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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069174 ID=TCONS_00069174|Name=TCONS_00069174|organism=Clytia hemisphaerica|type=transcript|length=2648bp
aataaatttctattaCATTGCTTTGTAGGCAAAACTTATTCTTTAACTAt
taaactttctttttctaGATTTGTGCAGTTTCCCAGATTTCTCAAAAGGA
TCTGCAGTTGCAACGATTACTAACTGACATCTATATACCAAACCCAAAAA
GCAAACTTATTCGAGGAAGAAACCAATTCAATCAGTTAACTGTTAAAACA
TGGTCGTGGTACGTTCCCTGAAAGATATTTTGGCACTCAAAATCAAAGCA
CGTCATGACTCGCCGTGTGACCAATTCAGTCGTCTCTTCATGACCAAGAT
GTTCCTCATTGCAGCCGTTATAATGGGTTTCGATTATTTTTCCGATCGTA
TTTCATGTATTCATCCGAAGAAAACGGATCTAACGAAAGAGTTTATACAT
GCTGCATGCTGGATATCAGGCTTCTATGTCTACAAAGAAATGAGGGACCG
TCCCAGAGAGAGCGGTTATTATGGAATCCCATACAAAATTGACCACGATG
GTATAGACACTCAAACACAACAACTTTGTCTTACCAACAATGTTAAAGTA
TTTCGTCCAGAATGTCAATCCATGACTCGAATCTATTATCTCCAGTATCA
GTGGATGCCATTTTATATTGGTGCACTGGGTGTCCTGTATTATCTCCCTT
ATATACTGTTCAGGATTATCAACGTAGATTTGATCAGTTTGAAATCCGTC
TTAAAATCAGTCACCAGTGATGCAGACCATATCGTTCGAAATTACTTCAA
CTATAAAATCAATTCGATCAGTAAATTACGAATGCGAGTGGTCCTGAATT
TATTCGTCAAATGTCTTTACATTGTTGTCAATTtgtttggtttttatttc
actGATTATTTACTGCATGGTAATTATAGAAGTTATGGGACGGAATATGT
GCGATGGGCACGTTCAGATTCGGCTCGAAGTCATTTGCCCATCAAGTTTA
GAAAAGGACCTAAGCCAGGTAACCATCTTCTCCCAACCATGGGTTATTGT
GAAGTCGAAGAAGCCTCCAAAGACCAGTTAACAGTTCACCATAACAGCTA
TGTATTCCTATGTGAAATCTCCACAAATATCCTATACCAATACGTCTTGG
TAGTCCTCTGGTTCCTCTTCATCATCAGCATATGTATCTCCATCATTGGT
CTACTTAGCGCTTTATTCGGACATTTGTTTAAGCTAACCTGTTATAGTCG
AAGCTCACCAAAGAAGACCATCTATCGCGTCATCACTCTCAGAGAAGCTG
AATATctgaattttatcaaaactaagAATATGGTCATGTATGGTGAAGTG
CTTAGGAAGCTGAAACAACAACGATCTGATTTGCAAGGGAAGATTATTGA
TGGGTTTGAAACAAGTAATGGATTTGTTTAATAGAATTTTCTAAGAAGGG
ACTCGACGGAAAATAAACAAGAGTAGAGCAGTAGAAAAATGAAGAGATTG
GGAATAGAAGAATTCTGTAGTAATTGACGAGCCAACCACGCACACACACA
CACTTTGATAATAGGAAGTTGAAGGTATATGCGAGGAAGAAATTAGGACA
CTTCCAGGAGTAAGCAAGAACACCACCAGGTGGGATCAAGGACACCTCCA
GGTATAAGCCTGGACACCTCCAGGTGGAGGCCTGTTTACATTCAGGAGGA
AATAGAACACCTCCGTGAGGAAGCTATGATATCGTCTGGAGGAAGCTATG
AAGCCCTCTGGAGATAACCAGTACACCTCCTGGGGAAACCAGAAGGAGCC
AGAAGGAAGCACTCGATCATACACCCTGATACATATACATACATTTCGTT
GTGAACACCTTTTAGAAGATAAAAAGATAGCAATTTCACCAAATAAAGAC
ATAAAATTATACGACTGGCAAACTCGAGAACCATTGTAGAAAACAAGTTG
TAGAAATGCATTTTTAAAACTTCTATATTAGAAGGTTGACAATATATAAT
GATGGTGCAAGGTAGAAAAATACAAGAGAACGCTTTCGAGTTAAGTTTTG
CTAAATGATAAACTCATGGATGAATAAATTTTGTATGaaatattaatttt
