TCONS_00069183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069183
Unique NameTCONS_00069183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069183 ID=TCONS_00069183|Name=TCONS_00069183|organism=Clytia hemisphaerica|type=transcript|length=1601bp
CTAATTATCGAACGGAGGAAGTGACCCAACTCTTTTTTTTCAGACAAATT
TACGTCAGAAATCTCTTCTATAAAGACTGAATGTACATAAGCTCTTGGGC
TGACAGCATTGGCCGGGCACACGTCGGCTCTTTGCATGGACACTTTACCA
GGATGTGATGTGACCAAATGTGGAGGACTTACTGGAAAGGTGTGGTGTAA
GAAAACATGCGGAACTTGTGTTTCAACAACTCAAGCCCCAACCGGACCAG
cCACAAACGCACCAAATTATAAAGGCTGTGGTTACCAAGGATACCAGAGT
CGTGTAGTTGGAGGCACCAAATCCAAACAATCACAATGGCCATGGCAAGC
ATCGTTGAGTATCGGTGGTAAATTCAGCTGTGGTGCAACGTTGATTGCTC
CACAATGGGTGGTTACTGCTGGTCATTGCATCCAAGCATACAGGAGAGCC
AACCAATATTCCTTCAGATTCGGCGATTTGGACAGATACGATATCAGTGG
TAAAGAGTATTACGCTAGAGGAGAAAAGCTTTTCAAACACCCTTCATACA
ACACACCATTACGAAAGGACAACGATATCGCATTAATAAAGCTGGATCGT
CCAGTTCCTTTTTCCTCTGATATCACACCCGCCTGTCTACCACGCACTGG
CGAACAAATCCCTGTTGGAAAGAAATGCTTTGTCTCAGGTTGGGGAAAGA
CGGATTACGCTGGTCAAGCAGTATACGATCTCCAACACGCCCCATTACAA
ATCATCAGCAACAAACAATGTTGTGAAACAAACTGTGATCGATGGACACC
AAACATCCCTAACAAAATGGTGTGCGCAAAAAATCGTGAACAAGCAACTT
CAGCTTGTCATGGTGATTCTGGAGGGCCATTTGTTTGTCAAGGCAGCAAC
GGCCGTTGGTTTTTACAAGGTGTGGTCAGCTGGGGATCGGGTCGATGTAA
TGCGTTCCAAAAGGCGACCGTCTTTACACGTGTTACAGAATACATGACTT
GGATCAACGAAAccatcaaaaataattaatcaatttttagtaattttgtt
gttgttagtTTTTGCTCTAAAATGTAGAAAATATGGTATCGTTTGGAAAA
GAAATACGGTGACTCTAAATTTACCACTAAAAGACTAAACCCAATTTTTT
GTTCGAAGTGCAATGCAATTCTTAAGTCATCACATTTTTTGCCTGAGAAT
GGTTTCTAGCCTTTGGGTATGTTTCTTCATTGCTTTTATTGGATCCAGTC
AGAAATAATGTATCatgatgttttttcttaaactGGAGTTCCTACGGTAT
AATAGCGTTTGTCACTTATTCATGTATCtatttactttctttttttatta
aaaatatccaacatataaaaaaattatcaaaattgaaaaaaaagtagtag
aaaaatataaacaactaTTTAGGTTCCATCATAtactaaaaatatttcaa
actgaTCTAAAACATATTTTGGAAGGATTCCTCCTTTACTCTTTCTGAGA
TTGGATATCCATTGTTGAATAGGTTGTATACAGAGCTGTGGGTGATAATG
CAAAGCTTCCTTCAAAACTGTCGCTGCTGCATATTGAACCTTTTCGTGTA
C
Run BLAST on NCBI

transcript from alignment at scaffold_496:162578..167776+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069183 ID=TCONS_00069183|Name=TCONS_00069183|organism=Clytia hemisphaerica|type=transcript|length=5199bp|location=Sequence derived from alignment at scaffold_496:162578..167776+ (Clytia hemisphaerica)
CTAATTATCGAACGGAGGAAGTGACCCAACTCTTTTTTTTCAGACAAATT
TACGTCAGAAATCTCTTCTATAAAGACTGAATGTACATAAGGTACTTTTT
TACGAGGTAAAATTTGCTCTGGATCAAATTTTTGTAGCATTAAACAAACA
CAagagattttaataaaatattgataataattttccAGGTGCTTTATAAG
TAATTCtaaacaaaacattaattttacGAAAAATTCGATGGAAAATTCGA
GTCAGGGGTTCAAACATCCATTTGAAGTTCGGAGAAGAACgtcttgaaaa
atataaaaggaGAGAAGCCAAGGGGTCAGCAATCattaaaactcgaaaaa
aagttttgattatttctTTTGACTGaagaattgaaatgaaattgaatttc
atCACCCTCCTTGGTAAGTACATTGAAGTCTCTATGATTCGTACTCGAAT
GTTTAATTAACTCGAACGAGTTTTCTGGTCCCTCCCAGTTGAAATTGCTT
TTTAAACCTTACTCCAAAACTCGAAATCTCATTAATCTACTTAACTGCGT
TTCCATGCGCgtgtcgagttatagagactcttATAGTTAGATTTAAGAAA
GACCGTAAAAATTTAGTGTCGTGAACAGCTAGAGGGTTGAAATGCGCAAA
AACaggattcaaatttttcaatttcaagtggAATCTTTGACTGCCGTGTG
GAACGTCTAAGTACAAAATCTATAATGGTTATCATATTGTACCTGTAATC
