|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069085 ID=TCONS_00069085|Name=TCONS_00069085|organism=Clytia hemisphaerica|type=transcript|length=3066bpRun BLAST on NCBI protein sequence of TCONS_00069085-protein >TCONS_00069085-protein ID=TCONS_00069085-protein|Name=TCONS_00069085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp MKSMFRPRDYASKHSNLFSQQRRLRHLTCIIGRNIDPNLVPISKSMKSSLRun BLAST on NCBI transcript from alignment at scaffold_493:259419..278131+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069085 ID=TCONS_00069085|Name=TCONS_00069085|organism=Clytia hemisphaerica|type=transcript|length=18713bp|location=Sequence derived from alignment at scaffold_493:259419..278131+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_493:259419..278131+ >TCONS_00069085 ID=TCONS_00069085|Name=TCONS_00069085|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_493:259419..278131+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069085 vs. Swiss-Prot (Human)
Match: UVRAG (UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 3.032e-64 Identity = 170/471 (36.09%), Postives = 242/471 (51.38%), Query Frame = 3
Query: 138 HSNLFSQQRRLRHLTCIIGRNIDPNLVPIXXXXXXXXXXXYFTIHDAS--DLSTVFYKSEIIENTLNPNWKEFDNETFYKSPAY--NTLSEITVIIWGARKLGQFRAISRSDINFSGLVFLQENLRKHEGQYESNCLLFQMFGGYYASASALPKEKLENRILSENTRVPNHQVKSSYKQSSLMRLHGVIKAIQQTRQQVNTVQGQMDALLGAHQSNTEKTSKKELLTFTNKLLSEELNQLKQKHXXXXXXXXXXXXXXXXXXXXXXXXTDDLEQYISRMKISHSAHMINKESLSQF--------------TSRLAHRRRQLAAELSYIFPIIELPALKDSKHEYAISGVRLPNSEDFVGEDDTMLSVSLGYVAQLVYMMAKFLELPLRYPIKAMGSRSSVFDPVTDKLTDRQREFPLYLKGKE-FQFHYGVFLLNKNIAQLRYHNEIGTSDLRNTLENLKRLLEDKFGVRI 1493
H L SQQRRLRHL I RNI LL YFT+H S + FY+SE+I+N+LNP W+ D F P ++S V IWG ++ ++ + + GL +L + + N ++F + GYY + + N + +V + V++SY SL+RLH AI+QT+ V + +++ L ++ E K E L +L EL + K+ E +++ L+ S H + KESL++ ++L R RQL +ELSYI+PI +L KD Y + GV+LPNSEDF +DD ++V+LGY A LV M++ FL++PLRYPI GSRS++ D + DKLT+++REFPLY KG E QF YGV+LLNKNIAQLRY + +GT DLR TL NLK +E VR
Sbjct: 32 HVELPSQQRRLRHLRNIAARNI-------VNRNGHQLLDTYFTLHLCSTEKIYKEFYRSEVIKNSLNPTWRSLD---FGIMPDRLDTSVSCFVVKIWGGKE-NIYQLLIEWKVCLDGLKYLGQQIHARN----QNEIIFGLNDGYYGAP--FEHKGYSNAQKTILLQVDQNCVRNSYDVFSLLRLHRAQCAIKQTQVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNELERQKKALGREVALLHKQQIA--------------LQDKGSAFSAEHLKLQLQKESLNELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPI-DLNEHKD----YFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFMEHGLMVRC 466 The following BLAST results are available for this feature:
BLAST of TCONS_00069085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.