TCONS_00069731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069731
Unique NameTCONS_00069731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069731 ID=TCONS_00069731|Name=TCONS_00069731|organism=Clytia hemisphaerica|type=transcript|length=2811bp
AGGATCCAAATTATCCTTCGAAGAATTTGCTCAAATCCGGAAAATGGTTA
TGTGATAGAAACAATCCTCATCAATCGGCTGAAGTTGAAATATCTTTTTC
AAGAGCAACAACAATTCACTTCATTGATATAGGGAACAGTGGTAGCTGTT
ATGTAGATATCTTAGTACGTCATTCTCTGAAAGGAAATGACTTCAAAAGT
CTAATACCAACTTTCACATTCATGTCCGTGCCAGAAAGTAAATCAGGGGA
AAATAAATGTAAAGTTGAAATGTTCAAACAAgACAGAATGATGGCTGATG
TCAGAGATGAAAAATGGGATGTCCTGAAGATAGTGTGCCGCCAACCATAC
AAACCCAATGCTCAATATGGCATCAGCTTTGTTAATGTAAGGGGATGTAG
TTCTGGAACTAATCAAGcaaaagatgtaaaagcaaagcCTCCTCAACCGT
CAAATCAATCTGCACTAAATTCGTTTTTCGGATTTAATAACACTGGTCTG
GTCTCCCCAAAGCCTGGAAAAACACTGGcattaaaatctaaatcacCTAT
ACTGAAATCACCTCATCAAGTTATGTTGACAAAGACAAAAGtTACAAATG
AAATTCAAGAAAGCCCAACCAAATATTCGTCAGAAAAGTTGAAGttccTC
AATGATGCAGAAGAGTTTTTGTATAGAGCTGGTTTTGATGAAGCCATCAA
ATTGGGGAAGCCAATCCTAATGGCAGAATACAGagaaatgattgaaaaag
aacGAGGACAAAAATTGTCAAGGCAGCAAAAGAAACTTCTTGTATATatt
GCTActgaaatgaagaaaactttaCAAGCAGAGAAAAACAATGCTAAGAT
TTCATCAACTCCACCAAATATGAATAGTCTTGAACGtgaatgtacaaaat
gtgaagtCAGtttttcaattGAAGTTATGGAAATCCATGAGCAAATTTGT
ACAGCAACTCCCAGGACTAAACCAAGACAAAATCGAAAATCCATATGTTT
TGATTATACCATGTCAGATGAGGATAAATCAATACAAAGTTTCAATAAAA
GAAAACCATCAATGTCCACAAAATTAACATCTGCTGGTGAAACTTCTGCT
TCATCAGCATCCTCTAGCCCTGAATCTCGTTGGTATGGTAAAACAATACC
TAAAAGCTCTGGATCAAATATTACAACAACACCAAAAAGCTCAGGCTCTA
CAGCTACAATAACATTGAAATCCTCCTCAAAACTATTTGCACGTAAACGG
TCAGGATCTACTAGTAAAGCAGCTAAAGCTAAATTACCGGAACCTGTTAA
TTTACCAATTATAGATACACATGTGTCCAAAACTGGACGTGATTCTCCAA
TCTCAAAGAAGCTATTTCTCGATCACAACCAAAACGAAAATGTAAAATCT
AATAACAATAGTGATGATTTCTTTGATGACATGAATCTCAGTGACTTTGA
GGATGATACTACTAATAACGATGATGATTTAGTTGTTACAAAAGACACAA
ATTTCAAAAGGGACAATTTTCAGAACTCTATTTCTATAaatgatgatgac
gatgataTCATAATTTCCAAAGAAAAGAATAACTCACATAATACACAATA
TGTTGAATGCCCAATGTGTTTTGAACTCATGAGTACCACTATTATTGAAC
TACATGCTTCTACGTGTAATGGAAAAACAGAGACAACaccacaaactttc
aataataaaCCAAGCTCAAATGCATTTGCAGCTACTCCATATCTTTCAAG
TGTCAATAGACAAGCAAACAAGATGGGTTCTAATGCATCTACAGTGAGTC
CGAATCTTTCAACAACTAACGGTTCATTGGAGAATCACCAACACCAAGGC
GATACTCAAGAATGTCCTGTCTGTAACAAACAAATCAATAAATATAAAAT
TGCTGTCCATGTTGTTTTGTGTACTGGTAAGGGTCTGGATAATGATAAAG
AAGATGATGACCTACCATCCATTTTCAACAGAAAATCTTCTAGTACTTCC
GCAACGAAAACAAAGACTTCTAAAAAGTCTTCTTCTACTAATGCTAGTCC
CTCCCCTTCAGGGGCTCATAATGTGATGAGTGTTATGCACAAGCCTTCAG
GGAGCCACAATGCAATGAACACTTTCCAAAATACAAACAACACTGGTGCC
