TCONS_00068935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068935
Unique NameTCONS_00068935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068935 ID=TCONS_00068935|Name=TCONS_00068935|organism=Clytia hemisphaerica|type=transcript|length=842bp
ccgttaaatacaaaaggaatctaAAAGAAACTTGTAGACCTAATTGATTT
AAActttggtctgaacacgacctataGGTACATAAGGGTCATAAAATTTC
GCATAAATCATgaagattttactttatataaaaatatgtcCGCTTTTTTG
GGATACACACTGTAATAGCATAACACCTCTGTTGGGATAAACAAATTGCA
TAAAAGGATTAGAATTATGCAAGCAGATACTTTCGGCAGATGATATCCAC
AGTTAATTTTCCAAAATCCTTTGTTATCTTAGTTTAATGAAgataaaaca
aagaatttttgatAATCCCGAGGAGAaaaattctaaacaaaatgTAATGC
TAACAGCACCGTAAGATCAACCCTGTCGCATCAAAAAGTAGTATTTTTCC
AAATGACAAATCATTTTATTCAGAACCCGTGAAATCTGTTTCAATAAGAA
TGCATATTGtctaaattttcaataattctttCGCACCCATTATACATAAA
AAAGAATTGNGGAACCCGTGAAATTTGTTTCAATAAGAATGCATATTGtc
taaattttcaataattctttCACACCCATTATACATAAAAAAGAAGTGTA
TTTCGATgtcgaaaatgaaaattactGTTACTTAAATTTAATTTCTGCCA
CTTTTGAGATGTTCTGctatttctgctgacgtcatcaaaatatttacaat
catagaatgggctcttccaaaaaaaattttacatgggggttcaggatata
ttgtccgggggtagcaaaaaatcatcaaaatttgccttgtccggggtgta
aatttgctctgtccgggggtaatttggtgtGTCCGGGGGGTC
Run BLAST on NCBI

transcript from alignment at scaffold_49:558093..558934

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068935 ID=TCONS_00068935|Name=TCONS_00068935|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at scaffold_49:558093..558934 (Clytia hemisphaerica)
GACCCCCCGGACacaccaaattacccccggacagagcaaatttacacccc
ggacaaggcaaattttgatgattttttgctacccccggacaatatatcct
gaacccccatgtaaaattttttttggaagagcccattctatgattgtaaa
tattttgatgacgtcagcagaaatagCAGAACATCTCAAAAGTGGCAGAA
ATTAAATTTAAGTAACagtaattttcattttcgacATCGAAATACACTTC
TTTTTTATGTATAATGGGTGTGaaagaattattgaaaatttagaCAATAT
GCATTCTTATTGAAACAAATTTCACGGGTTCCNCAATTCTTTTTTATGTA
TAATGGGTGCGaaagaattattgaaaatttagaCAATATGCATTCTTATT
GAAACAGATTTCACGGGTTCTGAATAAAATGATTTGTCATTTGGAAAAAT
ACTACTTTTTGATGCGACAGGGTTGATCTTACGGTGCTGTTAGCATTAca
ttttgtttagaattttTCTCCTCGGGATTatcaaaaattctttgttttat
cTTCATTAAACTAAGATAACAAAGGATTTTGGAAAATTAACTGTGGATAT
CATCTGCCGAAAGTATCTGCTTGCATAATTCTAATCCTTTTATGCAATTT
GTTTATCCCAACAGAGGTGTTATGCTATTACAGTGTGTATCCCAAAAAAG
CGgacatatttttatataaagtaaaatcttcATGATTTATGCGAAATTTT
ATGACCCTTATGTACCtataggtcgtgttcagaccaaagTTTAAATCAAT
TAGGTCTACAAGTTTCTTTtagattccttttgtatttaacgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042955XLOC_042955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068935-exon-scaffold_49-1491911889:558093..558934TCONS_00068935-exon-scaffold_49-1491911889:558093..558934Clytia hemisphaericaexon
TCONS_00068935-exon-scaffold_49-1510915933:558093..558934TCONS_00068935-exon-scaffold_49-1510915933:558093..558934Clytia hemisphaericaexon
TCONS_00068935-exon-scaffold_49-1575043694:558093..558934TCONS_00068935-exon-scaffold_49-1575043694:558093..558934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:558093..558934 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.40392	0.283057	0.10475	0	1.52026	0.902576	2.45793	3.99406	0.818045	0.428928	0.29938	0.573476	0.529064	0.357911	0.486859	0.241527	0.132103	0.532565	0.519617	0.37793	1.45096	0.858718	0.691219	0.618486	0.0635831	0.175592	1.92023	1.60035	1.36883	1.49335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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