACATGGA
CATTAAGCTATAATTTAAAGGAAATTATTTAACGTCTCCAATCTCCAACG
ATTGCCTTActcagcatttttaaacaaaaggaaGTACAAGTTTCTCCCCT
TTTAGAGCCGAGCGAGCTTAATATTtaagaaattattttgtttattatgt
tttgtcagcataaagaaATTGGCTCAAAGCGGAAGGAAAACACATTAAAT
AGATTTTGTTCCTGAAGCGAGGTTTTTTAAAACCCACAGAGTTGAAATAT
AAATATATCAAATCATGCTTGATTAATTGGTGATTTATTCTAACCAAGAA
AACGTATTGTTTGCATCAGCAGAATTCCGAATCATAAAATTCTGGATGAT
TGTCTTTCTTATCATTATGTATGGTTTTATCATAGATGTGCTCAAAAGTT
GGCCTTACTAAAATCCGGTGTCTAGCCAACACATCCTCACACTTCTACTA
CCATACATACGTGTAGATATGTAAACATCCGAAAATCTACTATACTGGCA
GTTACGGTAAATACTATATCTACCATTAcagtaaaaataataatttagtA
GATTTACGGATGTTTACATATGTATATACATATAGTAGAAATAAGCGCGA
GATTGGCCTTGTGTAGCCCGGCACGTCTATCTGACGTTACAGGTTTACAA
TTATTTTCAGTTTGTAGTATGACATCGATCTCTAATCGATAACAGTGTAA
CTTCATACAGTGTGTAccaaaaaaagcggacaaatttttacaTACAGTAA
TAATCTCCAAAACTCATCATCTTAACTTAGGGCTTAAAATGTTTGTAATa
ggatttaaattctttgttCAATCAATAGGTACTATACTATAGGTATTCAA
TTTCCAAGAcgattgaataggtttttgagGTTGAAATATTAAGTATTCAA
GTCATAAAACTTTGTATAAATCATTAGGGTtttactttatttaaaaaatg
tgtccgctttttttgggacacactatATATTGAAGACTAACAGACTGCCC
ACCCATCATTcagaagtaaaaaataattacctttttttatatacatttcA
GGTGATGTCTTTAGGATCGGATATTTTACCCGAGTACCAAGTGGAATCTC
CAAAAATCCACCCATGGACAATTCTCCATTACTCACCATTCAAAGCCATC
TGGGATTGGGTGGTCTTATTTCTCGTCATGTATACCGCCATTATCACGCC
CTACATGGCCGCCTTCGTATTAACCAGAGATTCCAACGAGGAAACATTCG
CGATGCATACATCTCATGCCGCTTCTGCAATCACCATAGCTGATGATCCA
TTGGTCATCTTAGATTACATTGTTGATGTCATGTTTATTATTGATATTTT
CATCAACTTTCGAACGACTTTTGTTGATGTACATGACGAGGTTGTCAGTG
ATCCTTGTTTAGTTGCTATCCATTATATGAAGGGATGGTTTGTCGTTGAC
TTGTTAGCTGCCATACCCTTTGAGTTACTCATCATGATTGGAAATACTGA
TCAGGTATTAACAGTTTTTACATTGACTAATTTTTACCTTCCATAAACTA
CTAAAAGTTGGAGGACTGTTTTACGTTCTGCTTAAGCAAAGCATAAAATG
ATGGCTGCCATATTGATCTAGGCTATTTACTCGCGCCTTCAAGTCTATCA
AAAATGAACCCCGGGCTGATGTGCCCGATTAAAGAGAGGAACGGATATTA
TGTTATAGAGTAAAATCCTCAAACCTCTTTTTATCTCATCTGGCTTTAGA
ATAATGGGTTAGAAAACCTATAAGAATCTAGAATTCCAGAAGGTCAGGCT
GATCTAACAGGCTGCATACGTTACAAAGATTGAACTGAAccttttgaaaa
tatcttttctgCTTTCCTTTCAATGTtaagaaatttttactttattttat
ttattcataGACGACCACGTTGATCGGTTTACTGAAGACGGCGCGTTTGC
TACGTTTGGTTCGCGTCGCACGGAAGCTAGACCGTTACTCAGAATACGGT
ACCGCCCTTCTCATGTTACTAATGTTTGGTTTCGCCCTAGTGGCGCATTG
GTTAGCCTGCGTGTGGTACGCCATTGGAAATTTTGAACGCCATCAAGTCC
AAGAAATGGGATGGCTTTATAAGTTAGGTATCAATACAAATCAACCGTAT
AACCGGACAGATtctaacagtggaccggacattcAAACCAAGTATTTGAC
AGCTCTGTATTTTACATTATCAAGCTTGACAAGTGTTGGGTTTGGGAATG
TATCAGCAAACACCAATAGCGAGAAGATATTTACCATTGCTGTTATGCTA
GTCGGAGGTTAGTATGTTAGTAATAACATTAAGTTGAAGGTCTTTTTTAG
GACGTGTGACAAAGTTTTAGCGCTGCGAAACCTACTTTTGTTTATGGTCT
ATTTCCATGTGCAAAGGGAAAGTTCACCACTTCCTTCAATTCTATCGGCC
TATTTGAATGAAGAGTGTATTTCAGACACATTTTTGGGATTAGGTAAATG