AGTTATAATCCTTCGGGAGCTCATAATACACCAACTAATAGTATACTAGT
TCCTGACCATGATTATGGGAAAAGAGAGGAAGCTTCTTGTCCCATATGCT
CAATAACATTGGATAAGAGTATGATTGAAGTACACGTTAATATGTGTTTA
GACAGATTGCAATGAAGCTGTTTGAATTCAGATATTTAAGTTGTATTTAA
AGGGGTTATCAGATGATTCTTgatatttggcttagagataccttttgacc
tattttttttccaaagctgagatacttgactttgaaatttctaaaaataa
gtctttacacagtctttacgttgaatttctattattttcaagtcaaaatt
ttaaaattcagagtcgaatatctcagctttggaaaataattgggtcataa
actttggaggtgtttcttaggaccataaaaggtatctctaagccaaatat
aaaaaatcatctgataatccctttaaaGTTGACTTTTGATCTCAATGCAA
GATGACATTACATAATTTTCTAATAATTACTGAGATGCTATTTGGCTTTG
TCATAATTTGACTATGTTGACTATTTGAATAATGCAATAAGAGGTCATTT
TGGATTTTGATATTCTTGAAatacattatatatttttatcttatttgAGT
CAAACCTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00069731-protein

>TCONS_00069731-protein ID=TCONS_00069731-protein|Name=TCONS_00069731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp
DPNYPSKNLLKSGKWLCDRNNPHQSAEVEISFSRATTIHFIDIGNSGSCY
VDILVRHSLKGNDFKSLIPTFTFMSVPESKSGENKCKVEMFKQDRMMADV
RDEKWDVLKIVCRQPYKPNAQYGISFVNVRGCSSGTNQAKDVKAKPPQPS
NQSALNSFFGFNNTGLVSPKPGKTLALKSKSPILKSPHQVMLTKTKVTNE
IQESPTKYSSEKLKFLNDAEEFLYRAGFDEAIKLGKPILMAEYREMIEKE
RGQKLSRQQKKLLVYIATEMKKTLQAEKNNAKISSTPPNMNSLERECTKC
EVSFSIEVMEIHEQICTATPRTKPRQNRKSICFDYTMSDEDKSIQSFNKR
KPSMSTKLTSAGETSASSASSSPESRWYGKTIPKSSGSNITTTPKSSGST
ATITLKSSSKLFARKRSGSTSKAAKAKLPEPVNLPIIDTHVSKTGRDSPI
SKKLFLDHNQNENVKSNNNSDDFFDDMNLSDFEDDTTNNDDDLVVTKDTN
FKRDNFQNSISINDDDDDIIISKEKNNSHNTQYVECPMCFELMSTTIIEL
HASTCNGKTETTPQTFNNKPSSNAFAATPYLSSVNRQANKMGSNASTVSP
NLSTTNGSLENHQHQGDTQECPVCNKQINKYKIAVHVVLCTGKGLDNDKE
DDDLPSIFNRKSSSTSATKTKTSKKSSSTNASPSPSGAHNVMSVMHKPSG
SHNAMNTFQNTNNTGASYNPSGAHNTPTNSILVPDHDYGKREEASCPICS
ITLDKSMIEVHVNMCLDRLQ
Run BLAST on NCBI

transcript from alignment at scaffold_506:468427..475294-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069731 ID=TCONS_00069731|Name=TCONS_00069731|organism=Clytia hemisphaerica|type=transcript|length=6868bp|location=Sequence derived from alignment at scaffold_506:468427..475294- (Clytia hemisphaerica)
AGGATCCAAATTATCCTTCGAAGAATTTGCTCAAATCCGGAAAATGGTTA
TGTGATAGAAACAATCCTCATCAATCGGCTGAAGTTGAAATATCTTTTTC
AAGAGCAACAACAATTCACTTCATTGATATAGGTAAGATGACTTGCACAT
TAGACAAGGTGGAACTTTTCACATTGTTTTTTTTAAATGGCAGAAAGGTA
ACAACTGGCTTTGTTTAACACTGAAATATTTCAAAACACTCCTGAACATT
CTCTCAAGCTTTGGACAAAAACTAAATGTTATTCTGATCGAGTATTTGAA
AATTTATTTTAATCTATTTATAGGGAACAGTGGTAGCTGTTATGTAGATA
TCTTAGTACGTCATTCTCTGAAAGGAAATGACTTCAAAAGTCTAATACCA
ACTTTCACATTCATGTCCGTGCCAGAAAGTAAATCAGGGGAAAATAAATG
