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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069229 ID=TCONS_00069229|Name=TCONS_00069229|organism=Clytia hemisphaerica|type=transcript|length=2783bp
GCGAAATGTCACGATTAGcaaaaaagatgaaatttcttcaagttttttta
aaccttttcatATTTCGCTTATCAATATGTCACAATATCTTACGTTGGTC
AGATATCAGAATCGCGAAATTTGTTCTCCGTCATACGGACAAGGTTCACG
CACAAACTCCGTACCGGGAATTCACCATTTTTGATGAAGCAGCTTGTATT
GATCGTTGCGTAGAAGACGGATCGGCGCCTTGTAAATCCGTTAATTTTTT
CCGCAACGAAACAGATGTTAACCAAAGTATCTGCCAGCTTCTTTCTGCTG
ATATCACCGACACCAATGAATACACCAATAAACCGGGATGGCGTCATTTT
GATACCGGAAAAACCCGATTAACCCGTTTAATGCATTCGGATGGTTATTG
TTTTGTGCCAAATGCAGCTTCATGTGTTTTTAGCTCATCAGTACTCTCAC
TTCGTCCCATGAGCGAGTGTGACGTTATTGAAGCGTGGTTCGATTTTGAT
CGAAATACAGGAATTATTTCACATGTCTGCAGTGGAAAAGCTCTTTGTCC
GGGATCAAGGACTTTCGGTAATGACATAACCTTAATCAATTTTGGCGATT
GTGAATTTTACAAGTTGGATTCTTACGAGAGGGAGAAGTTTCGAATTCAT
ATGAATGTCTTTCTTGAGTTTTACGTTGGTTGTGCATGTCAATATCCACT
CACAGGCAGTGTGGCAGGCAATACACTCCGTTTGACCCATTTTGGCAATT
GCGATAATCCAGCATGTCAAATGAGATACGATTTTGAAAACGGACCAGTA
AAAGTCACCATTGTCTCTATATCTGGTGTGCCGTATAACGGTCTTGTAAC
GAGAATAAGGGCAAAAATAAACGCGGGAGAGATCTGGGCAGTGCGTTATA
TAGATGGCTTGATGTATCGTACTCGAGCGCACGATACTTTCGGTACAAAA
ATGCAGACCATTTTCCAAGCACCGTCCACGGGAACGTACACATTTTACAT
CCATGTCGATAAGTATGCAAAGGTTATGATGAGCACAGACGAAACTAAAG
CTAATTTATTATTTCGATTGGGTGGTGGACCAATCTTTAACTGGGATGCg
GCTGTCGCGAACGAGTACAAAACAGATTTGGAGAAAGACAAGAAATATTA
CATGGAAATTTACACTTTTGATGACACTGGCGATGATTGGTTCTATCTCT
ATTTCAAAGCACCTGGAAATGGAGGATGGGAGGTCATGGGTTACGAATAC
CTTGAACCGTACACTggttgaaaaagcagaaaattaCAAGTTATATTCAT
GTTCACACACATGGATGATTAACcaataacccagctggcacacaacattg
tttcaacattcatttaacacgttatatagacgttgtgaacattagataaa
ggGGAACGGGGTACTAGATTTGCGAAGTGACGAGCCCGAGCCAAAAATCG
AGAGAGAAAAAAGTGACGTTTTTGGGGCCCTGCATAGAGACTTTTCCCAA
AATATTTGtcgattttcactcgatttgtttccaaattcttttaaaatcac
GACCCTTTCAGAGGGGGGAGtttcgattttcgtgaattttggaaTCTTTC
AGAGagtgaattgtttttttgtaaagagactttcgagggtgtaaaAATGG
GACCCTTATGGCTTATACATACCTGACATCCATTCTGCCCACGTACTCCC
CCTTCCCCCGTCAATATGGATTTTTACTGAatatttaagaacaaattttg
aTGTTTACTGTCTTTGGAATACCCgtgatttgatttttaaattttaggat
ttttaaatttgaacgaGTAAATTATATTCCCTAGCATAGAATATAAATCA
AATTTCTGTACATTTAGTAATATAATATAGCCTAATATCGTTTTAATGAT
TTGAATGTTTGTACAGGTTCATTGTCagtcacttttatttttatttcatg
atTATTTTTAACATATTTAACAATTTTTCCTATGCACAGGCATTGTTATT
TTATAATGTAGATATAACCTTCCCAAAAATCATGTAATGGGGAGAGTAGT
AGGGAAAATGCTTTTAAAGGCAGGGGGATTGTGATTATTTCATAGTGTAA
GTGGAACCTTACCAGAAACCCGGGGAGGGAAAGGGGTGTTAGAATCAAAG
TTTGTAACAGTGTTATTTTTTAAAAccatttttttaagattcaaaAGTTT
AACTTTGACCCGCAAATTCAAATCTTTTTGAGGCTACTTAAAAATGGTGG
ATTTTTCGGGCAGGTGAAGGAACAGAAGGTAGACTTTGCAAAAAGGGTTT