ctttttttagccaTGTTCATCAGGAATGGGTTAGAAGTGAAAGCGTCAGC
TCCAAACGCAGTCAATGGTTCGATTCGATTGTGCTGATGAAAAATAACGT
ACAGGCTCTGGTGACGCTTTTCGAAGAAAGAAGGGTCACTATTTAAAGGC
GGGCACGGGGGGATGTTGCCACCAAATCTTTTGGGATCACATCTGTATTT
AAGATGTGTGTACACTTGTAcctgaatttttggaaatttatacAGAAAGA
TGTCCTAAATTTATTGATTTAAAGTTTATGAATTAAATCTTTTTTGTACA
CTGCTGCATCGATATCTTCAAAGGGAAGTTATTTCTTTTGGACCCATGAC
TATTAATGAATGGCAGTGTCTGCACTTAAATATTTGATATTAATTGGAGA
CATTTGTgtacacatttttataagcaatctAGATTTTGGCCTCAGGGTGG
GAGTTGCTTAAAATTCTATCCCAATTTTTGAAGGACTTTCCATAACCAGT
TCTCATATTATCATCAGTTACTGTATCACACTTTCACTCGTACGTTCAGA
GCCTGATGGCTCGGATAAGATGacgaaaaatttgaagataTATACCAT Run BLAST on NCBI transcript from alignment at scaffold_495:179982..184024- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069174 ID=TCONS_00069174|Name=TCONS_00069174|organism=Clytia hemisphaerica|type=transcript|length=4043bp|location=Sequence derived from alignment at scaffold_495:179982..184024- (Clytia hemisphaerica)
AATAAATTTCTATTACATTGCTTTGTAGGCAAAACTTATTCTTTAACTAT
TAAACTTTCTTTTTCTAGATTTGTGCAGTTTCCCAGATTTCTCAAAAGGA
TCTGCAGTTGCAACGATTACTAACTGACATCTATATACCAAACCCAAAAA
GCAAACTTATTCGAGGAAGAAACCAATTCAATCAGTTAACTGTTAAAACA
TGGTCGTGGTACGTTCCCTGAAAGATATTTTGGCACTCAAAATCAAAGCA
CGTCATGACTCGCCGTGTGACCAATTCAGTCGTCTCTTCATGACCAAGAT
GTTCCTCATTGCAGCCGTTATAATGGGTTTCGATTATTTTTCCGATCGTA
TTTCATGTATTCATCCGAAGAAAACGGATCTAACGAAAGAGTTTATACAT
GCTGCATGCTGGATATCAGGCTTCTATGTGTAAGTTTTATTGATGTTGAT
GTTTCGTTCAAGCCTGATACAATTTTTTTAGTAAGAGCATTCAAAATTTT
TTGAGCCTTCGGATGTTTTTAACTATTTGAGTATTAAGCCTAAAAATGCT
CTTAACATGATCTTAATTTCACCATTTTGTGAGTATGTTGGTCCATTCTC
CTTGGAAATTGAGTTTCTTAGAGTTCTCGTACTCGTCTAACTTAGGCCCG
GCACGAAAAACATTATAATTCGCCGGTCTAAATATTCGATTCGCTGCCTC
AAGTATATATTCACGCCAATTAATACACTACACTGGGCTTGCTAAGACTT
TGCCGTTCTACATCATAGAACGCTTTGATAACGATTCGCTAGTCTATCAA
AAACAAAACAAAACCCCTGTATACTAAGACTTTTTATTGTTTACAATATG
CTTTTCAATATTTTCTCTTCAGCTACAAAGAAATGAGGGACCGTCCCAGA
GAGAGCGGTTATTATGGAATCCCATACAAAATTGACCACGATGGTATAGA
CACTCAAACACAACAACTTTGTCTTACCAACAATGTTAAAGTATTTCGTC
CAGAATGTCAATCCATGACTCGAATCTATTATCTCCAGTATCAGTGGATG
CCATTTTATATTGGTGCACTGGGTGTCCTGTATTATCTCCCTTATATACT
GTTCAGGTGTGTAATATTTTACATGGTCGAATATTTGAAACTATGTACCT
CTTTTTATCGTCAATTACAAATCTTAAAGGACACACCATATGACGTATCT
TCTACCAAACAAAAGAAAAAGAAAAACTCCCTCACCCTCCACAAATTTTC
TCCCGCCGTGCACAAATTTTCTCCCAAACTATTTTGAGTGTATATTTGCT
GATCTGAACGTCACCTCACAAGAAAGCAATCTCTGTTGGAATCTACTCCT
CTTTAATACAAAATGAAGCCATTCTTTTGGTTAGAAGTGACGTAAAACTT