ATTAGGACCCTTAAAAATTATTTGTAACATGGATAAAATCGTAGACGATT
TCCAAGCGTCTGGTTTGAAGATCAAGGAATTTAACTTAACATTGCTTCAT
TATTAGTTCTATACTTAGTTCTTAGCAGTTAAAAGAATTACCCATGAAAA
CAGAATACATCAGACTATTGAAATGGGAGCCATTCGGTAATTCTCGGTGA
GATTTACGTGGTCGCACATTACAGTTTTAAAGGTTAGTCTGATGTATTCT
GTTTTNATTTAACTTAACATTGCTTCATTATAGTGACCTTTAAAACTGTA
ATGTGCGACCGCGTAAATCTCGCCGAGAATTACCGAATGGCTCCCATTTC
AATAGTCTGATGTATTCTGTTTCCATGGGTAATTCTTTTAACTGCTAAGA
ATTATAAAGTAAAAGACCTTGGTAAGAACGGGTCATGGATTTGTTACGAC
CCTTTCTTGGTGGCCTGGTGGCgcatttcaaatttgaatcCAAACATAGG
CATAGGGGTACAAAACCTTTTGTTTTCATCTCGTCCGTGGTCGAAAGATg
ataagtctgcgaccgcagtcggagacgactaggggagggcgccactcttt
ctccctggattgctcaacttacccttgatccttcttttaattgctgagca
tcaaccagagaggcatcaagtaccattttaggaatctttggtatgacccg
gctggggttGAACCAACAACCTTGCGAaacgtagccggatgctctaccac
tgcactacggtcgaaAGATGATAGTGATGATGATCAATGGCGTATCGGAT
AGTTGAATGACTAGAGAGCTAACAAACCTAAAACTTCTACTTTCTACTTT
CAGCATTGATGCATGCGGTTATCTTTGGTAACGTCACGGCAATCATACAA
CGTTTATATTCGGGTATGGCCCATTACCATTCCACCATGAGACGTGTCCG
TGAATTCATACGTTTCTATCAGATACCGTCACCGTTGCGGCAACGGTTGG
AAGATTATGCTCAATATGATTACTCCTATACTAACGGTATTGATATGAAC
GAGGTAAGCTATGCGATCGCCTTCTAGAATGACCGACGCGCTCAACAACA
TTTGCCCAACACCCATTTCAATAGCCGGGTGGGAGGTGGAGCACTATTAT
GTCTctatgaataatttttttaactgcTAAGTATATTTGTTATTGAAATT
TGTGGTGATAATGTCTCACAATACTCAAAGCATAGTCCTTAAGCAattcc
aaaataattattttgagtttttttaaggtATACCAGATTAAAATGGTTGC
GTCATTTGCTAATGTAACATTTTTGGAAGTTGTGTTTGAATCCGAACATA
AGggtacaaaatctttttttttcagatcaTAAGAGCCAGTAGAGTCattc
agattttttttgtaattagaaTTTATTATTGAGGTATTtctcaatagacg
atatcggcttaacgtgaaaactcagatttgatccccgaatattgcccaca
atgctttgtgcggaaaaattttcaccgtgaacttttttccgcgcaaagca
ttgtgggcaatattcggggatcaaatctgagttttcacgttaagccgata
tcgtctattaagaAGGTTCCACCTGGGTCTGTAATCACAGAAATGCTCAA
ATGGAATCTCTTTTTCTTTCCACTTATACAGGTTTTACGGAACTTTCCTG
AAGGTTTACAAGCAGACATTTCGTTACACTTAAACCGTCATCTTTTGTCC
AACAACTTGGCGTTCCGTGGTTGCACTCCAGGTTGTTTGCGCTCGCTCTC
CTTGAAGTTCAATACAACACATTGTCCACCGGGTGATTACATCATTCACT
ATGGTGACGAAATCAACAATTTGTACTGGATCGGCCGTGGTACGGTAGAA
GTTATACAGTGTGATAGTATTATCGCTATACTTGGTAAGCAACTTACTAT
AGTCTAAAACCTTTTAAAGATCtaaagtttgcgaccgcagtcgaagtaga
cctgaaggctcctctttcgatagctatctacccgaaggtagcgGATGGCG
CCACCCTTGCTCCCTGGATTGCTTCACATGCCCTTGTTCCTTCCCTTAAT
TGCTGagtatcaagcagagaggcatcaagtaccatttttgtacTAAATGC
AATAAAATTTCTGGTGTAGAGCAGCGAGTTAACGGCTCCGTTTTTCGATT
GACAATTGTAGTGGAGTTCCAcgaattcgaacttctattattcgaatctt
tctctgataattcgaactaaaatattggtcccctcagctagaaAGTTGCT
Ttaatactctctgtaattctgaatctttctctaattcgaagaaaaattct
cggtcccttgaagatcgagtTAGAGAGAAAGTTAACTGTATTTACATTGA
TGGATCGAAATTTTACATGTACCAAATTGTAGTTTAAAACGCATTTAAAA
CATTTATTCTTAGGTAAAGAGGATTCATTTGGAGAGAACTTTGGCCTGAC
