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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069194 ID=TCONS_00069194|Name=TCONS_00069194|organism=Clytia hemisphaerica|type=transcript|length=5860bpRun BLAST on NCBI transcript from alignment at scaffold_496:601078..615361+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069194 ID=TCONS_00069194|Name=TCONS_00069194|organism=Clytia hemisphaerica|type=transcript|length=14284bp|location=Sequence derived from alignment at scaffold_496:601078..615361+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069194 vs. Swiss-Prot (Human)
Match: MUC5A (Mucin-5AC OS=Homo sapiens GN=MUC5AC PE=1 SV=4) HSP 1 Score: 432.18 bits (1110), Expect = 2.960e-122 Identity = 329/1226 (26.84%), Postives = 539/1226 (43.96%), Query Frame = 2
Query: 1826 KTCYVRGKVHYNTFDGLNYNLLTGCSYYLV-HDSDPSSKFDIIVHND-----PTINYNTTVKRRVTVVADGKTVELGQKIGDMFIVQIKDGNGDKKMVQLPYEGVPRISEAGRYVMVVTAEGAVIKFDGKEDISITLPETFSPDSKHNHDISGLCGNMDG-DISTDLIDYTHTKRATPQKFAALYQTDAGTCKEKLKMSDLFYNPQDNAELVYQYAETKCDIINTDAFKPCHSKIPPDQYKIICMQDMVNCNFDLRGDECLCNALSLYARVC-HNYGVEVSWRKPDLCPITCKSNMQYYDCGSACPKTCDNMMSMTKCPSDCVDGCNCPPDMYFDKEYER-CVKREQCSCYWDGVHYAHLSLRRGDVEDCTCNGGLWKCEKKAYAATCTVYGDPHIKTFDGKRYDMFGKCSYVLVDHCHYGNSPKEFEIITKNTDCKNDDLGISCIRNILVNLTSINTRVALGSSLKNGRRLPSVIINGEDQKFYLNKDLLXXXXXXXXXXXHY--RRKDMRIQWTGE-----NIYISVSSDYQNQTCGLCGTYNFNKEDDFHTRSDATETRVIPFTESWIYSDKDVSQDPSVCHTTGWDTTEAPCNVFRQYESYAESSCSLIKDPEGPFKACHSVVPPSSHYKICKDDGCKCQK---CYCNIVAAYAKACMDKGVPIDGWRERTEDCMLQCSGNKVLRQCNTDKTGH--NLRCPATCQDFSMNSTETCQSRGCIEGCYCPDGFYENNKHECVAKQECPCTHNGMLYSFGQTRKEDCNTCTCMGGEFVCTKDNCEEQCESRGLVY------------SACGKTCDNFMLNDADLRCTSGCFCKEGKVLHENGTCVDPTTQCQCKEADRYFNQGEISPSDCSKQCNGDRTWKTISNEHAKPQYDCAAWGQMHYRTFDGRMYKFDGGMCEYLLMSD--CRSDPSKDYCDINSASINVKISNKRCQNSYEAYMCKQVAIDLQTPEGKVEIVMMQEEVTVKRGITVMKFEKGSYPQPQTAVMNGVEVFKVGVYLIVRAYLLDYTVKYDQQNRVYVVPGKKHVSSGIFSGLCGDFNGKTEDDFRRLDNAMADNALQFGKSWADSSSACE-LTETDTCQQNPDRQAWAQKGCNVIRTGNFTACHDTVDPSTYIESCQQETCLCKQGGDCACFCSALAAYVQECNRHGIPIYWRREGLCRLDC--CDPCGHSYGYYKDNMIP--KTCDDQKQTCDSNHRCCRG 5383