TGCAACGAAAACTGATATCATCTCGATATAATTATTGTATAACTATGTTA
CTGTAATACGTAGATTATGAATGACTACAGTCTCATATATACCTGGTGAT
AACTCCAATCAATAAATCTCTTTTACTCTCTAGCTCTTGGGCTGACAGCA
TTGGCCGGGCACACGTCGGCTCTTTGCATGGACACTTTACCAGGATGTGA
TGTGACCAAATGTGGAGGACTTACTGGAAAGGTGTGGTGTAAGAAAACAT
GCGGAACTTGTGGTATGTGTTGTTGCTCTCTTTCCCCCTTTTTAAAAGAC
ATCGTTTAACCATCTTCTAACATTTGCTTTCAcagcatttttcaacaaaa
gacatgacaattttctttcctttcccCACCTTGGACGAGTAAAAAATTCG
AAGAATTCTTTtatttaccttatcggccctttttacaccggaccttattg
gcgttatttttgggctcgtggcgtaataagggccggcgtaaaaagggccg
NGCACAAAACCCCATTGAGTAGGGCAAAAAAACTTCTAATTGAACCAAAT
CACCCTCTCTATAATTTTAGTTTCAACAACTCAAGCCCCAACCGGACCAG
GTAGGTTTGATGAAGATTTAAATCaactaatttatcaatttttctaCGAT
TTGTACTTAAGATTCTTTTTGCTTTTCGAAATTAGTAATTAATTTGAATG
AACAAGTGGTCAAGTAGTTTATTGTGTTCTATCATAACCCCCGACACTGC
AGTTAAGTTGATCACCGTAGGTGCGACCCTTAAGGGTACGCTTTTCAGGC
TTCCTAAAGTACACGGTAAGGgttgttgaatttttttcaagaaaatatac
CGTTAGGGTAGATTTTTTGCATATTTACTACTAGAAGGGTCAAATTTTGA
GACCCTAATTTTTGTTCACATGAAGTTTTCAAGTCGCCCTCCCCATAAAG
CTCGCTTACGTGCTCtaattgtttctttttaattttacagcCACAAACGC
ACCAAATTATAAAGGTAGGTTTTTATTTCATCAAACTAAAAATAGTGTCC
AAAGAGTCAGGATAGTAGGCCATAAGCACTCGTACCTGATAAACAAGGCG
TTGGTTCTGAATAGAGACTAAACAAACTCGTCCCAGTGTATACCAggttt
tatttacgttactgaatgacgccagagaatatatTATGTGACGccatcag
taagcatcaaaaagttGATAATACGNTGTTCTGAATAGAGACTAAACAAA
CTCGTCCCAGTGTATACCAGGcattatttacgttactgaatgacgccaga
gaatatatTATGTGACGccatcagtaagcatcaaaaagttgataatacgc
agggataCAAAGTTNCCCCGACACTGCAGTTAAGTTGATCACCGTAGGTG
CGACCCTTAAGGGTACGCTTTTCAGGCTTCCTAAAGTACACGGTAAgggt
tgttgattttttttcaagaaaatacacCGTTAGGGTAGATTTTTTGCATA
TTTACTACTAGAAGGGTCAAATTTTGAGACCCTAATTTTTGTTCACATGA
AGTTTTCAAGTCGCCCTCCCCATAAAGCTCGCTTACGTGCTCtaattgtt
tctttttaattttacagcCACAAACGCACCAAATTATAAAGGTAGGTTTT
TATTTCATCAAACTAAAAATAGTGTCCAAAGAGTCAGGATAGTAGGCCAT
AAGCACTCGTACCTGATAAACAAGGCGTTGGTTCTGAATAGAGACTAAAC
AAACTCGTCCCAGTGTATACCAggttttatttacgttactgaatgacgcc
agagaatatatTATGTGACGccatcagtaagcatcaaaaagttgataata
cgcagggataCAAAGTTAGACTAAATAAAATCTGgctattttaaaaacaa
aatgagtgGGTGTTAGGAGAAAAAATACAGCTGATGCTCTGCTctttaat
tcgacgttctactattcgatatgctcctttattcgataaaaatccaATTC
CTTTTAAACATCGaactagagagcgtcaactgtattaacCGACATGGGGT
ACGACAATTTGTGTTCCCGGAGTACTGGTCTTTTCTGAGTGCTGTGAATA
cacataaaatgaaaattgaatgagAATCCAACTTACAGTCATGTTGCTAT
ATTTACAACCATAGGCTGTGGTTACCAAGGATACCAGAGTCGTGTAGTTG
GAGGCACCAAATCCAAACAATCACAATGGCCATGGCAAGCATCGTTGAGT
ATCGGTGGTAAATTCAGCTGTGGTGCAACGTTGATTGCTCCACAATGGGT
GGTTACTGCTGGTCATTGCATCCAAGCATACAGGAGAGCCAACCAATATT
CCTTCAGATTCGGTGAGTGGCTATATAATAAATATACATGGAGTcttatt
aaagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcg
gatacaaaatcaaaacaaatatcacatgtcaaaataaaaaatcaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcacgtgattttaattgttctttttaatgacacgtggttcgcgcaa
tgtttacattttactacttttatgtccctttaaattaGTACTGTTTAGCG
ATACCGTGATTTTCACGTTTGAATACTCCAAAGCCGTAACTGAATGcaca
atgttttctttaaaggAACTTGCAAAATTAGAGCCTGAGATTTTGCAGAG
AAAATACAGCTATCGATCTGAGGAGGAAAATAAacagttgcaaattaaaa
gatttctttattTTACATAACTCTATACTCTTTTTCCAATCTTTCACATC
AGGCGATTTGGACAGATACGATATCAGTGGTAAAGAGTATTACGCTAGAG
GAGAAAAGCTTTTCAAACACCCTTCATACAACACACCATTACGAAAGGAC