TAAAGTTGAAATGTTCAAACAAGGTAAATTAGATTTTTTTATCAATGTTT
TAATCAGATCTTACATTTAGGATAAAGATCCTATCTGTTTATTCTCTCAA
TGTTTTTCCCTTAGAATCAAAGTCATCTTGTTTTCTCAGTTATATTTTTG
TATTTTTATTTTTCTGTGACAACGTGCCTTTTCTCAAATTACTAAGAATT
TGTGGTAATAAAGCCTTTTTAGTGGAAAAAGAACCTGTTTTTGCCAACAA
CTAGATATTTTTGAAAATATGACCTGGAAAAAAAAAATTTAAAAGTCTAT
AATTAATAAATTTTAGACAGAATGATGGCTGATGTCAGAGATGAAAAATG
GGATGTCCTGAAGATAGTGTGCCGCCAACCATACAAACCCAATGCTCAAT
ATGGCATCAGCTTTGTTAATGTAAGGGGATGTAGTTCTGGAACTAATCAA
GCAAAAGATGTAAAAGCAAAGCCTCCTCAACCGTCAAATCAATCTGCACT
AAATTCGTTTTTCGGATTTAATAACACTGGGTGAGTTTTCTGATTCAATT
TAATTGATTCAACAATTTTTCATCTGTGATGATCATAAAGAAGCTTGCTT
CACTTTGCTGTATCTTTATAATGATGTCTTTTTTTTGCTCATTGGCAATT
ATTCTAGACACGAGATAATGCTCAAAGATTTAAAGCATAATAACTTGTAA
ATGAATGGTGTTTTTCTTGTCTGAAAAGCAGTTATTATTCTATGTGAAAC
AAGAAATTTAGTTATTATTTTAAACTAAACCAGTTATCATCTTTTTCCTT
GTTATTTAAGTCTGGTCTCCCCAAAGCCTGGAAAAACACTGGCATTAAAA
TCTAAATCACCTATACTGAAATCACCTCATCAAGTTATGTTGACAAAGAC
AAAAGGTTTGTTTATTGAAATTATTCTTCAGCATAGTTTTCATGGTTCTT
TATTATTTTTTTAAATACTTGAATTTAAATTTCGCACACAATTCCTGATG
CATAAACTGTATAACATTTTTTTATCATTTAGTTACAAATGAAATTCAAG
AAAGCCCAACCAAATATTCGTCAGAAAAGTTGAAGGTTTGTTTATTACTT
TCTTATCCTTTGTTCACTTCTTGTATACTTTTTGGGGTTCTAGGAAAACT
GCCCCCGAGAAAATTGCCCCCCGGAAAACTGCCCCCGGAAAATTGCCCCC
TAGAAAATTGCCCCCTAGGAAAATTGCCCCCTAGGAAAATTGCCCCCTAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTGCTTGAAATCTTACACCCTCTTCTCACAGACCCGGTAGGA
TTTTTTTAGCCAGTGGGGATAAAAATAACGGACTGAAAGTCGATATTCCT
TTATTTTTTATGGCTGGGGAAAAATCAGAAAATTCAATGGCCATTTGAAG
TTTCATTGGATTTTATAAAAAAGTGGAAAAAAAGATGGCGGTGGGGGGTA
GCAATTTTCTAGGGGGCAATTTTCCTAGGGGGCAATTTTCCGGGGGGCAG
TTTACCGGGGGGCAGTTTTCTCGGGGGCAATTTTCCTGACACCACTTTTT
GGACCTACCTGGAGGTCCTTTAATTTGACTGTTGTCCGTCCGTCCGTTCG
TCTGTTACAAGCTTTTTTGGGACTGGCTCATTAGTTTTTTTCATTTTTAG
CACAGTAATGCAAAATAGCAATGCCTAAAAGGTGACGGAGCCTGATTTTT
GAGAAAAAAAAATTGGGGGCAAATTTGGGCCAAAACTGCCTAAAAATAGG
GTTTTTTGGATTTTGTGCAAAATTGCTTCATTAGTTTTTCCTGATATTTG
GCAGAAAGATAGAGTGCTAGGTGGCCTAAATTGCGGCTGATGTGATTTTT
CCCTTTAGTCGTTTTGAGGGAAAATGGCGATTGGCATGGTAATAGAAAAA
AATGATTCTAATTTTTTTTACATAAAGATAGAGGGAAAGGTTTTCCATAA
TTTTTTTCTTGCAGTAAAATTCTGATTTTCTTATGTTGAAACAAAAATAC
CCTTCAGTAAATTTATGGGGAAATGAGTATTTCTCGCGATTGGCTTGGTA
TTATTTTCTGAATTTTAGTTTGTCTGACTATTGTTGCCATTATTCTATTT
TTTTTATTACACTATAGCCTTTAGGTAGGTCCATTCAGCATGTAGCTTGT
TTTTCGTTTATTCCTTAATGAATAGAATCAACAGAAATATTGAAAAATGA
AGACATCATGAAATACTAGGTTGATTTTAATATTTTTGTATAATAATTGA
GCAAACTTTCAATATTACAATTTTAGTTCCTCAATGATGCAGAAGAGTTT
TTGTATAGAGCTGGTTTTGATGAAGCCATCAAATTGGGGAAGCCAATCCT
AATGGCAGGTACACCAAATTTCATGAACTGTTATACTTCGAAAATTACTC