GGTCAAGAAGGGAGTTGTAGATTTATGGGTAGATGCACACTGCACATTTA
TTTGCAATTTATAATGAGACCATGtattcattttctttgagaatacTATT
CGctaggaaaaattttttttatcaatattctCTNTTTTCTTTGAGAATAC
TATTTgctaggaaaattttttttatcaatattctCTTCCTATCTTCGTTG
TTGACTGTTTGTAGTTTGATTGTACGCGTCCcctttgatatgttttgata
taggggatgcgcatcgtgtataaaattcccgtccgagagtaACCCCCGta
tttgtgtttttgagttttagaaaccTGATTGACTTGATTACctcaaggga
agaaattttggcgggaatttttggcggatggctgaaaaagatttttcgta
gggaatttaatttggcggatcagGGAAAAtgctaattttggcgagaaatT
GGTGAATGACGGATTTTTAAATCCGAAATCCAG Run BLAST on NCBI protein sequence of TCONS_00069229-protein >TCONS_00069229-protein ID=TCONS_00069229-protein|Name=TCONS_00069229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
EMSRLAKKMKFLQVFLNLFIFRLSICHNILRWSDIRIAKFVLRHTDKVHA
QTPYREFTIFDEAACIDRCVEDGSAPCKSVNFFRNETDVNQSICQLLSAD
ITDTNEYTNKPGWRHFDTGKTRLTRLMHSDGYCFVPNAASCVFSSSVLSL
RPMSECDVIEAWFDFDRNTGIISHVCSGKALCPGSRTFGNDITLINFGDC
EFYKLDSYEREKFRIHMNVFLEFYVGCACQYPLTGSVAGNTLRLTHFGNC
DNPACQMRYDFENGPVKVTIVSISGVPYNGLVTRIRAKINAGEIWAVRYI
DGLMYRTRAHDTFGTKMQTIFQAPSTGTYTFYIHVDKYAKVMMSTDETKA
NLLFRLGGGPIFNWDAAVANEYKTDLEKDKKYYMEIYTFDDTGDDWFYLY
FKAPGNGGWEVMGYEYLEPYTG Run BLAST on NCBI transcript from alignment at scaffold_496:139393..144281- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069229 ID=TCONS_00069229|Name=TCONS_00069229|organism=Clytia hemisphaerica|type=transcript|length=4889bp|location=Sequence derived from alignment at scaffold_496:139393..144281- (Clytia hemisphaerica)
GCGAAATGTCACGATTAGCAAAAAAGATGAAATTTCTTCAAGTTTTTTTA
AACCTTTTCATATTTCGCTTATCAATATGTCACAATATCTTACGTTGGTC
AGATATCAGAATCGCGAAATTTGTTCTCCGTCATACGGACAAGGTTCGCG
CACAAACTCNTTTCGCTTATCAATATGTCACAATATCTTACGTTTGTCAG
ATATCAGAATCGCGAAATTTGTTCTCCGTCATACGGACAAGGTTCACGCA
CAAACTCCGTACCGGGAATTCACCATTTTTGATGAAGCAGCTTGTATTGA
TCGTTGCGTAGAAGACGGATCGGCGCCTTGTAAATCCGTTAATTTTTTCC
GCAACGAAACAGATGTTAACCAAAGTATCTGCCAGCTTCTTTCTGCTGAT
ATCACCGACACCAATGAATACACCAATAAACCGGGATGGCGTCATTTTGA
TACCGGAAAAACCCGATTAACCCGTTTAATGCATTCGGATGGTTATTGTT
TTGTGCCAAATGCAGCTTCATGTGTTTTTAGCTCATCAGTACTCTCACTT
CGTCCCATGAGCGAGTGTGACGTTATTGAAGCGTGGTTCGATTTTGATCG
AAATACAGGAATTATTTCACATGTCTGCAGTGGAAAAGCTCTTTGTCCGG
GATCAAGGACTTTCGGTAATGACATAACCTTAATCAATTTTGGCGATTGT
GAATTTTACAAGTTGGATTCTTACGAGAGGGAGAAGTTTCGAATTCATAT
GAGTAAGTTTCTAATAAATTTCTTTTAGCCTCCTTAAACTTGACGCTCTT
CTAATAATAGTGTATTAAAATATTCTAAAGATCTGAGACGTAAATCCAGA
GATCTCAGTGAATATAAGAATGTCTTGTCCACTAAACCCGTAAACCTTTA
AGTACCGATACACGAATTAAATAATGGTAATTTTTTTGAACACATAAATA
GAGAGAGCTTCGATTTGACGGATAACTATTGTACCAAATTTTATAATAAA
ACTCTTTTGATAAGTGAACTTTCTATAATAATTGTATCACATTAAAGTTC
AGCTAAGTTTCCGATAGAATAAAATGTCAACATTTCTTTTCTTCCTCATA