GAATTTAACCAATAGAATGGTTTCATTTAGCTTCGGAGCGGAACGGAACC
GTAGCGTGTCAACGTAGTCTAAGACCATGTTCACACATTACTGTTCCGTT
TCGCTCCGGTATGATTTTTGTTATGGATCGAATGTGTTCACATTGGTTTC
GGAACGTTTCGAAGTAAGAAAACGAAGCAGTTTCGTTCCGATGAATAGAG
TGGAGTGAAACCGTTTTGCTTTGTAACGTCTCCTTTTTTGACGTTTCGAA
CTTTGACGTTCACACTTGTTTCGGAACTGTTTCGTTTCGGAACGGAACGG
AACCGTAACGTCTGAACATGGTCTAAATCATTCCATTCTTTTCTTTCTTT
ATTTTACAGGATTATCAACGTAGATTTGATCAGTTTGAAATCCGTCTTAA
AATCAGTCACCAGTGATGCAGACCATATCGTTCGAAATTACTTCAACTAT
AAAATCAATTCGATCAGTAAATTACGAATGCGAGTGGTCCTGAATTTATT
CGTCAAATGTCTTTACATTGTTGTCAATTTGTTTGGTTTTTATTTCACTG
ATTATTTACTGCATGGTAATTATAGAAGTTATGGGACGGAATATGTGCGA
TGGGCACGTTCAGATTCGGCTCGAAGTCATTTGCCCATCAAGTTTAGAAA
AGGACCTAAGCCAGGTAAAGAATATTCTTCTTATATTGAATTGTATTTCT
ATACCGCATAGAATGAAAAAATTTATTTGTCAAGTAGATTTACCGGGTTT
TTAATAGTCTACTTTGTTTATTTGTTCCGTAACCTTTCCTGGTTCTTATT
GATTTTTTTACATTTCCTGATTCGTTCCTTCCTTCCTTCCTTCCTTCATT
TATTCATTTCTGTATTTATTCTTTCCTTCATTCATTTATTCCTTCATTTA
TTCATTCATTAAAAAACAAACATTTTAACGAAAGTAACCTCATTCTTCAC
CCTCTCTTCCCAGGTAACCATCTTCTCCCAACCATGGGTTATTGTGAAGT
CGAAGAAGCCTCCAAAGACCAGTTAACAGTTCACCATAACAGCTATGTAT
TCCTATGTGAAATCTCCACAAATATCCTATACCAATACGTCTTGGTAGTC
CTCTGGTTCCTCTTCATCATCAGCATATGTATCTCCATCATTGGTCTACT
TAGCGCTTTATTCGGACATTTGTTTAAGCTAACCTGTTATAGTCGAAGCT
CACCAAAGAAGACCATCTATCGCGTCATCACTCTCAGAGAAGCTGAATAT
CTGAATTTTATCAAAACTAAGAATATGGTCATGTATGGTGAAGTGCTTAG
GAAGCTGAAACAACAACGATCTGATTTGCAAGGGAAGATTATTGATGGGT
TTGAAACAAGTAATGGATTTGTTTAATAGAATTTTCTAAGAAGGGACTCG
ACGGAAAATAAACAAGAGTAGAGCAGTAGAAAAATGAAGAGATTGGGAAT
AGAAGAATTCTGTAGTAATTGACGAGCCAACCACGCACACACACACACTT
TGATAATAGGAAGTTGAAGGTATATGCGAGGAAGAAATTAGGACACTTCC
AGGAGTAAGCAAGAACACCACCAGGTGGGATCAAGGACACCTCCAGGTAT
AAGCCTGGACACCTCCAGGTGGAGGCCTGTTTACATTCAGGAGGAAATAG
AACACCTCCGTGAGGAAGCTATGATATCGTCTGGAGGAAGCTATGAAGCC
CTCTGGAGATAACCAGTACACCTCCTGGGGAAACCAGAAGGAGCCAGAAG
GAAGCACTCGATCATACACCCTGATACATATACATACATTTCGTTGTGAA
CACCTTTTAGAAGATAAAAAGATAGCAATTTCACCAAATAAAGACATAAA
ATTATACGACTGGCAAACTCGAGAACCATTGTAGAAAACAAGTTGTAGAA
ATGCATTTTTAAAACTTCTATATTAGAAGGTTGACAATATATAATGATGG
TGCAAGGTAGAAAAATACAAGAGAACGCTTTCGAGTTAAGTTTTGCTAAA
TGATAAACTCATGGATGAATAAATTTTGTATGAAATATTAATTTTCTTTT
TTTAGCCATGTTCATCAGGAATGGGTTAGAAGTGAAAGCGTCAGCTCCAA
ACGCAGTCAATGGTTCGATTCGATTGTGCTGATGAAAAATAACGTACAGG
CTCTGGTGACGCTTTTCGAAGAAAGAAGGGTCACTATTTAAAGGCGGGCA
CGGGGGGATGTTGCCACCAAATCTTTTGGGATCACATCTGTATTTAAGAT
