TCONS_00068924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068924
Unique NameTCONS_00068924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068924 ID=TCONS_00068924|Name=TCONS_00068924|organism=Clytia hemisphaerica|type=transcript|length=241bp
TAGNGCTCTCTCTATCCGTGATGGTGATCTCATCAGACATTATCGCATCA
AATCTACAGACCATGGTCGCTATTTCATTGCCAGGAAATCGGAATTCAAC
ACCTTGACAGAGTTGGTGGATTATTACAGTCATTCCTCTGATGAANCCGT
TTTTGCTTAGTAAGCATTTTGTCTACTTTCAATATTATGTTATTGACAAA
CAAGGTAGCCTTGTTATGACTGTGTTTCTTTTATGGGTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_49:259921..260161

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068924 ID=TCONS_00068924|Name=TCONS_00068924|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at scaffold_49:259921..260161 (Clytia hemisphaerica)
AGCACCCATAAAAGAAACACAGTCATAACAAGGCTACCTTGTTTGTCAAT
AACATAATATTGAAAGTAGACAAAATGCTTACTAAGCAAAAACGGNTTCA
TCAGAGGAATGACTGTAATAATCCACCAACTCTGTCAAGGTGTTGAATTC
CGATTTCCTGGCAATGAAATAGCGACCATGGTCTGTAGATTTGATGCGAT
AATGTCTGATGAGATCACCATCACGGATAGAGAGAGCNCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042944XLOC_042944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068924-exon-scaffold_49-1491911889:259921..260161TCONS_00068924-exon-scaffold_49-1491911889:259921..260161Clytia hemisphaericaexon
TCONS_00068924-exon-scaffold_49-1510915933:259921..260161TCONS_00068924-exon-scaffold_49-1510915933:259921..260161Clytia hemisphaericaexon
TCONS_00068924-exon-scaffold_49-1575043694:259921..260161TCONS_00068924-exon-scaffold_49-1575043694:259921..260161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:259921..260161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.6212	4.31554	8.01721	1.9609	0	0	0	0	41.7678	26.792	40.3525	24.7577	44.7374	34.8452	53.2742	38.2941	46.5107	40.1807	41.3986	47.2589	29.0959	20.0357	20.2967	31.3695	0	1.69622	23.0592	18.1333	23.5773	31.0278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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