GATGTCTTTCTTGAGTTTTACGTTGGTTGTGCATGTCAATATCCACTCAC
AGGCAGTGTGGCAGGCAATACACTCCGTTTGACCCATTTTGGCAATTGCG
ATAATCCAGCATGTCAAATGAGATACGATTTTGGTAAGATGTTTTTTCCT
TTCACTTTCATGGCTTTTATTATCGCCTCGACGTGTAATGAATTGATCTC
TTCCAAAAAACCTCTCGAAATAGGAGATTGAAGATGTATTATCCAGTAAC
TATTATCCAGCGACCGTAGTGTAATGGTAGAGCATTCGGCTACGATTTGC
AAGGTTGCGAGTTCAACCTCCAGCCAGGTCATACCAAAGATTCCCAAAAT
GGTACTTGATGCCTCTCTGCTTGATGCTCAGTAATTAAGAGAAGGATAAG
GGTAAGTGGAGCAATCCAGGGAGAAAAAGTTGAGTCCTCCCTTACCTTCG
GGTATAGCTATCAAAAGTGGAGCCTTCGGGTCGCCTCCGACTGCGGTCGC
AGACTTACTTATCCTGGGCTATTGGAAAATACTGAAAAATCGGCCTATCT
CTATGTGGTGAATTTGGTGTTTTTAGTTTAGAGGAGTAAGACCTGGCTAG
GGGTGAAAATCAAACTTTTTAAAGGTAGATCATTAAAAAAGTGACATAAT
ATCTGCCCATTGGAAATAAACTACCTTATTACGCGAATATCACTAGTCGT
TTTATTAACACGAATCGAAAAATTTCGTGTTAATCAAAACCTCCTTAATT
TAGCCATTGCACAACGTTTAAGCTACTTTACCCCGAAATGTAGGTGATCC
TTTTTCCATAAAAGTTCAGGCCAAGTCAAAAATGGTTGTTGAATTTTTTT
AACGTAATTTATTGCAAAATTGAGAGAGTTTTTCATCATCAATGTTCGGA
CCAGCAAAAATCACGGTGTACTCGCTCATTCGAACTTCTGCTATTCAAAT
CTTTCTTTAATTTAAAACTGATTAATTTAGAAAAACACTTTCTTTAATTC
GAACTCTTCCGTAGTCTCTTTATTTCGAAAAAATTAGACTCCAACTTTGA
GTTCGAATAAGGGAGAGTTAACGGTAGCGTCTTTTTGTATCAGTTTCCCT
TCCTTTTGTTTATTTTACAGAAAACGGACCAGTAAAAGTCACCATTGTCT
CTATATCTGGTGTGCCGTATAACGGTCTTGTAACGAGAATAAGGGCAAAA
ATAAACGCGGGAGAGATCTGGGCAGTGCGTTATATAGATGGCTTGATGTA
TCGTACTCGAGCGCACGATACTTTCGGTACAAAAATGCAGACCATTTTCC
AAGCACCGTCCACGGGAACGTACACATTTTACATCCATGTCGATAAGTAT
GCAAAGGTTATGATGAGCACAGACGAAACTAAAGCTAATTTATTATTTCG
ATTGGGTGGTGGACCAATCTTTAACTGGGATGCGTAAGTCTTGAATGCTC
GTTCATAAGTATCCTTACTTTTTAACTTATCGGCAAAAATGTCTTCAGTC
AATGTTTTCAAATTGGTCACTTCCCTGAACAAAACTTCACTTTTCAAAAG
TATCCACTGTCTGAGTGAGTTCTTCAAAATATCTGTTCTGAAGACTACAT
TTCACAGTCGCAAAGCGTAATGGGTAATCATATGACCACTGCGCGCTAAT
GACAAGATTTTTGCGTCTAGCCATAAGAAAGCCGTTATGGAGGCGCAACC
AGTCCTGATTACCCATGATCCATTTCGACCGTGTAATGGCCGATACCACT
ACTCTAAGGTCCCGAATAAACCTCTCATCTGCTTATTCATTTCCGAAAAA
TTTATTTTAGATTAATTTTTTTACCACCTGTTGATGTCGTGTATTTTACA
GACCGGACTTAGATTGCTGTTTTTATTCTCCAAAATCAGCTCTAGTAAAA
AAAAGGAGGATTCTTAAAGGCTTAATACGTTTTGTAACATCGAAAAACTT
TTTCTTTTTTTTTGATTTTTCTTTGATCACCAAAATAATGGTATATATAT
AACAACTATTTGCCCCCCCCCCCATTTCTGGGTTTTCAATATTACATAAT
CTTTTCATCGAAATTGTGTACCGTAATATGGTAGCACTACTTTTTAATTT
TATAGGGCTGTCGCGAACGAGTACAAAACAGATTTGGAGAAAGACAAGAA
ATATTACATGGAAATTTACACTTTTGATGACACTGGCGATGATTGGTTCT
ATCTCTATTTCAAAGCACCTGGAAATGGAGGATGGGAGGTCATGGGTTAC
GAATACCTTGAACCGTACACTGGTTGAAAAAGCAGAAAATTACAAGTTAT
ATTCATGTTCACACACATGGATGATTAACCAATAACCCAGCTGGCACACA
ACATTGTTTCAACATTCATTTAACACGTTATATAGACGTTGTGAACATTA
GATAAAGGGGAACGGGGTACTAGATTTGCGAAGTGACGAGCCCGAGCCAA
AAATCGAGAGAGAAAAAAGTGACGTTTTTGGGGCCCTGCATAGAGACTTT