AAACTAGATTATTATTTTATTCTTGCAGAAAAAAATTCATAAAGATTAAT
GCAATGCTACTTTCTGATAACACCCAGTAACACCTACCTTTTATACATAC
CCCAGCTGGCACACAACGTTCTTTTAACGTTTATCTAACGTTCACAACGT
CCATGTAATGTTAGATGAACGTTGAAACAACATTGTTTGCCAACTGGGAC
TTAAGATCAGATTTTTCTTGGAATGACTGTTTTTAACCAAAATTGTTATT
CTCTTTAGAATACAGAGAAATGATTGAAAAAGAACGAGGACAAAAATTGT
CAAGGCAGCAAAAGAAACTTCTTGTATATGTAGGTATTACTTATTTACAT
CTTGCTCCTGTCTTATTGATAAACAATCAGATTTTCACTAATCCAATTTT
TCTTCTTTAGATTGCTACTGAAATGAAGAAAACTTTACAAGCAGAGAAAA
ACAATGCTAAGGTAATGTTTTAGAATAATAAGTTTTTACGATTTTTTTCG
TTAAAAAGTAAATGAATGTAAAGGTCAACCCTCTTTGATTCACACCTCTA
CTATTCAAATCAATCTTCTTAATAGAAAATCAGCCCAAATTTGAGTCCTG
TCATAATTTAAAAAAAATTTGCTTCGTGAAGTTTGAATTAGAGAAAGTCA
ACTGTAACAGCAAAGATATAAAGGGCTGAGAATGACAAACCATTTCATTG
GTGGTCATTTTGAGTGTATCATACAGAAAAATCTCTTTCTACAGAATTCT
TTATGTTTCCTCTCTTCTCGGGTAAAAAAATCACTTTTCGTTAGAATTCT
GACTTTGGCTGATTAATAAGCATGAATTACACGCCATTGTAGAGTACCTT
TAGGGAAGAAATTTTTGCGGAATTAAATTTTGCGGTTTTTTGACAAATCC
GTAAAATTAAATTCCATGAAACACAAATAATCTAGATTTAAAAAATCACC
TCTAAAATATGCCATTTTGTAAACAAAACATTCTCTCAACTGCAAAATTA
AATTCAACGAAACGAAATTTTGAGCTGTGAATCACGAAAATTTCTTCCCC
CAAAAATTTCTTCTCGTATACTATAAATGTACTTTTAATTATGTTTTCAG
ATTTCATCAACTCCACCAAATATGAATAGTCTTGAACGTGAATGTACAAA
ATGTGAAGTCAGGTAGTATATAAATTATTTCAGAAACTCAAAATAAAATT
TAAAAAATTCAGTATTTAAGGATTCACTTTATTAAACACACTTTAGGAGG
ACTTAAAAATTGAGCTTGCATATGTTTAACAGAATAACTTTTTTATAGTA
AGTCAAACCTATTTTTCAATCAAAAAAACGAATCTCAGGTAAATAAAAAC
TGCACCTCCGACAATTAGCCCTTAGAATGACTAAATTGTGCAAAACAGTA
AGGAAATTAAGTTAATCTTTAATTATTTTACTTTTTTTAGTTTTTCAATT
GAAGTTATGGAAATCCATGAGCAAATTTGTACAGCAACTCCCAGGACTAA
ACCAAGACAAAATCGAAAATCCATATGTTTTGATTATACCATGTCAGATG
AGGATAAATCAATACAAAGTTTCAATAAAAGAAAACCATCAATGTCCACA
AAATTAACATCTGCTGGTGAAACTTCTGCTTCATCAGCATCCTCTAGCCC
TGAATCTCGTTGGTATGGTAAAACAATACCTAAAAGCTCTGGATCAAATA
TTACAACAACACCAAAAAGCTCAGGCTCTACAGCTACAATAACATTGAAA
TCCTCCTCAAAACTATTTGCACGTAAACGGTCAGGATCTACTAGTAAAGC
AGCTAAAGCTAAATTACCGGAACCTGTTAATTTACCAATTATAGATACAC
ATGTGTCCAAAACATCATCCTTAAGCAGTACAAAAACTGGACGTGATTCT
CCAATCTCAAAGAAGCTATTTCTCGATCACAACCAAAACGAAAATGTAAA
ATCTAATAACAATAGTGATGATTTCTTTNTCTACAGCTACAATAACATTG
AAATCCTCCTCAAAACTATTTGCACGTAAACGGTCAGGATCTACTAGTAA
GGCAGCTAAAGCTAAATTACCGGAACCTGTTAATTTACCAATTATCAATA
CACATGCGTCCAAAACATCATCCTTAAGCAGTACAAAAACTGGACGTGAT
TCTCCAATCTCAAAGAAGCTATTTCTCGATCACAACCAAAACGAAAATGT
AAAATCTAATAACAATAGTGATGATTTCTTTGATGACATGAATCTCAGTG
ACTTTGAGGATGATACTACTAATAACGATGATGATTTAGTTGTTACAAAA
GACACAAATTTCAAAAGGGACAATTTTCAGAACTCTATTTCTATAAATGA
TGATGACGATGATATCATAATTTCCAAAGAAAAGAATAACTCACATAATA