+ C G HY TFDG + C+Y H F+I + PT++ RV + DG ++L + G + + NG ++ GV I ++ Y V G V+ ++ + + + L D+K+ + GLCG+ +G + ++L+ +H + TP +F L + D T + D P N + E ++++ F C + + Y C QD+ C D C+C+ L+ Y+R C H G+ WR PD CP C +NMQY++C S C TC N C CV GC CP D + CV +C+C ++G YA + D +CTC+GG W C++ TC+V G H TFDGK+Y + G CSYVL C F ++ + C D +C++++ ++L T V + +S + V +N + Y + V+ + + + +Q + +++ ++ + QTCGLCG +N + DDF T S E F ++ K + P++ ++ E PC++ + E YA+ CS + D +GPF CH+ V P ++Y C D C C++ C C +++Y AC KGV + GWR+ C+ K + C T H C TC+ S ++GC CP G + ++ +CV CPC H G + G++ + CTC G+ C + +V+ + C K+C + +C GC C +G V G C+ C C + + G+ C+ R W+ + CA +G HY TFDG+ Y F+G CEY L+ + D ++D + + ++ + C + + ++ +L+ GKVE++ E V I M G+YL+V + + +D++ +++ + G GLCG+F+ +DF ++ + L+FG SW S S + L D C NP R++WAQK C+++ F ACH V+P+ Y E+C + C C GGDC CFC+A+AAY Q C+ G+ + WR +C L C +P G +Y+ +P +TC + + C + R G
Sbjct: 79 RVCSTWGSFHYKTFDGDVFRFPGLCNYVFSEHCGAAYEDFNIQLRRSQESAAPTLS-------RVLMKVDGVVIQLTK--GSVLV------NGHPVLLPFSQSGV-LIQQSSSYTKVEARLGLVLMWNHDDSLLLEL------DTKYANKTCGLCGDFNGMPVVSELL--SHNTKLTPMEFGNLQKMDDPT----DQCQDPVPEPPRNCSTGFGICE---ELLHGQLFSGCVALVDVGSYLEACRQDLCFCE-DTDLLSCVCHTLAEYSRQCTHAGGLPQDWRGPDFCPQKCPNNMQYHECRSPCADTCSNQEHSRACEDHCVAGCFCPEGTVLDDIGQTGCVPVSKCACVYNGAAYAPGATYSTDCTNCTCSGGRWSCQEVPCPGTCSVLGGAHFSTFDGKQYTVHGDCSYVLTKPCDS----SAFTVLAELRRCGLTD-SETCLKSVTLSLDGAQTVVVIKASGE-------VFLN----QIYTQLPISAANVTIFRPSTFFIIAQTSLGLQLNLQLVPTMQLFMQLAPKLRGQTCGLCGNFNSIQADDFRTLSGVVEATAAAFFNTF----KTQAACPNI-----RNSFEDPCSLSVENEKYAQHWCSQLTDADGPFGRCHAAVKPGTYYSNCMFDTCNCERSEDCLCAALSSYVHACAAKGVQLGGWRDGV------CT--KPMTTCPKSMTYHYHVSTCQPTCRSLSEGDITCSVGFIPVDGCICPKGTFLDDTGKCVQASNCPCYHRGSMIPNGESVHDSGAICTCTHGKLSCIGGQAPAPVCAAPMVFFDCRNATPGDTGAGCQKSCHTLDMTCYSPQCVPGCVCPDGLVADGEGGCIT-AEDCPCVHNEASYRAGQTIRVGCNTCTCDSRMWRCTDDPCLA---TCAVYGDGHYLTFDGQSYSFNGD-CEYTLVQNHCGGKDSTQDSFRVVTENVPCGTTGTTCSKAIKIFL---GGFELKLSHGKVEVIGTDESQEVPYTIRQM-----------------------GIYLVVDTDI-GLVLLWDKKTSIFINLSPEF--KGRVCGLCGNFDDIAVNDFATRSRSVVGDVLEFGNSWKLSPSCPDALAPKDPCTANPFRKSWAQKQCSILHGPTFAACHAHVEPARYYEACVNDACACDSGGDCECFCTAVAAYAQACHEVGLCVSWRTPSICPLFCDYYNPEGQCEWHYQPCGVPCLRTCRNPRGDCLRDVRGLEG 1205 HSP 2 Score: 160.999 bits (406), Expect = 4.690e-39 Identity = 149/511 (29.16%), Postives = 223/511 (43.64%), Query Frame = 2