TCCCAAAATATTTGTCGATTTTCACTCGATTTGTTTCCAAATTCTTTTAA
AATCACGACCCTTTCAGAGGGGGGAGTTTCGATTTTCGTGAATTTTGGAA
TCTTTCAGAGAGTGAATTGTTTTTTTGTAAAGAGACTTTCGAGGGTGTAA
AAATGGGACCCTTATGGCTTATACATACCTGACATCCATTCTGCCCACGT
ACTCCCCCTTCCCCCGTCAATATGGATTTTTACTGAATATTTAAGAACAA
ATTTTGATGTTTACTGTCTTTGGAATACCCGTGATTTGATTTTTAAATTT
TAGGATTTTTAAATTTGAACGAGTAAATTATATTCCCTAGCATAGAATAT
AAATCAAATTTCTGTACATTTAGTAATATAATATAGCCTAATATCGTTTT
AATGATTTGAATGTTTGTACAGGTTCATTGTCAGTCACTTTTATTTTTAT
TTCATGATTATTTTTAACATATTTAACAATTTTTCCTATGCACAGGCATT
GTTATTTTATAATGTAGATATAACCTTCCCAAAAATCATGTAATGGGGAG
AGTAGTAGGGAAAATGCTTTTAAAGGCAGGGGGATTGTGATTATTTCATA
GTGTAAGTGGAACCTTACCAGAAACCCGGGGAGGGAAAGGGGTGTTAGAA
TCAAAGTTTGTAACAGTGTTATTTTTTAAAACCATTTTTTTAAGATTCAA
AAGTTTAACTTTGACCCGCAAATTCAAATCTTTTTGAGGCTACTTAAAAA
TGGTGGATTTTTCGGGCAGGTGAAGGAACAGAAGGTAGACTTTGCAAAAA
GGGTTTGGTCAAGAAGGGAGTTGTAGATTTATGGGTAGATGCACACTGCA
CATTTATTTGCAATTTATAATGAGACCATGTATTCATTTTCTTTGAGAAT
ACTATTCGCTAGGAAAAATTTTTTTTATCAATATTCTCTNTTTTCTTTGA
GAATACTATTTGCTAGGAAAATTTTTTTTATCAATATTCTCTTCCTATCT
TCGTTGTTGACTGTTTGTAGTTTGATTGTACGCGTCCCCTTTGATATGTT
TTGATATAGGGGATGCGCATCGTGTATAAAATTCCCGTCCGAGAGTAACC
CCCGTATTTGTGTTTTTGAGTTTTAGAAACCTGATTGACTTGATTACCTC
AAGGGAAGAAATTTTGGCGGGAATTTTTGGCGGATGGCTGAAAAAGATTT
TTCGTAGGGAATTTAATTTGGCGGATCAGGGAAAATGCTAATTTTGGCGA
GAAATTGGTGAATGACGGATTTTTAAATCCGAAATCCAG Coding sequence (CDS) from alignment at scaffold_496:139393..144281- >TCONS_00069229 ID=TCONS_00069229|Name=TCONS_00069229|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_496:139393..144281- (Clytia hemisphaerica)
GAAATGTCACGATTAGCAAAAAAGATGAAATTTCTTCAAGTTTTTTTAAA
CCTTTTCATATTTCGCTTATCAATATGTCACAATATCTTACGTTGGTCAG
ATATCAGAATCGCGAAATTTGTTCTCCGTCATACGGACAAGGTTCACGCA
CAAACTCCGTACCGGGAATTCACCATTTTTGATGAAGCAGCTTGTATTGA
TCGTTGCGTAGAAGACGGATCGGCGCCTTGTAAATCCGTTAATTTTTTCC
GCAACGAAACAGATGTTAACCAAAGTATCTGCCAGCTTCTTTCTGCTGAT
ATCACCGACACCAATGAATACACCAATAAACCGGGATGGCGTCATTTTGA
TACCGGAAAAACCCGATTAACCCGTTTAATGCATTCGGATGGTTATTGTT
TTGTGCCAAATGCAGCTTCATGTGTTTTTAGCTCATCAGTACTCTCACTT
CGTCCCATGAGCGAGTGTGACGTTATTGAAGCGTGGTTCGATTTTGATCG
AAATACAGGAATTATTTCACATGTCTGCAGTGGAAAAGCTCTTTGTCCGG
GATCAAGGACTTTCGGTAATGACATAACCTTAATCAATTTTGGCGATTGT
GAATTTTACAAGTTGGATTCTTACGAGAGGGAGAAGTTTCGAATTCATAT
GAATGTCTTTCTTGAGTTTTACGTTGGTTGTGCATGTCAATATCCACTCA
CAGGCAGTGTGGCAGGCAATACACTCCGTTTGACCCATTTTGGCAATTGC
GATAATCCAGCATGTCAAATGAGATACGATTTTGAAAACGGACCAGTAAA
AGTCACCATTGTCTCTATATCTGGTGTGCCGTATAACGGTCTTGTAACGA
GAATAAGGGCAAAAATAAACGCGGGAGAGATCTGGGCAGTGCGTTATATA
GATGGCTTGATGTATCGTACTCGAGCGCACGATACTTTCGGTACAAAAAT
GCAGACCATTTTCCAAGCACCGTCCACGGGAACGTACACATTTTACATCC
