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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068911 ID=TCONS_00068911|Name=TCONS_00068911|organism=Clytia hemisphaerica|type=transcript|length=3591bpRun BLAST on NCBI protein sequence of TCONS_00068911-protein >TCONS_00068911-protein ID=TCONS_00068911-protein|Name=TCONS_00068911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp MGVALSRRNVDFELICKTGDVKGAGTDSNVYTVIVDEDEDKSRNVLLDCNRun BLAST on NCBI transcript from alignment at scaffold_49:848572..870276- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068911 ID=TCONS_00068911|Name=TCONS_00068911|organism=Clytia hemisphaerica|type=transcript|length=21705bp|location=Sequence derived from alignment at scaffold_49:848572..870276- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:848572..870276- >TCONS_00068911 ID=TCONS_00068911|Name=TCONS_00068911|organism=Clytia hemisphaerica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_49:848572..870276- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068911 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 280.026 bits (715), Expect = 1.343e-80 Identity = 211/723 (29.18%), Postives = 343/723 (47.44%), Query Frame = 2
Query: 209 FELICKTGDVKGAGTDSNVYTVIVDEDEDKSRNVLLDCNWRNDFEQGNIDTFKIRNVPNLGRVKSILLWRDSSGVNDDWFVEYIKVRQYTVGKSDNSTDQNGNVSVNSTEQFKDIDGNHMKETNQSTGSLRQKVEYEYPFPINRWIEPNRTYTFTIYDSLLPQDDKN---PDQRFKELEEKRERYGLKGDCGEAPKQIDV-----LPREESFSNDYKWDIV---GKKMRLLAQKKFLKLRTSSKWENLDALVDVY-KGSFGIPYGYYN-WKSDEKFGQQRMRGCNATMLELCTEIPKNFPVTGEMADPLLE-ETSLEEALKDRRIYIINLDVLNDIICKDC-----RTICPAMALFYDKPDGTLLPIAIQLFQEPAENNPIFLPSDPEYTWMLAKMFFNNAECCLHQTCTHLGFTHLVCESICISIHRSLSPSHPVFRLLGPHFLYLIAINSLAVQKLLSPEGWIDITMTMGVSGLFQILKKKWKDWRLDTDGWLPSELKKRQVDDDERLTGYMYRKDASTLHQAIWDYVSEVLTNIYGESTEKLTDDFEIQQWGACLTNCDTGVGIKGVFGDG---KFEQLDDLIKTVTSVIYLSSVAHAAANFCQYDEYAFPPNYPAILNGKAPSSKAEITESDVLSYLPNKDTTLSIMVVTKILSDRGTNG--LGDFEIQYQYEPKAVEAVEKFRARLAEISKEIKERNANMKDPYPYLDPEEVPNAISI 2305
+ + TG AGTD +Y +V S LLD + NDFE+G +D++ + LG ++ + + + +NDDW+++YI + K G++++ FP RWI + + L +DD+ R KELE ++++Y P ID LPR+ F ++ D V K M L +F+ + SS W + ++ K S I N W+ D FG Q + GCN ++ CTE+P+ PVT EM + LE + SLE+ ++ I+I++ ++L+ I + + + L Y ++PIAIQL Q P + NPIFLPSD +Y W+LAK++ +++ +HQT THL THLV E I+++R L HP+F+LL H + IAIN+ A ++L+ G D G G Q++++ KD + P +K R ++ E + Y YR D + +AI + +EV+ +IY E + + +D E+Q N G++G G + + L + +T VI+ +S HAA NF QYD ++ PN P + P++K +T ++ LP++ + + LS N LG + ++ E EA+ +FR L I I ERN + PY YL P+ +PN+++I
Sbjct: 4 YTVTVATGSQWFAGTDDYIYLSLVG-SAGCSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITL--------------------------KTPHGDYIE------------------FPCYRWITGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSS-WNDFADFEKIFVKISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTELPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLC-FPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVV-DIYYEGDQVVEEDPELQD----FVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00068911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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