Query: 2675 CKSNMQYYDC--------GSACPKTCDNMMSMTKCPSDCVDGCNCPPDMYFDKEYERCVKREQCSCYWDGVHYAHLSLRRGDVEDCTCNGGLWKCEKKAYAATCTVYGDPHIKTFDGKRYDMFGKCSYVLV-DHCHYGNSPKE-FEIITKNTDCKNDDLGISCIRNILVNLTSINTRVALGSSLKNG----RRLPSVIINGEDQKFYLNKDLLXXXXXXXXXXXHYRRKDMRIQWTGE-NIYISVSSDYQNQTCGLCGTYNFNKEDDFHTRSDATETRVIPFTESWIYS----DKDVSQDPSVCHTTGWDTTEAPCNVFRQYESYAESSCSLIKDPEGPFKACHSVVPPSSHYKICKDDGCKCQ-----KCYCNIVAAYAKACMDKGVPIDGWRERTEDCMLQCSGNKVLRQCNTDKTGHNLRCPATCQDFSMNSTETCQSRGCIEGCY--CPD--GFYENNKHECVAKQECP-----CTHNGMLYSFGQTRKED--CNTCTCMGGEFVCT 4102
C + M ++DC G+ C K+C + + MT CV GC CP + D E C+ E C C + Y R CTC+ +W+C ATC VYGD H TFDG+ Y G C Y LV +HC +S ++ F ++T+N C G +C + I + L +++ G G + +P I YL D + + W + +I+I++S +++ + CGLCG ++ +DF TRS + V+ F SW S D +DP N FR+ S+A+ CS++ P F ACH+ V P+ +Y+ C +D C C +C+C VAAYA+AC + G+ + WR + C L C QC + C TC++ + RG +EGCY CP ++ +K +CVA P C +G Y G D C +C C CT
Sbjct: 802 CAAPMVFFDCRNATPGDTGAGCQKSC-HTLDMTCYSPQCVPGCVCPDGLVADGE-GGCITAEDCPCVHNEASYRAGQTIRVGCNTCTCDSRMWRCTDDPCLATCAVYGDGHYLTFDGQSYSFNGDCEYTLVQNHCGGKDSTQDSFRVVTENVPCGTT--GTTCSKAIKIFLGGFELKLSHGKVEVIGTDESQEVPYTI---RQMGIYLVVDT---------------DIGLVLLWDKKTSIFINLSPEFKGRVCGLCGNFDDIAVNDFATRSRSVVGDVLEFGNSWKLSPSCPDALAPKDPCT------------ANPFRK--SWAQKQCSILHGPT--FAACHAHVEPARYYEACVNDACACDSGGDCECFCTAVAAYAQACHEVGLCVS-WRTPS-ICPLFCDYYNPEGQCEWHYQPCGVPCLRTCRNPRGDCLR--DVRG-LEGCYPKCPPEAPIFDEDKMQCVATCPTPPLPPRCHVHGKSYRPGAVVPSDKNCQSCLCTERGVECT 1269 HSP 3 Score: 128.257 bits (321), Expect = 3.564e-29 Identity = 126/463 (27.21%), Postives = 199/463 (42.98%), Query Frame = 2