AACGATATCGCATTAATAAAGCTGGATCGTCCAGTTCCTTTTTCCTCTGA
TATCACACCCGCCTGTCTACCACGCACTGGCGAACAAATCCCTGTTGGAA
AGAAATGCTTTGTCTCAGGTAAACAATCAAGAAACCAAAAGAGACCAGCT
TaatttactttttgaaatttctgacaAATTAACCAAACTATGGACAATAA
AGTTCAGTTAAGACTGAAGAAAGTTGATTTGtcattttcagagaaaaaat
tgatttgtcattttcagagaaaaaattcATAGGTGGATGAAAACTGCCAA
AAGTAAAATGTCCAGGGTCCAATGTTGATTTATTGTCTTGGGTGTTTAGA
GAGTAAATAATCAAAATGTCCAGTGATAGTTCATTGATAAAAATGATCTA
TCGTTCAACCCCATGAGAAAGTTTTCTTAAAGAGAAATCCTAgctaattt
acaaaaaattataGTCATACGATTTGTACCTTACAGGTTGGGGAAAGACG
GATTACGCTGGTCAAGCAGTATACGATCTCCAACACGCCCCATTACAAAT
CATCAGCAACAAACAATGTTGTGAAACAAACTGTGATCGATGGACACCAA
ACATCCCTAACAAAATGGTGTGCGCAAAAAATCGTGAACAAGCAACTTCA
GCTTGTCATGGTGATTCTGGAGGGCCATTTGTTTGTCAAGGCAGCAACGG
CCGTTGGTTTTTACAAGGTGTGGTCAGCTGGGGATCGGGTCGATGTAATG
CGTTCCAAAAGGCGACCGTCTTTACACGTGTTACAGAATACATGACTTGG
ATCAACGAAAccatcaaaaataattaatcaatttttagtaattttgttgt
tgttagtTTTTGCTCTAAAATGTAGAAAATATGGTATCGTTTGGAAAAGA
AATACGGTGACTCTAAATTTACCACTAAAAGACTAAACCCAATTTTTTGT
TCGAAGTGCAATGCAATTCTTAAGTCATCACATTTTTTGCCTGAGAATGG
TTTCTAGCCTTTGGGTATGTTTCTTCATTGCTTTTATTGGATCCAGTCAG
AAATAATGTATCatgatgttttttcttaaactGGAGTTCCTACGGTATAA
TAGCGTTTGTCACTTATTCATGTATCtatttactttctttttttattaaa
aatatccaacatataaaaaaattatcaaaattgaaaaaaaagtagtagaa
aaatataaacaactaTTTAGGTTCCATCATAtactaaaaatatttcaaac
tgaTCTAAAACATATTTTGGAAGGATTCCTCCTTTACTCTTTCTGAGATT
GGATATCCATTGTTGAATAGGTTGTATACAGAGCTGTGGGTGATAATGCA
AAGCTTCCTTCAAAACTGTCGCTGCTGCATATTGAACCTTTTCGTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043124XLOC_043124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069183-exon-scaffold_496-1491911889:162578..162668TCONS_00069183-exon-scaffold_496-1491911889:162578..162668Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:162578..162668TCONS_00069183-exon-scaffold_496-1510915933:162578..162668Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:162578..162668TCONS_00069183-exon-scaffold_496-1575043694:162578..162668Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1491911889:163461..163589TCONS_00069183-exon-scaffold_496-1491911889:163461..163589Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:163461..163589TCONS_00069183-exon-scaffold_496-1510915933:163461..163589Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:163461..163589TCONS_00069183-exon-scaffold_496-1575043694:163461..163589Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1491911889:163898..163927TCONS_00069183-exon-scaffold_496-1491911889:163898..163927Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:163898..163927TCONS_00069183-exon-scaffold_496-1510915933:163898..163927Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:163898..163927TCONS_00069183-exon-scaffold_496-1575043694:163898..163927Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1491911889:164318..164341TCONS_00069183-exon-scaffold_496-1491911889:164318..164341Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:164318..164341TCONS_00069183-exon-scaffold_496-1510915933:164318..164341Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