CACAATATGTTGAATGCCCAATGTGTTTTGAACTCATGAGTACCACTATT
ATTGAACTACATGCTTCTACGTGTAATGGAAAAACAGAGACAACACCACA
AACTTTCAATAATAAACCAAGCTCAAATGCATTTGCAGCTACTCCATATC
TTTCAAGTGTCAATAGACAAGCAAACAAGATGGGTTCTAATGCATCTACA
GTGAGTCCGAATCTTTCAACAACTAACGGTTCATTGGAGAATCACCAACA
CCAAGGCGATACTCAAGAATGTCCTGTCTGTAACAAACAAATCAATAAAT
ATAAAATTGCTGTCCATGTTGTTTTGTGTACTGGTAAGGGTCTGGATAAT
GATAAAGAAGATGATGACCTACCATCCATTTTCAACAGAAAATCTTCTAG
TACTTCCGCAACGAAAACAAAGACTTCTAAAAAGTCTTCTTCTACTAATG
CTAGTCCCTCCCCTTCAGGGGCTCATAATGTGATGAGTGTTATGCACAAG
CCTTCAGGGAGCCACAATGCAATGAACACTTTCCAAAATACAAACAACAC
TGGTGCCAGTTATAATCCTTCGGGAGCTCATAATACACCAACTAATAGTA
TACTAGTTCCTGACCATGATTATGGGAAAAGAGAGGAAGCTTCTTGTCCC
ATATGCTCAATAACATTGGATAAGAGTATGATTGAAGTACACGTTAATAT
GTGTTTAGACAGATTGCAATGAAGCTGTTTGAATTCAGATATTTAAGTTG
TATTTAAAGGGGTTATCAGATGATTCTTGATATTTGGCTTAGAGATACCT
TTTGACCTATTTTTTTTCCAAAGCTGAGATACTTGACTTTGAAATTTCTA
AAAATAAGTCTTTACACAGTCTTTACGTTGAATTTCTATTATTTTCAAGT
CAAAATTTTAAAATTCAGAGTCGAATATCTCAGCTTTGGAAAATAATTGG
GTCATAAACTTTGGAGGTGTTTCTTAGGACCATAAAAGGTATCTCTAAGC
CAAATATAAAAAATCATCTGATAATCCCTTTAAAGTTGACTTTTGATCTC
AATGCAAGATGACATTACATAATTTTCTAATAATTACTGAGATGCTATTT
GGCTTTGTCATAATTTGACTATGTTGACTATTTGAATAATGCAATAAGAG
GTCATTTTGGATTTTGATATTCTTGAAATACATTATATATTTTTATCTTA
TTTGAGTCAAACCTTTTC

Coding sequence (CDS) from alignment at scaffold_506:468427..475294-

>TCONS_00069731 ID=TCONS_00069731|Name=TCONS_00069731|organism=Clytia hemisphaerica|type=CDS|length=2313bp|location=Sequence derived from alignment at scaffold_506:468427..475294- (Clytia hemisphaerica)
GATCCAAATTATCCTTCGAAGAATTTGCTCAAATCCGGAAAATGGTTATG
TGATAGAAACAATCCTCATCAATCGGCTGAAGTTGAAATATCTTTTTCAA
GAGCAACAACAATTCACTTCATTGATATAGGGAACAGTGGTAGCTGTTAT
GTAGATATCTTAGTACGTCATTCTCTGAAAGGAAATGACTTCAAAAGTCT
AATACCAACTTTCACATTCATGTCCGTGCCAGAAAGTAAATCAGGGGAAA
ATAAATGTAAAGTTGAAATGTTCAAACAAGACAGAATGATGGCTGATGTC
AGAGATGAAAAATGGGATGTCCTGAAGATAGTGTGCCGCCAACCATACAA
ACCCAATGCTCAATATGGCATCAGCTTTGTTAATGTAAGGGGATGTAGTT
CTGGAACTAATCAAGCAAAAGATGTAAAAGCAAAGCCTCCTCAACCGTCA
AATCAATCTGCACTAAATTCGTTTTTCGGATTTAATAACACTGGTCTGGT
CTCCCCAAAGCCTGGAAAAACACTGGCATTAAAATCTAAATCACCTATAC
TGAAATCACCTCATCAAGTTATGTTGACAAAGACAAAAGTTACAAATGAA
ATTCAAGAAAGCCCAACCAAATATTCGTCAGAAAAGTTGAAGTTCCTCAA
TGATGCAGAAGAGTTTTTGTATAGAGCTGGTTTTGATGAAGCCATCAAAT
TGGGGAAGCCAATCCTAATGGCAGAATACAGAGAAATGATTGAAAAAGAA
CGAGGACAAAAATTGTCAAGGCAGCAAAAGAAACTTCTTGTATATATTGC
TACTGAAATGAAGAAAACTTTACAAGCAGAGAAAAACAATGCTAAGATTT
CATCAACTCCACCAAATATGAATAGTCTTGAACGTGAATGTACAAAATGT