Query: 4103 KDNCEEQCESRGLVY---SACGKTCDNFMLNDA-DLRCTSGCFCKEGKVLHENGT--CVDPTTQCQCKEADRYFNQGEISPSDCSK-QCNGDRTWKTISNEHAKPQYDCAAWGQMHYRTFDGRMYKFDGGMCEYLLMSDCRSDPSKDYCDINSASINVKISNKRCQNSYEAYMCKQVAIDLQTPEGKVEIVMMQEEVTVKRGITVMKFEKGSYPQPQTAVMNGVEVFKVGVYLIVRAYLLDYTVKYDQQNRVYVVPGKKHVSSGIFSGLCGDFNGKTEDDFRRLDNAMADNALQFGKSWADSSSACELTET--DTCQQNPDRQAWAQKGCNVI--RTGNFTACHDTVDPSTYIESCQQETCLCKQGGDCACFCSALAAYVQECNRHGIPIYWRREGLCR--LDCCDPCGHSYGYYKDNMIPKTCDDQKQTCDSNHRCCRGPV-VEGCGCPNGTY-DDGNKCQE 5446
D C ++C + + S C TC N + A + C +GCFC EG VL + G CV P ++C C + G +DC+ C+G R W S + C+ G H+ TFDG+ Y G C Y+L C +S++ V +RC + K V + L +G +V+++ V F Y Q + N V +F+ + I+ L + + + G GLCG+FN DDFR L + A F ++ ++ + + D C + + + +AQ C+ + G F CH V P TY +C +TC C++ D C C+AL++YV C G+ + R+G+C + C P +Y Y+ P TC + + + C G + V+GC CP GT+ DD KC +
Sbjct: 331 PDFCPQKCPNNMQYHECRSPCADTCSNQEHSRACEDHCVAGCFCPEGTVLDDIGQTGCV-PVSKCACVYNGAAYAPGATYSTDCTNCTCSGGR-W---SCQEVPCPGTCSVLGGAHFSTFDGKQYTVHGD-CSYVLTKPC-----------DSSAFTVLAELRRCGLTDSETCLKSVTLSL---DGAQTVVVIKASGEV--------FLNQIYTQLPISAAN-VTIFRPSTFFIIAQTSLGLQLNLQLVPTMQLFMQLAPKLRGQTCGLCGNFNSIQADDFRTLSGVVEATAAAFFNTFKTQAACPNIRNSFEDPCSLSVENEKYAQHWCSQLTDADGPFGRCHAAVKPGTYYSNCMFDTCNCERSED--CLCAALSSYVHACAAKGVQLGGWRDGVCTKPMTTC-PKSMTYHYHVSTCQP-TC---RSLSEGDITCSVGFIPVDGCICPKGTFLDDTGKCVQ 757 HSP 4 Score: 127.872 bits (320), Expect = 4.945e-29 Identity = 118/411 (28.71%), Postives = 171/411 (41.61%), Query Frame = 2
Query: 1817 PLNKTCYVRGKVHYNTFDGLNYNLLTGCSYYLVHDS-----DPSSKFDIIVHNDPTINYNTTVKRRVTVVADGKTVELGQKIGDMFIVQIKDGNGDKKMVQLPYEGVPRISEAGRYVMVVTAEGAVIKFDGKEDISITLPETFSPDSKHNHDISGLCGNMDGDISTDLIDYTHTKRATPQKFAALYQTDAGTCKEKLKMSDLFYNPQDNAELVYQYAETKCDIINTDAFKPCHSKIPPDQYKIICMQDMVNCNFDLRGD-ECLCNALSLYARVCHNYGVEVSWRKPDLCPITC-------KSNMQYYDCGSACPKTCDNMMSMTKCPSDC--VDGC--NCPPDM-YFDKEYERCVKREQCSCYWDGVHYAHLSLRRGDV-------EDCTCNGGLWKCEKKAYAATCTVYG 2974
P TC V G HY TFDG +Y+ C Y LV + F ++ N P TT + + + G EL G + ++ G + ++PY I + G Y++V T G V+ +D K I I L SP+ K + GLCGN D D + + +F ++ +C + L D P +A+ +C I++ F CH+ + P +Y C+ D C D GD EC C A++ YA+ CH G+ VSWR P +CP+ C + Y CG C +TC N C D ++GC CPP+ FD++ +CV H S R G V + C C +C KA A CT G