ATACAATCGAGTAACTGGCAAAGCAAAAGCCAGTATACGAGCCTTGACTT
ATTGTGATTTACATTCCATTTCCAAAGAAAACCTCATGCATATTATGGCA
GCTTATCCAGAATTTCGAAAAACTTTCAATGTGGATTTGCATATTACTTA
CGATTTGAGAGATTCACAGGTGATGGGATTTCATGTGTATCGTGGGATTG
ATTTGAACCCCgtttttttctcaacttcagttgatgtagaatctgagaat
gtctgtgtgtccTAAATCTAAAATGGTTgggtttggctgaaattttgcac
acttattCCTCgggtgaataaatatttttagggtgtttttttttcatttt
tcaaaatttttgatatttcggGCATGTGGAAAAGTTTTCGTTAAAGTGAG
ACTAAAACTTTGGGTAacctggagactttaaaaatggttggatttggctt
aaattttgcacactaTTATTTCATACCACTTGCTTTAAAAAGTTGCGACC
ATTGTTAGGTTATTGCTTGACTTGACTTGTCAATTTCAAATAGTTTAGTG
CATAACTTTGAACCATTTTTCTCTCGTTTCGTAGCTTGAAGAAAAAGATG
TCAACAGCTCAATCTTCAATTCCTCACCATCATTCAACGCGCAACGTTTC
TCGAATAACGTACGTACTACGCCTTTCGATCGTCTATCGCCTAGTTACAA
CGGCTCACCTTGCCGGACGTGTACTAGCAGCGGCTTCACTAAATCAACTA
CGGAGTTTTCAAGCGATGAGCGACGTGCAAGTAGACCTTTATTAGACTCG
TTATCTGAAGAAGACCCATGCTCCTCCAGCAGTTGTCAAAGTCGCATGAC
TAAAAATAAATGTCCAACATCTAATAAAATAGTTGATAGTTCTTTTATCG
CGACGTCACCAGTAGCTATACGAAGAGATACACATCTTTCAGCTACGTCT
CATCATAACGTTGCTGCAACGTCGTACCACGATGGATCTTGTACTTTAGA
ACTGAGACGAGAAGTTGAAGAGATGAGAACCCATTTATTCCGTATTGAAA
GTCTTTTGAAACAAGACATGAAAAAAGTTGTCGATTTGTTAGAAGAGAAA
GTGACGTCAACATCTTCGACCACGCCCAATAAAACAAATAATGATagtaa
taataacaataatactTCTATCAAGAACAACAATACCCATAATGCAACAG
TAGTCAAAAATAACAATAACCATACTTCGATTCCATCTACAACGACATCC
AATCACAACCATATCAAGGTTTTAACAACAGACAAAACTAAAATTAATTC
TTCATCTTCAAACTCGAACAGGGTTAAGAACCAATAGCAATAAACATGAT
GTTTCGGGgacaaaagaaataaagaaaaaggaaataacCGAGACTTTTTA
GGTGATTCACGGCAAAAAGTTGCAGTCGTTTAATAATTCACAGTGAATAA
AAGTTGACCTtctctaatttgacgttctactattctaTCCGCTagattat
tcgataatattgaaagtcaccgacAACGAAAAACTCTTATTAACGGTGCT
CTGTTATTCAAATCCAAATCCGATTCTTGAATTAGATTAGAATTGAATTA
GAGAACGTCAAAAACTTTCCAATCTGGTGGCAGCTTTTTTACCGTAAATT
CAAAAGTCACAgcatatttttggtttttcctgTAGAAATTTGTCAATATC
TTTGATTTCAGTAAAGAGATAtttacgcttttttataagaatatacttta
taaaaatatttatgatgaaattggccaaaaatcaagaatatactaagaat
atcaccatcatggagtTTGGCAACCGAACTTAAGTCATCTTACCCCAGTT
TCACCGTgataaattttatgaattttgtgTATGATTCATTTTCTATATTG
TCTATATTCCgaataaaaaaaacagtaaGTGCAGAA

Coding sequence (CDS) from alignment at scaffold_49:834204..845489+

>TCONS_00068813 ID=TCONS_00068813|Name=TCONS_00068813|organism=Clytia hemisphaerica|type=CDS|length=2508bp|location=Sequence derived from alignment at scaffold_49:834204..845489+ (Clytia hemisphaerica)
aagtttttgaaattttgtgaagtaATTATTAAcaacaatttgaattttga
cataacgagaaaaataatttggaaTCTTACAAAGGTTTTCATAATGGTGT
ATAAAGCCTGGGACACGATTTCAAAAACGTTGTACGGCAAACGAGTTACC
GTGGTACGAAAACATAACCATCGTCAGAAGCGACGTACCAGTCAGAAAAG
ACGTATGTCACAAGCTATGGAACGTTCCTCTATGGCTGTCTTACAGGTGA
TGTCTTTAGGATCGGATATTTTACCCGAGTACCAAGTGGAATCTCCAAAA