GAAGTCAGTTTTTCAATTGAAGTTATGGAAATCCATGAGCAAATTTGTAC
AGCAACTCCCAGGACTAAACCAAGACAAAATCGAAAATCCATATGTTTTG
ATTATACCATGTCAGATGAGGATAAATCAATACAAAGTTTCAATAAAAGA
AAACCATCAATGTCCACAAAATTAACATCTGCTGGTGAAACTTCTGCTTC
ATCAGCATCCTCTAGCCCTGAATCTCGTTGGTATGGTAAAACAATACCTA
AAAGCTCTGGATCAAATATTACAACAACACCAAAAAGCTCAGGCTCTACA
GCTACAATAACATTGAAATCCTCCTCAAAACTATTTGCACGTAAACGGTC
AGGATCTACTAGTAAAGCAGCTAAAGCTAAATTACCGGAACCTGTTAATT
TACCAATTATAGATACACATGTGTCCAAAACTGGACGTGATTCTCCAATC
TCAAAGAAGCTATTTCTCGATCACAACCAAAACGAAAATGTAAAATCTAA
TAACAATAGTGATGATTTCTTTGATGACATGAATCTCAGTGACTTTGAGG
ATGATACTACTAATAACGATGATGATTTAGTTGTTACAAAAGACACAAAT
TTCAAAAGGGACAATTTTCAGAACTCTATTTCTATAAATGATGATGACGA
TGATATCATAATTTCCAAAGAAAAGAATAACTCACATAATACACAATATG
TTGAATGCCCAATGTGTTTTGAACTCATGAGTACCACTATTATTGAACTA
CATGCTTCTACGTGTAATGGAAAAACAGAGACAACACCACAAACTTTCAA
TAATAAACCAAGCTCAAATGCATTTGCAGCTACTCCATATCTTTCAAGTG
TCAATAGACAAGCAAACAAGATGGGTTCTAATGCATCTACAGTGAGTCCG
AATCTTTCAACAACTAACGGTTCATTGGAGAATCACCAACACCAAGGCGA
TACTCAAGAATGTCCTGTCTGTAACAAACAAATCAATAAATATAAAATTG
CTGTCCATGTTGTTTTGTGTACTGGTAAGGGTCTGGATAATGATAAAGAA
GATGATGACCTACCATCCATTTTCAACAGAAAATCTTCTAGTACTTCCGC
AACGAAAACAAAGACTTCTAAAAAGTCTTCTTCTACTAATGCTAGTCCCT
CCCCTTCAGGGGCTCATAATGTGATGAGTGTTATGCACAAGCCTTCAGGG
AGCCACAATGCAATGAACACTTTCCAAAATACAAACAACACTGGTGCCAG
TTATAATCCTTCGGGAGCTCATAATACACCAACTAATAGTATACTAGTTC
CTGACCATGATTATGGGAAAAGAGAGGAAGCTTCTTGTCCCATATGCTCA
ATAACATTGGATAAGAGTATGATTGAAGTACACGTTAATATGTGTTTAGA
CAGATTGCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043418XLOC_043418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069731-proteinTCONS_00069731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069731-exon-scaffold_506-1575043694:475163..475294TCONS_00069731-exon-scaffold_506-1575043694:475163..475294Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:474822..474971TCONS_00069731-exon-scaffold_506-1575043694:474822..474971Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:474315..474528TCONS_00069731-exon-scaffold_506-1575043694:474315..474528Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:473940..474034TCONS_00069731-exon-scaffold_506-1575043694:473940..474034Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:473760..473812TCONS_00069731-exon-scaffold_506-1575043694:473760..473812Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:472087..472168TCONS_00069731-exon-scaffold_506-1575043694:472087..472168Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:471716..471786TCONS_00069731-exon-scaffold_506-1575