:164318..164341TCONS_00069183-exon-scaffold_496-1575043694:164318..164341Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1491911889:165492..165689TCONS_00069183-exon-scaffold_496-1491911889:165492..165689Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:165492..165689TCONS_00069183-exon-scaffold_496-1510915933:165492..165689Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:165492..165689TCONS_00069183-exon-scaffold_496-1575043694:165492..165689Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1491911889:166280..166495TCONS_00069183-exon-scaffold_496-1491911889:166280..166495Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:166280..166495TCONS_00069183-exon-scaffold_496-1510915933:166280..166495Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:166280..166495TCONS_00069183-exon-scaffold_496-1575043694:166280..166495Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1491911889:166864..167776TCONS_00069183-exon-scaffold_496-1491911889:166864..167776Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1510915933:166864..167776TCONS_00069183-exon-scaffold_496-1510915933:166864..167776Clytia hemisphaericaexon
TCONS_00069183-exon-scaffold_496-1575043694:166864..167776TCONS_00069183-exon-scaffold_496-1575043694:166864..167776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:162578..167776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.435918	0.609102	0.0828626	0.0965206	0	0	0	0.367517	0.674478	0.903829	0	0	0.286679	0.139089	0.000263106	0.101432	0.157219	0.110571	0.237589	0.267722	0.308037	0.0723803	94.564	51.7195	76.2792	117.445	0	0	0	0.636786
Blast
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BLAST of TCONS_00069183 vs. Swiss-Prot (Human)
Match: TMPS3 (Transmembrane protease serine 3 OS=Homo sapiens GN=TMPRSS3 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.828e-49
Identity = 104/251 (41.43%), Postives = 136/251 (54.18%), Query Frame = 1 
Query:  274 GCGYQ-GYQSRVVGGTKSKQSQWPWQASLSIGGKFSCGATLIAPQWVVTAGHCIQAYRRANQYSFRFGDLDRYDISGKEYYARGEKLFKHPSYNTPLRKDNDIALIKLDRPVPFSSDITPACLPRTGEQIPVGKKCFVSGWGKT-DYAGQAVYDLQHAPLQIISNKQCCETNCDRWTPNIPNKMVCAKNREQATSACHGDSGGPFVCQGSNGRWFLQGVVSWGSGRCNAFQKATVFTRVTEYMTWINETIK 1020
             CG++ GY SR+VGG  S  SQWPWQASL   G   CG ++I P W++TA HC+        ++ + G +   D     +    EK+  H  Y  P R  NDIAL+KL  P+ F+  I P CLP + E  P GK C+ SGWG T D AG A   L HA + +ISNK C   + D +   I   M+CA        +C GDSGGP VCQ     W L G  S+G G C    K  V+TRVT ++ WI+E ++
Sbjct:  206 ACGHRRGYSSRIVGGNMSLLSQWPWQASLQFQGYHLCGGSVITPLWIITAAHCVYDLYLPKSWTIQVGLVSLLDNPAPSHLV--EKIVYHSKYK-PKRLGNDIALMKLAGPLTFNEMIQPVCLPNSEENFPDGKVCWTSGWGATEDGAGDASPVLNHAAVPLISNKIC--NHRDVYGGIISPSMLCAGYLTGGVDSCQGDSGGPLVCQ-ERRLWKLVGATSFGIG-CAEVNKPGVYTRVTSFLDWIHEQME 449
The following BLAST results are available for this feature:
BLAST of TCONS_00069183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMPS32.828e-4941.43Transmembrane protease serine 3 OS=Homo sapiens GN... [more]
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