ATGTCGATAAGTATGCAAAGGTTATGATGAGCACAGACGAAACTAAAGCT
AATTTATTATTTCGATTGGGTGGTGGACCAATCTTTAACTGGGATGCGGC
TGTCGCGAACGAGTACAAAACAGATTTGGAGAAAGACAAGAAATATTACA
TGGAAATTTACACTTTTGATGACACTGGCGATGATTGGTTCTATCTCTAT
TTCAAAGCACCTGGAAATGGAGGATGGGAGGTCATGGGTTACGAATACCT
TGAACCGTACACTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069229-exon-scaffold_496-1575043694:144139..144281 | TCONS_00069229-exon-scaffold_496-1575043694:144139..144281 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1575043694:143530..144040 | TCONS_00069229-exon-scaffold_496-1575043694:143530..144040 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1575043694:143049..143180 | TCONS_00069229-exon-scaffold_496-1575043694:143049..143180 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1575043694:141749..142061 | TCONS_00069229-exon-scaffold_496-1575043694:141749..142061 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1575043694:139393..141076 | TCONS_00069229-exon-scaffold_496-1575043694:139393..141076 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1510915933:144139..144281 | TCONS_00069229-exon-scaffold_496-1510915933:144139..144281 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1510915933:143530..144040 | TCONS_00069229-exon-scaffold_496-1510915933:143530..144040 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1510915933:143049..143180 | TCONS_00069229-exon-scaffold_496-1510915933:143049..143180 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1510915933:141749..142061 | TCONS_00069229-exon-scaffold_496-1510915933:141749..142061 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1510915933:139393..141076 | TCONS_00069229-exon-scaffold_496-1510915933:139393..141076 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1491911889:144139..144281 | TCONS_00069229-exon-scaffold_496-1491911889:144139..144281 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1491911889:143530..144040 | TCONS_00069229-exon-scaffold_496-1491911889:143530..144040 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1491911889:143049..143180 | TCONS_00069229-exon-scaffold_496-1491911889:143049..143180 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1491911889:141749..142061 | TCONS_00069229-exon-scaffold_496-1491911889:141749..142061 | Clytia hemisphaerica | exon |
| TCONS_00069229-exon-scaffold_496-1491911889:139393..141076 | TCONS_00069229-exon-scaffold_496-1491911889:139393..141076 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:139393..144281 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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