043694:471716..471786Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:471584..471634TCONS_00069731-exon-scaffold_506-1575043694:471584..471634Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:470883..470944TCONS_00069731-exon-scaffold_506-1575043694:470883..470944Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:470182..470604TCONS_00069731-exon-scaffold_506-1575043694:470182..470604Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1575043694:468427..469904TCONS_00069731-exon-scaffold_506-1575043694:468427..469904Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:475163..475294TCONS_00069731-exon-scaffold_506-1510915933:475163..475294Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:474822..474971TCONS_00069731-exon-scaffold_506-1510915933:474822..474971Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:474315..474528TCONS_00069731-exon-scaffold_506-1510915933:474315..474528Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:473940..474034TCONS_00069731-exon-scaffold_506-1510915933:473940..474034Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:473760..473812TCONS_00069731-exon-scaffold_506-1510915933:473760..473812Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:472087..472168TCONS_00069731-exon-scaffold_506-1510915933:472087..472168Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:471716..471786TCONS_00069731-exon-scaffold_506-1510915933:471716..471786Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:471584..471634TCONS_00069731-exon-scaffold_506-1510915933:471584..471634Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:470883..470944TCONS_00069731-exon-scaffold_506-1510915933:470883..470944Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:470182..470604TCONS_00069731-exon-scaffold_506-1510915933:470182..470604Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1510915933:468427..469904TCONS_00069731-exon-scaffold_506-1510915933:468427..469904Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:475163..475294TCONS_00069731-exon-scaffold_506-1491911889:475163..475294Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:474822..474971TCONS_00069731-exon-scaffold_506-1491911889:474822..474971Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:474315..474528TCONS_00069731-exon-scaffold_506-1491911889:474315..474528Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:473940..474034TCONS_00069731-exon-scaffold_506-1491911889:473940..474034Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:473760..473812TCONS_00069731-exon-scaffold_506-1491911889:473760..473812Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:472087..472168TCONS_00069731-exon-scaffold_506-1491911889:472087..472168Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:471716..471786TCONS_00069731-exon-scaffold_506-1491911889:471716..471786Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:471584..471634TCONS_00069731-exon-scaffold_506-1491911889:471584..471634Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:470883..470944TCONS_00069731-exon-scaffold_506-1491911889:470883..470944Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:470182..470604TCONS_00069731-exon-scaffold_506-1491911889:470182..470604Clytia hemisphaericaexon
TCONS_00069731-exon-scaffold_506-1491911889:468427..469904TCONS_00069731-exon-scaffold_506-1491911889:468427..469904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:468427..475294 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04036	0.900427	0.118932	0.447889	1.65892	1.08763	2.21924	2.313	1.55315	1.8803	1.19412	1.04111	1.1082	0.473495	1.23461	1.13757	1.93318	1.47173	0.33174	0.658894	0.808547	1.01385	1.4122	1.47545	1.17533	1.51399	0.385833	1.37101e-08	1.01141	0.873484
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002706Xrcc1_N
IPR008979Galactose-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0000012single strand break repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000012 single strand break repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
Blast
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BLAST of TCONS_00069731 vs. Swiss-Prot (Human)
Match: XRCC1 (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.623e-20
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 3 
Query:    3 DPNYPSKNLLKSG---KWLCDRNNPHQSAEVEISFSRATTIHFIDIGNSGSCYVDILVRHSLKG---NDFKSLIPTFTFMSVPESKSGENKCKVEMFKQDRMMADVRDEKWDVLKIVCRQPYKPNAQYGISFV 383
            D  + ++NLLK+    KW   +    ++  V +   +   IH +DIGN GS +V++LV  S  G    D++ L+ T +FMS  ES+SG N  +V MF  D+++    +++WD +KIVC QPY  ++ +G+SFV
Sbjct:   16 DSTHCAENLLKADTYRKWRAAKAG-EKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFV 147
The following BLAST results are available for this feature:
BLAST of TCONS_00069731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRCC14.623e-2036.84DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 ... [more]
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