Sbjct: 898 PCLATCAVYGDGHYLTFDGQSYSFNGDCEYTLVQNHCGGKDSTQDSFRVVTENVPCGTTGTTCSKAIKIFLGG--FELKLSHGKVEVI------GTDESQEVPYT----IRQMGIYLVVDTDIGLVLLWDKKTSIFINL----SPEFKGR--VCGLCGNFDDIAVNDFATRSRSVVGDVLEFGNSWKLSP-SCPDALAPKD----PCTANPFRKSWAQKQCSILHGPTFAACHAHVEPARYYEACVNDACAC--DSGGDCECFCTAVAAYAQACHEVGLCVSWRTPSICPLFCDYYNPEGQCEWHYQPCGVPCLRTCRNPRG--DCLRDVRGLEGCYPKCPPEAPIFDEDKMQCVATCPTPPLPPRCHVHGKSYRPGAVVPSDKNCQSCLCTERGVECTYKAEACVCTYNG 1281 HSP 5 Score: 104.76 bits (260), Expect = 4.412e-22 Identity = 109/390 (27.95%), Postives = 166/390 (42.56%), Query Frame = 2
Query: 1814 LPLNKTCYVRGKVHYNTFDGLNYNLLTGCSYYLVHDSDPSSKFDIIVH-NDPTINYNTTVKRRVTVVADG-KTVELGQKIGDMFIVQIKDGNGDKKMVQLPYEG--VPRISEAGRYVMVVTAEGAVIKFDGKEDISITLPETFSPDSKHNHDISGLCGNMDGDISTDLIDYTHTKRATPQKFAALYQTDAGTCKEKLKMSDLFYNPQDNAELVYQYAETKCDIINTDA---FKPCHSKIPPDQYKIICMQDMVNCNFDLRGDECLCNALSLYARVCHNYGVEVSWRKPDLC--PI-TCKSNMQYYDCGSACPKTCDNMM------SMTKCPSDCVDGCNCPPDMYFDKEYERCVKREQCSCYWDGVHYAHLSLRRGDVEDCTCNGGLWKC 2935
+P TC V G H++TFDG Y + CSY L D SS F ++ + + T + VT+ DG +TV + + G++F+ QI QLP V + +++ T+ G + + + + +P K GLCGN + + D + AT F ++T A C + + F +P + +YA+ C + TDA F CH+ + P Y CM D NC R ++CLC ALS Y C GV++ + +C P+ TC +M Y+ S C TC ++ S+ P VDGC CP + D + +CV+ C CY G + CTC G C
Sbjct: 428 VPCPGTCSVLGGAHFSTFDGKQYTVHGDCSYVLTKPCD-SSAFTVLAELRRCGLTDSETCLKSVTLSLDGAQTVVVIKASGEVFLNQI--------YTQLPISAANVTIFRPSTFFIIAQTSLGLQLNLQLVPTMQLFM--QLAP--KLRGQTCGLCGNFNSIQADDFRTLSGVVEATAAAFFNTFKTQAA-CP---NIRNSFEDPCSLSVENEKYAQHWCSQL-TDADGPFGRCHAAVKPGTYYSNCMFDTCNCE---RSEDCLCAALSSYVHACAAKGVQLGGWRDGVCTKPMTTCPKSMTYHYHVSTCQPTCRSLSEGDITCSVGFIP---VDGCICPKGTFLD-DTGKCVQASNCPCYHRGSMIPNGESVHDSGAICTCTHGKLSC 792 HSP 6 Score: 91.6633 bits (226), Expect = 5.295e-18 Identity = 108/415 (26.02%), Postives = 156/415 (37.59%), Query Frame = 2
Query: 2960 CTVYGDPHIKTFDGKRYDMFGKCSYVLVDHC--HYGNSPKEFEIITKNTDCKNDDLGISCIRNILVNLTSINTRVALGSSLKNGRRLPSVIINGEDQKFYLNKDLLXXXXXXXXXXXHYRRKDMRIQWTGENIYISVS-SDYQNQTCGLCGTYNFNKEDDFHTRSDATETRVIPFTESWIYSDKD---------------------VSQDPSVCHTT--GWDTTEAPCNVFRQYESYAESSCSLIKDPEGPFKACHSVVPPSSHYKICKDDGCKCQ--KCYCNIVAAYAKACMDKGVPIDGWRERT-EDCMLQCSGNKVLRQCNTDKTGHNLRCPATCQDFSMNSTETCQSRGCI-EGCYCPDG--FYENNKHECVAKQECP--CTHNGMLYSFGQTRKEDCNTCTCMGGEFVCT 4102