ATCCACCCATGGACAATTCTCCATTACTCACCATTCAAAGCCATCTGGGA
TTGGGTGGTCTTATTTCTCGTCATGTATACCGCCATTATCACGCCCTACA
TGGCCGCCTTCGTATTAACCAGAGATTCCAACGAGGAAACATTCGCGATG
CATACATCTCATGCCGCTTCTGCAATCACCATAGCTGATGATCCATTGGT
CATCTTAGATTACATTGTTGATGTCATGTTTATTATTGATATTTTCATCA
ACTTTCGAACGACTTTTGTTGATGTACATGACGAGGTTGTCAGTGATCCT
TGTTTAGTTGCTATCCATTATATGAAGGGATGGTTTGTCGTTGACTTGTT
AGCTGCCATACCCTTTGAGTTACTCATCATGATTGGAAATACTGATCAGA
CGACCACGTTGATCGGTTTACTGAAGACGGCGCGTTTGCTACGTTTGGTT
CGCGTCGCACGGAAGCTAGACCGTTACTCAGAATACGGTACCGCCCTTCT
CATGTTACTAATGTTTGGTTTCGCCCTAGTGGCGCATTGGTTAGCCTGCG
TGTGGTACGCCATTGGAAATTTTGAACGCCATCAAGTCCAAGAAATGGGA
TGGCTTTATAAGTTAGGTATCAATACAAATCAACCGTATAACCGGACAGA
TtctaacagtggaccggacattcAAACCAAGTATTTGACAGCTCTGTATT
TTACATTATCAAGCTTGACAAGTGTTGGGTTTGGGAATGTATCAGCAAAC
ACCAATAGCGAGAAGATATTTACCATTGCTGTTATGCTAGTCGGAGCATT
GATGCATGCGGTTATCTTTGGTAACGTCACGGCAATCATACAACGTTTAT
ATTCGGGTATGGCCCATTACCATTCCACCATGAGACGTGTCCGTGAATTC
ATACGTTTCTATCAGATACCGTCACCGTTGCGGCAACGGTTGGAAGATTA
TGCTCAATATGATTACTCCTATACTAACGGTATTGATATGAACGAGGTTT
TACGGAACTTTCCTGAAGGTTTACAAGCAGACATTTCGTTACACTTAAAC
CGTCATCTTTTGTCCAACAACTTGGCGTTCCGTGGTTGCACTCCAGGTTG
TTTGCGCTCGCTCTCCTTGAAGTTCAATACAACACATTGTCCACCGGGTG
ATTACATCATTCACTATGGTGACGAAATCAACAATTTGTACTGGATCGGC
CGTGGTACGGTAGAAGTTATACAGTGTGATAGTATTATCGCTATACTTGG
TAAAGAGGATTCATTTGGAGAGAACTTTGGCCTGACATACAATCGAGTAA
CTGGCAAAGCAAAAGCCAGTATACGAGCCTTGACTTATTGTGATTTACAT
TCCATTTCCAAAGAAAACCTCATGCATATTATGGCAGCTTATCCAGAATT
TCGAAAAACTTTCAATGTGGATTTGCATATTACTTACGATTTGAGAGATT
CACAGCTTGAAGAAAAAGATGTCAACAGCTCAATCTTCAATTCCTCACCA
TCATTCAACGCGCAACGTTTCTCGAATAACGTACGTACTACGCCTTTCGA
TCGTCTATCGCCTAGTTACAACGGCTCACCTTGCCGGACGTGTACTAGCA
GCGGCTTCACTAAATCAACTACGGAGTTTTCAAGCGATGAGCGACGTGCA
AGTAGACCTTTATTAGACTCGTTATCTGAAGAAGACCCATGCTCCTCCAG
CAGTTGTCAAAGTCGCATGACTAAAAATAAATGTCCAACATCTAATAAAA
TAGTTGATAGTTCTTTTATCGCGACGTCACCAGTAGCTATACGAAGAGAT
ACACATCTTTCAGCTACGTCTCATCATAACGTTGCTGCAACGTCGTACCA
CGATGGATCTTGTACTTTAGAACTGAGACGAGAAGTTGAAGAGATGAGAA
CCCATTTATTCCGTATTGAAAGTCTTTTGAAACAAGACATGAAAAAAGTT
GTCGATTTGTTAGAAGAGAAAGTGACGTCAACATCTTCGACCACGCCCAA
TAAAACAAATAATGATagtaataataacaataatactTCTATCAAGAACA
ACAATACCCATAATGCAACAGTAGTCAAAAATAACAATAACCATACTTCG
ATTCCATCTACAACGACATCCAATCACAACCATATCAAGGTTTTAACAAC
AGACAAAACTAAAATTAATTCTTCATCTTCAAACTCGAACAGGGTTAAGA
ACCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042905XLOC_042905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068813-exon-scaffold_49-1491911889:834204..834449TCONS_00068813-exon-scaffold_49-1491911889:834204..834449Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:834204..834449TCONS_00068813-exon-scaffold_49-1510915933:834204..834449Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:834204..834449TCONS_00068813-exon-scaffold_49-1575043694:834204..834449Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1491911889:839605..840057TCONS_00068813-exon-scaffold_49-1491911889:839605..840057Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:839605..840057TCONS_00068813-exon-scaffold_49-1510915933:839605..840057Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:839605..840057TCONS_00068813-exon-scaffold_49-1575043694:839605..840057Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1491911889:840464..840860TCONS_00068813-exon-scaffold_49-1491911889:840464..840860Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:840464..840860TCONS_00068813-exon-scaffold_49-1510915933:840464..840860Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:840464..840860TCONS_00068813-exon-scaffold_49-1575043694:840464..840860Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1491911889:841907..842106TCONS_00068813-exon-scaffold_49-1491911889:841907..842106Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:841907..842106TCONS_00068813-exon-scaffold_49-1510915933:841907..842106Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:841907..842106TCONS_00068813-exon-scaffold_49-1575043694:841907..842106Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1491911889:842735..842987TCONS_00068813-exon-scaffold_49-1491911889:842735..842987Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:842735..842987TCONS_00068813-exon-scaffold_49-1510915933:842735..842987Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:842735..842987TCONS_00068813-exon-scaffold_49-1575043694:842735..842987Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1491911889:843517..843722TCONS_00068813-exon-scaffold_49-1491911889:843517..843722Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:843517..843722TCONS_00068813-exon-scaffold_49-1510915933:843517..843722Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:843517..843722TCONS_00068813-exon-scaffold_49-1575043694:843517..843722Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1491911889:844138..845489TCONS_00068813-exon-scaffold_49-1491911889:844138..845489Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1510915933:844138..845489TCONS_00068813-exon-scaffold_49-1510915933:844138..845489Clytia hemisphaericaexon