GTGTGTACACTTGTACCTGAATTTTTGGAAATTTATACAGAAAGATGTCC
TAAATTTATTGATTTAAAGTTTATGAATTAAATCTTTTTTGTACACTGCT
GCATCGATATCTTCAAAGGGAAGTTATTTCTTTTGGACCCATGACTATTA
ATGAATGGCAGTGTCTGCACTTAAATATTTGATATTAATTGGAGACATTT
GTGTACACATTTTTATAAGCAATCTAGATTTTGGCCTCAGGGTGGGAGTT
GCTTAAAATTCTATCCCAATTTTTGAAGGACTTTCCATAACCAGTTCTCA
TATTATCATCAGTTACTGTATCACACTTTCACTCGTACGTTCAGAGCCTG
ATGGCTCGGATAAGATGACGAAAAATTTGAAGATATATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069174-exon-scaffold_495-1575043694:183596..184024 | TCONS_00069174-exon-scaffold_495-1575043694:183596..184024 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1575043694:182919..183152 | TCONS_00069174-exon-scaffold_495-1575043694:182919..183152 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1575043694:181961..182265 | TCONS_00069174-exon-scaffold_495-1575043694:181961..182265 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1575043694:179982..181661 | TCONS_00069174-exon-scaffold_495-1575043694:179982..181661 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1510915933:183596..184024 | TCONS_00069174-exon-scaffold_495-1510915933:183596..184024 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1510915933:182919..183152 | TCONS_00069174-exon-scaffold_495-1510915933:182919..183152 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1510915933:181961..182265 | TCONS_00069174-exon-scaffold_495-1510915933:181961..182265 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1510915933:179982..181661 | TCONS_00069174-exon-scaffold_495-1510915933:179982..181661 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1491911889:183596..184024 | TCONS_00069174-exon-scaffold_495-1491911889:183596..184024 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1491911889:182919..183152 | TCONS_00069174-exon-scaffold_495-1491911889:182919..183152 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1491911889:181961..182265 | TCONS_00069174-exon-scaffold_495-1491911889:181961..182265 | Clytia hemisphaerica | exon |
| TCONS_00069174-exon-scaffold_495-1491911889:179982..181661 | TCONS_00069174-exon-scaffold_495-1491911889:179982..181661 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_495 | supercontig | scaffold_495:179982..184024 - |
Blast
The following BLAST results are available for this feature:
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