C+ +GDPH TFDG Y C+YVLV YG+ F ++ N C +D G+SC R+I++ RV L +G +I N + K+ +V +Y +++ ++G + V S + N T G CGT +++D+ T + W S D + P+ +T G T APC C LI F+ CH+V+PP Y+ C D C C+ + YA C + ID WR RT C C +KV + C P+ C S G I EGC+CP+G + + CV CP +G G T DC CTC + T
Sbjct: 4921 CSGWGDPHYITFDGTYYTFLDNCTYVLVQQIVPVYGH----FRVLVDNYFCGAED-GLSCPRSIILEYH--QDRVVLTRKPVHGVMTNEIIFNNKVVSPGFRKNGIVVSRIGVKMYATIPELGVQVMFSGLIFSVEVPFSKFANNTEGQCGTCTNDRKDECRTPRGTVVASCSEMSGLWNVSIPDQPACHRPHPTPTTVGPTTVGSTTVGPTTVGSTTVGPTTPPAPC--------LPSPICQLILSKV--FEPCHTVIPPLLFYEGCVFDRCHMTDLDVVCSSLELYAALCASHDICID-WRGRTGHMCPFTCPADKVYQPCGPSN-------PSYCYGNDSASLGALPEAGPITEGCFCPEGMTLFSTSAQVCVPTG-CPRCLGPHGEPVKVGHTVGMDCQECTCEAATWTLT 5309 HSP 7 Score: 88.5817 bits (218), Expect = 4.104e-17 Identity = 89/350 (25.43%), Postives = 143/350 (40.86%), Query Frame = 2
Query: 4406 CAAWGQMHYRTFDGRMYKFDGGMCEYLLMSDCRSDPSKDYCDINSASINVKISNKRCQNSYEAYMCKQVA-IDLQTPEGKVEIVMMQEEVTVKRGITVMKFEKGSYPQPQTAVMNGVEVFKVGVYLIVR---AYLLDYTVKYDQQNRVYVVPGKKHVSSGIFSGLCGDFNGKTEDDFRRLDNAMADNALQFG--KSWADSSSACELTETDTCQQNPDRQAWAQKGCNVIRTGN-FTACHDTVDPSTYIESCQQETCLCKQGGDCACFCSALAAYVQECNRH-GIPIYWRREGLCRLDCCDPCGHSYGYYK-DNMIPKTCDDQKQTCDSNHRCCRGPVVEGCGCPNGTYDD 5428
C+ WG HY+TFDG +++F G +C Y+ C Y D N I +R Q S + + + +D V I + + V V ++ F + Q++ VE ++G+ L+ + LL+ KY + GLCGDFNG L + ++FG + D + C+ D + P + C + G F+ C VD +Y+E+C+Q+ C C+ +C C LA Y ++C G+P WR C C ++ Y++ + TC +Q+ + R C V GC CP GT D
Sbjct: 81 CSTWGSFHYKTFDGDVFRFPG-LCNYVFSEHC----GAAYEDFN-------IQLRRSQESAAPTLSRVLMKVD------GVVIQLTKGSVLVNGHPVLLPFSQSGVLIQQSSSYTKVEA-RLGLVLMWNHDDSLLLELDTKYANKT----------------CGLCGDFNGMPVVS-ELLSHNTKLTPMEFGNLQKMDDPTDQCQ----DPVPEPPRNCSTGFGICEELLHGQLFSGCVALVDVGSYLEACRQDLCFCEDTDLLSCVCHTLAEYSRQCTHAGGLPQDWRGPDFCPQK----CPNNMQYHECRSPCADTCSNQEHS-----RACEDHCVAGCFCPEGTVLD 381 The following BLAST results are available for this feature:
BLAST of TCONS_00069194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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