TCONS_00068813-exon-scaffold_49-1575043694:844138..845489TCONS_00068813-exon-scaffold_49-1575043694:844138..845489Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068813-proteinTCONS_00068813-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:834204..845489 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.201636	0.0405749	0	0	0	0	0	0	0	0	0.11843	0.524315	0.359057	0.111736	0.483506	1.36169	0	0.21804	2.02995	1.91673	2.06338	1.22359	0.649316	1.59637	1.2832	0.908782	0	1.89287
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003938K_chnl_volt-dep_EAG/ELK/ERG
IPR003967K_chnl_volt-dep_ERG
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
IPR005821Ion_trans_dom
IPR018490cNMP-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
[Close]
BLAST of TCONS_00068813 vs. Swiss-Prot (Human)
Match: KCNH6 (Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1)

HSP 1 Score: 555.444 bits (1430), Expect = 4.218e-180
Identity = 306/506 (60.47%), Postives = 399/506 (78.85%), Query Frame = 1 
Query:  238 VLQVMSLGSDILPEYQVESPKIHPWTILHYSPFKAIWDWVVLFLVMYTAIITPYMAAFVLTRDSNEETFAMHTSHAASAITIADDPLVILDYXXXXXXXXXXXXNFRTTFVDVHDEVVSDPCLVAIHYMKGWFVVDLLAAIPFELLIMIGNTDQTTTLIGXXXXXXXXXXXXXXXXXDRYSEYXXXXXXXXXXXXXXVAHWLACVWYAIGNFERHQVQ-EMGWLYKLGINTNQPYNRTDSNSGPDIQTKYLTALYFTLSSLTSVGFGNVSANTNSEKIFTIAVMLVGALMHAVIFGNVTAIIQRLYSGMAHYHSTMRRVREFIRFYQIPSPLRQRLEDYAQYDYSYTNGIDMNEVLRNFPEGLQADIXXXXXXXXXXXXXAFRGCTPGCLRSLSLKFNTTHCPPGDYIIHYGDEINNLYWIGRGTVEVIQCDSIIAILGKEDSFGENFGLTYNRVTGKAKASIRALTYCDLHSISKENLMHIMAAYPEFRKTFNVDLHITYDLRDS 1752
            V QV+SLG+D+LPEY++++P+IH WTILHYSPFKA+WDW++L LV+YTA+ TPY AAF+L+ D +E      +   A + T +  PL ++D IVD+MF++DI INFRTT+V+ +DEVVS P  +A+HY KGWF++D++AAIPF+LLI    +D+TTTLIGLLKTARLLRLVRVARKLDRYSEYG A+L LLM  FAL+AHWLAC+WYAIGN ER  ++ ++GWL  LG+   + YN +D  SGP +Q KY+TALYFT SSLTSVGFGNVS NTNSEK+F+I VML+G+LM+A IFGNV+AIIQRLYSG A YH+ M RV+EFIRF+QIP+PLRQRLE+Y Q+ +SYTNGIDMN VL+ FPE LQADI LHL+R LL +  AF G   GCLR+L++KF TTH PPGD ++H GD ++ LY+I RG++E+++ D ++AILGK D FGE   L  +   GK+ A +RALTYCDLH I + +L+ ++  YP F ++F   L +T++LRD+
Sbjct:  223 VTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLS-DQDE------SRRGACSYTCS--PLTVVDLIVDIMFVVDIVINFRTTYVNTNDEVVSHPRRIAVHYFKGWFLIDMVAAIPFDLLIFRTGSDETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNVERPYLEHKIGWLDSLGVQLGKRYNGSDPASGPSVQDKYVTALYFTFSSLTSVGFGNVSPNTNSEKVFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFSGAGKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRGSIEILRDDVVVAILGKNDIFGEPVSL--HAQPGKSSADVRALTYCDLHKIQRADLLEVLDMYPAFAESFWSKLEVTFNLRDA 717
The following BLAST results are available for this feature:
BLAST of TCONS_00068813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH64.218e-18060.47Potassium voltage-gated channel subfamily H member... [more]
back to top